BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58250.1 Length=861 Score E Sequences producing significant alignments: (Bits) Value Ahg950526 jgi|Araly1|950526|scaffold_802413.1 1055 0.0 > Ahg950526 jgi|Araly1|950526|scaffold_802413.1 Length=673 Score = 1055 bits (571), Expect = 0.0 Identities = 646/681 (95%), Gaps = 9/681 (1%) Strand=Plus/Plus Query 61 TCAACAGACTCTAATCAGCAGCAAATGTGGAGCGTCACCGGAGCATTGACTGTGGCGGTG 120 |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 TCAAAAGACTCTAAT---CAGC-AATGTGGAGCGTCACCGGAGCATTGACTGTGGCGGTG 56 Query 121 CCGCCTACCGCCGCCGCTTGCCGTACGAAACCCTTTCTCATCTCCTCTTCCTTTCCCAAG 180 |||||||||||||||||||||||| | |||||||||||| ||||||| ||| |||||||| Sbjct 57 CCGCCTACCGCCGCCGCTTGCCGTCCAAAACCCTTTCTCGTCTCCTCCTCCCTTCCCAAG 116 Query 181 CAGACAAAGAAACTCCATCTCTCTTCGCCTTCTCTGTCTCTACCATCATCACATTTCTCC 240 |||||||||||||||||||| | | |||| |||||||||||||| ||||||||||||||| Sbjct 117 CAGACAAAGAAACTCCATCTTTGTCCGCCGTCTCTGTCTCTACCTTCATCACATTTCTCC 176 Query 241 TCCTCTTTCAAAACCGCAGCTACCTCCATCGAGCAACAGTCTTCTGTTAACAAGGGAGAG 300 |||||||||||||||||||| |||||| ||||||||||| || | ||||||||||||| Sbjct 177 TCCTCTTTCAAAACCGCAGCCACCTCCGTCGAGCAACAG---TCGGATAACAAGGGAGAG 233 Query 301 AGCACCAAGTACCATTTCCTGGTAGCAAACGCTAAATTCATGCTTGACGAAGAGGAGCAC 360 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 234 AGCATCAAGTACCATTTCCTGGTAGCAAACGCAAAATTCATGCTTGACGAAGAGGAACAC 293 Query 361 TTCCAGGAGCAATTGTTTGAACGTCTCCGTTACT-TCGGTGAGCGTGAATTAGTGCAAGA 419 |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 294 TTCCAGGAGCAATTGTTTGAACGTCTCCGTTACTAT-GGTGAGCGTGACTTAGTGCAAGA 352 Query 420 CTTCTGGCTTGTCATTGAGCCTAAATTCCTTGACAATTTCCCCAAAATTACTCAAAGACT 479 ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 353 CTTTTGGCTTGTGATTGAGCCCAAATTCCTTGACAATTTCCCCAAAATTACTCAAAGACT 412 Query 480 TCGTCGTCCTGCTGTTGCTCTTGTTTCCACCAATGGCACCTGGATCACGTTTATGAAGTT 539 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 413 TCGTCGTCCTGCTGTTGCTCTTGTTTCCACCAATGGCTCCTGGATCACGTTTATGAAGTT 472 Query 540 AAGATTGGATCGTGTTCTGTATGATTCCTTTGAAGCTACCTCTCTTGATGAAGCTTTGGC 599 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 473 AAGATTGGATCGTGTTCTGTATGATTCCTTTGAAGCTACATCTCTTGATGAAGCTTTGGC 532 Query 600 CTCCAATCCTACCACTCTTGAGTTCGATAAGCCTAAAAATTGGGTGGCGCCATACCCCAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CTCCAATCCTACCACTCTTGAGTTCGATAAGCCTAAAAATTGGGTGGCGCCATACCCCAA 592 Query 660 GTATGAACCTGGATGGTGGGATACCTTCTTGCCTAAAGTAACCCAAGAATCTGCAGTATA 719 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 593 GTATGAACCTGGATGGTGGGATACCTTCTTGCCCAAAGTAACCCAAGAATCTGCAGTATA 652 Query 720 GAACTTTGCTTTTTGTCTTGT 740 ||||||||| ||||||||||| Sbjct 653 GAACTTTGCCTTTTGTCTTGT 673 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31870758612 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5