BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58430.1 Length=2262 Score E Sequences producing significant alignments: (Bits) Value Ahg950552 jgi|Araly1|950552|scaffold_802439.1 3014 0.0 > Ahg950552 jgi|Araly1|950552|scaffold_802439.1 Length=1916 Score = 3014 bits (1632), Expect = 0.0 Identities = 1815/1904 (95%), Gaps = 9/1904 (0%) Strand=Plus/Plus Query 92 TTCCACATCTGT-TTCAATCATGGCGGAGAATGGTGAAGAGAAGTTACTTGCTGTTGCGC 150 |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4 TTCCAC--CTGTGTTCAATCATGGCGGAGAATGGTGAAGAGAAATTACTTGCTGTTGCGC 61 Query 151 GTCACATAGCCAAAACACTTGGCCACAATGAATCCATGGCCGATGATATCTTACAGATCT 210 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 62 GTCACATAGCCAAAACACTTGGCCATAACGAATCCATGGCCGATGATATCTTACAGATCT 121 Query 211 TCTCCAACTTCGACGGCAGATTTTCTCGCGAGAAGCTCGCCGAAGGTCAAGCTGGAGAAG 270 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 122 TCTCCAACTTCGACGGCAGATTTTCTCGCGAAAAGCTCGCTGAAGGTCAAGCTGGAGAAG 181 Query 271 ATGGATCCGGAGTCGCCACACTCGAGCGAGCTCTAAATTCAATAGACGGTCAGATCTCTC 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 ATGGATCCGGAGTCGCCACACTCGAGCGAGCTCTAAATTCAATAGACGGTCAGATCTCTC 241 Query 331 GCTTTGTTGCTGCGGACCAACCAATTTGGGCTGATCCTGCAGATTCAGCTGCTTTCCTCG 390 |||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 242 GCTTTGTTGCCGCGGATCAACCTATTTGGGCTGATCCTGCTGATTCAGCTGCTTTCCTCG 301 Query 391 ACACAATCGATGAGCTCGTTGCAATCATTAGAGAGTGGAGTCCCATGGCTTCAGAGAAAC 450 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || Sbjct 302 ACACAATCGATGAGCTCGTTGCTATCATCAGAGAGTGGAGTCCCATGGCTTCAGAGACAC 361 Query 451 CTATCGGCATCTGTCTAACACGCGCCGACGATATGATGCAGCAAGCTATGTTCCGCATCG 510 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 362 CTATCGGCGTCTGTCTAGCACGCGCCGACGATATGATGCAGCAAGCTATGTTCCGCATCG 421 Query 511 AAGAAGAGTTCAGGTCGCTTATGGAGCGTGGAGCTGAGTC-TTTCGGACTTAA-TCCTCA 568 |||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| Sbjct 422 AAGAAGAGTTCAGGTCGCTTATGGAGCGTGGAGCTGAGTCGTTT-GG-CTTAAATCCTCA 479 Query 569 GGGAGACGCTGGTGCGATGAATCATCGTTTCGATTCTGAGGAAGAAGAAGATGATGACAG 628 ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 480 GGGAGACGCTGATGCGATGAATCATCGTTTCGACTCTGAGGAAGAAGATGATGATGACAG 539 Query 629 AGACTTCAACAACGGTGATGATATTCAGATCCCAGTGGCACAGCCACTCACTGACTACGA 688 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGATTTCAACAACGGTGATGATATTCAGATCCCAGTGGCACAGCCACTCACTGACTACGA 599 Query 689 TCTTATCATTGATGCTCTCCCTTCGGCGACAATTAACGATCTACACGAGATGGCTAAGCG 748 ||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 600 TCTTATCATCGATGCCCTCCCGTCGGCGACAATTAACGATCTACATGAGATGGCTAAGCG 659 Query 749 AATGCTTGGCGCTGGATTTGGTAAGGCGTGTTCTCATGTTTATAGTTCTTGTAGGAGAGA 808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AATGCTTGGCGCTGGATTTGGTAAGGCGTGTTCTCATGTTTATAGTTCTTGTAGGAGAGA 719 Query 809 GTTTCTGGAAGAAAGTATGTCAAGGTTAGGGTTACAGAAGCTGAGTATTGAAGAAGTTCA 868 |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 720 GTTTTTGGAAGAAAGCATGTCGAGGTTAGGGTTACAGAAGCTGAGTATTGAAGAAGTTCA 779 Query 869 TAAGATGCCGTGGCAGGAGTTAGAAGATGAGATAGATAGGTGGATCAAAGCTGCTAACGT 928 ||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| Sbjct 780 TAAGATGCCGTGGCAGGAGCTAGAGGATGAGATAGATAGGTGGATTAAAGCTGCTAACGT 839 Query 929 TGCTCTAAGAATCCTGTTTCCTAGCGAACGTAGACTCTGTGACCGTGTCTTCTTCGGTTT 988 |||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 840 CGCTCTAAGAATCCTCTTTCCGAGCGAACGTAGACTCTGTGACCGCGTTTTCTTCGGTTT 899 Query 989 CTCCTCTGCTGCTGATCTTTCGTTTATGGAGGTTTGTCGTGGCTCTACCATTCAGCTTCT 1048 |||||||||||||||||| || || |||||||| |||||||||||||||||||||||||| Sbjct 900 CTCCTCTGCTGCTGATCTCTCATTCATGGAGGTATGTCGTGGCTCTACCATTCAGCTTCT 959 Query 1049 GAATTTCGCAGACGCGATTGCTATTGGAAGCAGATCGCCTGAGAGATTGTTTAAAGTGCT 1108 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 960 GAATTTCGCAGACGCGATTGCTATTGGAAGCCGGTCGCCTGAGAGATTGTTTAAAGTGCT 1019 Query 1109 TGATGTGTTTGAGACAATGAGGGATTTGATGCCTGAATTTGAGTCTGTGTTCTCGGATCA 1168 |||||| || |||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1020 TGATGTATTCGAGACAATGAGGGATTTGATGCCTGAGTTCGAGTCTGTGTTCTCGGATCA 1079 Query 1169 GTTTTGCTCAGTTCTTAGAAATGAAGCAGTAACTATTTGGAAACGGTTGGGAGAGGCGAT 1228 |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct 1080 GTTTTGCTCAGTTCTTAGAAATGAAGCAGTTACCATTTGGAAACGATTGGGAGAGGCGAT 1139 Query 1229 AAGAGGTATATTTATGGAGCTTGAGAATTTGATCCGGCGAGACCCGGCTAAAGCTGCGGT 1288 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1140 AAGAGGTATATTTATGGAGCTTGAGAATTTGATCCGGCGAGACCCGGCCAAAGCTGCGGT 1199 Query 1289 TCCGGGCGGTGGTCTCCACCCGATCACTCGTTATGTGATGAATTACCTCCGTGCGGCTTG 1348 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1200 TCCAGGTGGTGGTCTCCACCCGATCACTCGTTATGTGATGAATTACCTCCGTGCGGCGTG 1259 Query 1349 TAGATCCCGGCAAACCTTAGAGCAAGTGTTTGAGGAAAGCAATGGTGTCCCTTCTAAAGA 1408 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1260 CAGATCCCGACAAACCTTAGAGCAAGTGTTTGAGGAAAGCAATGGCGTCCCTTCTAAAGA 1319 Query 1409 TTCAACTCTGTTGACTGTACAGATGTCTTGGATCATGGAGCTTCTAGAGAGTAACTTGGA 1468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TTCAACTCTGTTGACTGTACAGATGTCTTGGATCATGGAGCTTCTAGAGAGTAACTTGGA 1379 Query 1469 AGTAAAATCTAAAGTGTACAAAGATCCAGCTTTGTGCTATGTGTTTCTGATGAATAATGG 1528 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 1380 AGTAAAATCCAAAGTGTACAAAGATCCAGCCTTGTGCTATGTGTTTCTGATGAACAACGG 1439 Query 1529 GAGATACATTGTTCAGAAAGTCAAAGATGGAGACCTAGGATTGCTGTTAGGAGATGATTG 1588 |||||||||||||||||| || || |||||||||||||||||||| |||||||||||||| Sbjct 1440 GAGATACATTGTTCAGAAGGTGAAGGATGGAGACCTAGGATTGCTCTTAGGAGATGATTG 1499 Query 1589 GATTCGGAAACACAATGTCAAAGTGAAACAATACCATATGAATTATCAGAGAAGCTCATG 1648 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1500 GATTCGGAAACACAATGTCAAAGTGAGACAATACCATATGAATTATCAGAGAAGCTCATG 1559 Query 1649 GAATAAGATGCTGGGGTTGCTGAAGGTGGATAATACTGCAGCAGGCATGAACGGTTTGGG 1708 |||||||||||||||||| ||||||||||| ||||| || | |||||||| ||||||||| Sbjct 1560 GAATAAGATGCTGGGGTTACTGAAGGTGGACAATACAGCGGAAGGCATGAGCGGTTTGGG 1619 Query 1709 GAAGACCATGAAGGAGAAGCTGAAGCAGTTCAATATTCAGTTTGATGAGATATGTAAAGT 1768 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1620 GAAAACCATGAAGGAGAAGCTGAAGCAGTTCAATATCCAGTTTGATGAGATATGTAAAGT 1679 Query 1769 GCATTCGACGTGGGTAGTGTTTGACGAGCAGCTGAAAGAAGAGCT-AAAGATCTCACTGG 1827 ||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||| Sbjct 1680 GCATTCGACGTGGGTAGTGTTTGACGAGCAGCTGAGAGAGGAGCTGAAA-ATCTCACTGG 1738 Query 1828 CCAGGCTTTTGGTACCGGCATACGGGAGCTTCATCGGCAGGTTCCAAAACCTTGGAGACA 1887 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1739 CCAGGCTTTTGGTACCGGCATACGGGAGCTTCATCGGAAGGTTCCAAAACCTTGGAGACA 1798 Query 1888 TAGGGAAAAACGCAGACAAGTACATCAAGTATGGAGTTGAGGACATAGAGGCGCGTATTA 1947 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || | Sbjct 1799 TAGGGAAAAACGCGGACAGGTACATCAAGTATGGAGTTGAGGACATAGAGGCGCGAATCA 1858 Query 1948 ACGAGCTGTTCAAAGGGACTACCACGGGAAGAAAATGAAGGTAA 1991 ||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 1859 ACGAGCTTTTCAAAGGGACAACCACAGGAAGAAAATGAAGGTAA 1902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85169787820 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5