BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58260.1 Length=844 Score E Sequences producing significant alignments: (Bits) Value Ahg495935 jgi|Araly1|495935|fgenesh2_kg.8__1751__AT5G58260.1 1175 0.0 > Ahg495935 jgi|Araly1|495935|fgenesh2_kg.8__1751__AT5G58260.1 Length=828 Score = 1175 bits (636), Expect = 0.0 Identities = 768/832 (92%), Gaps = 7/832 (1%) Strand=Plus/Plus Query 1 ATTGTTAGTAAAGAAATGGGAAGCCGTGCAATATGTATACAACGTGTGGCACCACCGTGT 60 ||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||| Sbjct 1 ATTGTTAGTGAAGAAATGGGAAGCCGTGCCGTATGTATACAACGTGTGGCGCCGCCGTGT 60 Query 61 TTTGAAGCCTCGCAAGTGAAGAAGATCAAAACAGTTGGTTCCTTTTTGGTGAATACTAGG 120 |||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||| Sbjct 61 TTTGAAGCTTCGCAAGTGAAGAAGATCAAAACTGTTGGTCCCTTTTTTGTGAATACTAGG 120 Query 121 AGTAAGAGAAGAAGAAGCACTGGTGTGAA-ATGTAGCAGCATAGCTGACTACATCGGAGG 179 ||||||||||||||||||| ||| || || ||||||||||||||||||||| |||||||| Sbjct 121 AGTAAGAGAAGAAGAAGCAATGGCGT-AAGATGTAGCAGCATAGCTGACTATATCGGAGG 179 Query 180 TGACTTGGTGAAGCCGGACATCGGACAATGGCTTCAAGACGTGGAAGAACACAAGGCAAT 239 |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 180 TGACCTGGTGAAGCCGGACATCGGACAATGGCTTCAAGATGTGGAAGAGCACAAGGCAAT 239 Query 240 CGCCATTTACGCTCCTCATGAGGGTGGTTACGAAGGTCGTTATCTTAACCGTCTCAAAAT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CGCCATTTACGCTCCTCATGAGGGTGGTTACGAAGGTCGTTATCTTAACCGTCTCAAAAT 299 Query 300 GCAGGGCTACTACTTTCTTGACATCTCTGCTCGTGGCCTTGGTGACCCTGAGACTACCCT 359 ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 300 GCAAGGCTACTACTTTCTTGACATCTCTGCTCGGGGCCTGGGTGACCCTGAGACTACTCT 359 Query 360 TCTCAAGAACTACCCTGTTTGCCCTGCTCATCTTGGGAAACAACCTATAGCAAGATGGTA 419 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 CCTCAAGAACTACCCTGTTTGCCCTGCTCATCTTGGCAAACAACCTATAGCAAGATGGTA 419 Query 420 TTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGT 479 ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 420 CTATCCACCAGAGGTTGATTACAGGCTCTCTGCTCTTCCCCCTAGTGCCAAAGGTCTTGT 479 Query 480 TGTATGGGTCCTCGAAGCAAAGGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACT 539 ||||||||||||||||||||||||||||| || | || || |||||||||||||| || Sbjct 480 CGTATGGGTCCTCGAAGCAAAGGTCCTCTCCAAGGCTGAACTCCAATTTCTCGCTTTGCT 539 Query 540 TCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGGAGAAAGTTCGT 599 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || Sbjct 540 TCCCTCTCTTCGTCCTAATGTCCGGGTTATTGCTGAATGTGGCAACTGGAGAAAGTTTGT 599 Query 600 GTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAAGAGTAACTTAATGGCACAAG 659 |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || Sbjct 600 GTGGAAGCCTCTAGCAGAAATTGCAAATTTAGCTGCACAAGAGTAACCTAATGGCACCAG 659 Query 660 TGGAGCT-ACCAGTGTATAGTTTTTCATGAATGCATCTCCCGCAAGTGTAGCAATACTCA 718 | || || ||| |||||||||||| ||||||| ||||| | ||||||||||||||||||| Sbjct 660 TAGAACTTACC-GTGTATAGTTTT-CATGAATACATCTTCTGCAAGTGTAGCAATACTCA 717 Query 719 TCCCATAGTAAAAGTTAAAATCTGTATTTGTAACTTGGTAGTATATTCCCATGGAGTAGT 778 || |||| ||||| || |||| | | ||||| |||||||| ||||||||||||||||| | Sbjct 718 TCACATATTAAAATTTGAAATATATGTTTGTTACTTGGTAATATATTCCCATGGAGTAAT 777 Query 779 TAAAGATAATTTCTGACTCTGCTTTGTCACAAATAAAAGTA-TGTATAATCA 829 ||| || ||||||||||||||||||||||||||| |||||| | |||||||| Sbjct 778 TAAGGACAATTTCTGACTCTGCTTTGTCACAAATGAAAGTACT-TATAATCA 828 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31222669023 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5