BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58320.2
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495944 jgi|Araly1|495944|fgenesh2_kg.8__1760__AT5G58320.1 2383 0.0
Ahg495948 jgi|Araly1|495948|fgenesh2_kg.8__1764__AT5G58330.1 75.0 2e-12
> Ahg495944 jgi|Araly1|495944|fgenesh2_kg.8__1760__AT5G58320.1
Length=1925
Score = 2383 bits (1290), Expect = 0.0
Identities = 1440/1512 (95%), Gaps = 11/1512 (1%)
Strand=Plus/Plus
Query 55 ttctcagctttcccatAGGGTCCATTGATTTTTGCAGCCATGGATTATGATCTGCTTCGT 114
||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 169 TTC-CAGCTTTCCCATAGGGTCCATTGA-TTTTGCAACCATGGATTATGATCTGGTTCGT 226
Query 115 TCCAAGAAGAGTATCAAACGCGTAGAATCCACCAAATCAAATCCATGGTGGTGGGATAGT 174
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 227 TCCAAGAAGAGTATCAAACGAGCAGAATCCACCAAATCAAATCCATGGTGGTGGGATAGT 286
Query 175 CATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGAGATGGACCGGAGC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGAGATGGACCGGAGC 346
Query 235 GTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAGATTCTTTTGCTAAGAAGGCAGAG 294
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 347 GTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAGATTCGTTTGCCAAGAAGGCAGAG 406
Query 295 ATGTATTACCAGTCAAGACCTGAGCTTATT-GCTCTTGTGGATGAGTTTCACCGTATGTA 353
|||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 407 ATGTATTACCAGTCAAGACCTGAGCTTATTAGC-CTTGTCGAGGAGTTTCACCGTATGTA 465
Query 354 CCGTGCTTTGGCAGAGCGGTACGAGAACATCACCGGAGAGTTGAGAAAAGGCTCTCCTTT 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 466 CCGTGCTTTGGCAGAGCGGTACGAGAACATCACTGGAGAGTTGAGAAAAGGCTCTCCTTT 525
Query 414 AGAGCTTCAGTCACAGGGCTCTGGTCTTTCTGACATCTCTGCTTCTGACCTCT-CTGCTT 472
|||||||||||||||||| ||||| ||||| ||||||||||| |||||||| | ||||||
Sbjct 526 AGAGCTTCAGTCACAGGGGTCTGGCCTTTCCGACATCTCTGCCTCTGACCT-TACTGCTT 584
Query 473 TATGGACCTCTAATGAGGTTAATAGGTTAGGTCGTCCTCCTTCTGGTCGACGTGCTCCTG 532
| ||||||||||||||| ||||||||||||| || || |||| ||| |||||||||||||
Sbjct 585 TCTGGACCTCTAATGAGCTTAATAGGTTAGGCCGCCCCCCTTTTGGGCGACGTGCTCCTG 644
Query 533 GTTTTGAATACTTCCTTGGCAATGGAGGACTTCCTTCTGATCTTTATCACAAAGATGGAG 592
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 645 GTTTTGAATACTTCCTTGGCAATGGAGGACTTCCCTCTGATCTTTATCACAAAGATGGAG 704
Query 593 ATGATTCTGCTTCCATTACTGATTCTGAACTTGAATCTGATGATTCTTCTGTGACTAATT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ATGATTCTGCTTCCATTACTGATTCTGAACTTGAATCTGATGATTCTTCTGTGACTAATT 764
Query 653 ACCCTGGTTATGTGAGTATAGGCTCTGACTTTCAGTCCCTAAGCAAGAGGATCATGGATC 712
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 765 ACCCTGGTTATGTGAGCATTGGCTCTGACTTTCAGTCCCTGAGCAAGAGGATCATGGATC 824
Query 713 TTGAGATTGAGCTACGTGAAGCCAAAGAAAGACTTAGGATGCAACTTGAAGGGAACACTG 772
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 825 TTGAGACTGAACTACGTGAAGCCAAAGAAAGACTTAGGATGCAACTTGAAGGGAACACCG 884
Query 773 AGAGCTTGTTGCCGAGGGTGAAAAGTGAGACTAAATTTGTTGATTTCCCGGCAAAACTTG 832
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 885 AGAGCTTGTTGCCGAGGGTGAAAAGTGAGAGTAAATTTGTTGATTTCCCTGCAAAACTTG 944
Query 833 CTGCTTGTGAGCAAGAACTGAA-AGATGTAAATGAGAAGTTACAGAATTCAGAAGACCAA 891
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 945 CTGCTTGTGAGCAAGAACT-AAGAGATGCAAATGAGAAGTTACAGAATTCAGAAGACCAA 1003
Query 892 ATCTATATTTTAAAGAGTCAGCTTGCTAGATACTTGCCATCTGGGTTGGATGATGAACAG 951
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 1004 ATCTATATTTTAAAGAGTCAGCTTGCAAGATACTTGCCATCTGAGTTGGATGATGAACGG 1063
Query 952 -AGCGAAGGGGCAGCTTCAACTCAAGAACTGGACATTGAGACTTTGTCTGAAGAGCTGAG 1010
| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1064 GA-CGAAGGGGCAGCTTCCACCCAAGACCTGGACATTGAGACTTTGTCTGAAGAGCTGAG 1122
Query 1011 AATTACAAGCCTGAGGCTTCGGGAGGCAGAAAAACAAAACGGTATCATGAGAAAAGAAGT 1070
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1123 AATTACAAGCCTGAGGCTTCGGGAGGCAGAGAAACAAAACGGTATCATGCGAAAAGAAGT 1182
Query 1071 CGAGAAAAGCAAGTCTGATGATGCAAAACTCAAGAGTCTGCAAGACATGCTTGAGTCGGC 1130
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1183 CGAGAAAAGCAAGTCTGATGACGCGAAACTCAAGAGTCTGCAAGACATGCTTGAGTCGGC 1242
Query 1131 ACAGAAAGAAGCTGCAGCATGGAAAAGCAAGGCTAGTGCAGATAAAAGAGAGGTGGTGAA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 ACAGAAAGAAGCTGCAGCATGGAAAAGCAAGGCTAGTGCAGATAAAAGAGAGGTGGTGAA 1302
Query 1191 GCTGCTTGATAGAATCTCAATGTTGAAGTCGAGTTTAGCAGGTAGAGATCATGAGATCAG 1250
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1303 GCTGCTTGATAGAATCTCCATGTTGAAATCGAGTTTAGCAGGTAGAGATCATGAGATCAG 1362
Query 1251 GGATTTAAAGACAGCATTGTCTGACGCAGAAGAGAAGATTTTCCCGGAGAAAGCACAGGT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1363 GGATTTAAAGACAGCATTGTCTGACGCAGAAGAGAAGATTTTCCCGGAGAAGGCACAGGT 1422
Query 1311 CAAAGCCGATATAGCAAAGCTGTTGGAAGAAAAAATACACCGGGATGACCAATTCAAAGA 1370
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1423 CAAAGCCGAGATAGCAAAGCTGTTGGAAGAAAAAATACACCGGGATGATCAGTTCAAAGA 1482
Query 1371 GCTGGAAGCCAATGTGCGTTATCTTGAAGATGAGAGAAGAAAGGTGAACAATGAGAAAAT 1430
||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 1483 GCTGGAAGCCAATGTGCGTTATCTTGAAGATGAGATAAGAAGGGTGACCACTGAGAAAAT 1542
Query 1431 AGAAGAGGAGGAAAAGCTGAAGAGCGAAATCGAGGTGCTGACACTGGAAAAGGTAGAGAA 1490
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1543 AGAAGAAGAGGAAAAGCTGAAGGGCGAAATCGAGGTTCTGACACTGGAAAAGGTAGAGAA 1602
Query 1491 AGGGAGATGCATAGAGACGTTAAGCAGAAAGGTGAGTGAGCTAGAGTCGGAGATAAGTCG 1550
|| | | |||||||| ||||||| || |||||||||||| |||||||| |||||||||||
Sbjct 1603 AGAGTGGTGCATAGAAACGTTAAACAAAAAGGTGAGTGAACTAGAGTCAGAGATAAGTCG 1662
Query 1551 ACTTGGAAGTGA 1562
|||||||| |||
Sbjct 1663 ACTTGGAA-TGA 1673
Score = 348 bits (188), Expect = 1e-94
Identities = 241/264 (91%), Gaps = 14/264 (5%)
Strand=Plus/Plus
Query 1653 ggaagTGATAAGACAGCTCTGTTTTTCACTAGACTACTCCAGAGACGAATACAAGAGACT 1712
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1667 GGAA-TGATAAGACAGCTCTGTTTTTCACTAGACTACTCCAGAGACGAATGCAAGAGACT 1725
Query 1713 ACGCATAGCCTTTTCAGGGCATCCACCAACAAG-ACCATCATCCATTCTTGCTTCTTAAT 1771
||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct 1726 ACGCATAGCCTTTTCAGGGTATCGACCAAC-TGCACCATCATCCATTCTTGCTTCTTAAT 1784
Query 1772 TCTTGTGTACAGTATATACTCTTTGTAACTTTGTTGGTGATACTTTCACATATAGGGAGC 1831
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 TCTTATGTACAG--TACACTCTTTGTAACTTTGTTGGTGATACTTTCACATATAGGGAGC 1842
Query 1832 TGTTTTGAGATTGGTTTGTG------GAAAA-GAAAAAG-CTCATAAGATTTGTGTTTGA 1883
||||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||
Sbjct 1843 TGTTTTGAGATCGGTTTG-GAAAAAAGAAAAAGAAAAAGGCTCATAAGATTTGTGTTTGA 1901
Query 1884 TATTAGCTATGCATTATCTAGTTT 1907
| ||||||||||||||| ||||||
Sbjct 1902 TTTTAGCTATGCATTATATAGTTT 1925
> Ahg495948 jgi|Araly1|495948|fgenesh2_kg.8__1764__AT5G58330.1
Length=1706
Score = 75.0 bits (40), Expect = 2e-12
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Minus
Query 1873 TTTGTGTTTGATATTAGCTATGCATTATCTAGTTT-GAGTTCTG 1915
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1706 TTTGTGTTTGATATTAGCTATGCATTATCTAGTTTTGAGTTCTG 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5