BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58590.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495982 jgi|Araly1|495982|fgenesh2_kg.8__1798__AT5G58590.1 1260 0.0
> Ahg495982 jgi|Araly1|495982|fgenesh2_kg.8__1798__AT5G58590.1
Length=820
Score = 1260 bits (682), Expect = 0.0
Identities = 777/822 (95%), Gaps = 9/822 (1%)
Strand=Plus/Plus
Query 74 TCAATACAGAGATGGCGAGCACT-GAGCCAGAGCGTGAGAACCGTGAAGATGAAACCGAA 132
||||||||||||||||||||||| || |||||||| |||||||||||||| ||| | |||
Sbjct 1 TCAATACAGAGATGGCGAGCACTGGA-CCAGAGCGCGAGAACCGTGAAGAGGAAGCTGAA 59
Query 133 GTCAACGAAGATGAAGACACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTT 192
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCCAACGAAGATGAAGATACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTT 119
Query 193 GCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTGAAATCGAAGATGTAT 252
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 120 GCAGTCACCACCGGCGAGGAAAATGAAGACGCCGTCCTCGATCTGAAAGCGAAGATGTAT 179
Query 253 CGATTCGATAAAGAAGGGAACCAATGGAAGGAGAGAGGAGCTGGAACTGTGAAGTTATTG 312
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 CGATTCGATAAAGAAGGGAACCAATGGAAGGAGAGAGGAGCTGGAACTGTTAAGTTATTG 239
Query 313 AAGCATAAGGAAACTGGAAAAGTTCGTCTTGTTATGAGACAATCTAAAACCCTAAAGATC 372
||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AAGCATAAGCAGACTGGCAAAGTTCGACTTGTTATGAGACAATCTAAAACCCTAAAGATC 299
Query 373 TGTGCCAATCACCTCATTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAG 432
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 TGTGCCAATCATCTCATTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGACAAG 359
Query 433 TCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTTCTGC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTTCTGC 419
Query 493 ATTCGATTTGCTTCCATTGAGAATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCT 552
||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 ATTAGATTTGCTTCTATTGAGAATTGCAAAACGTTTATGGAGAAGTTCACTGAAATAGCT 479
Query 553 GAAAGCCAGCAAGTAGGGAAAGAGAGCACCCAGGGCGACGAGGCTGCTGGTTTAATAGAG 612
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 GAAAGCCAGCAAGTAGGGAAAGAGAGCACAGAGGGCGACGAGGCTGCTGGTTTAATAGAG 539
Query 613 AATCTTTCGGTTGAGGAAAATATAAGTgaggagaaagccaaggaagcagaagagaaagag 672
||||| || ||||| ||||| | || || ||||||||||||||||||||||| ||||||
Sbjct 540 AATCTATCAGTTGAAGAAAAGAAAAACGATGAGAAAGCCAAGGAAGCAGAAGATAAAGAG 599
Query 673 cctgcaaaggaagataaagaaacaaaaaaggagaaggtagaagaagagaagaaaacagag 732
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 600 CCTGCAAAGGAAGAGAAAGAAACAAAAATGGAGAAGGCAGAAGAAGAGAAGAAAACAGAG 659
Query 733 gCAAGCACTTAAGTGATCAAATTAAAATTGGTTGTTGGCATCACTAAGTGTGCTTTGCTT 792
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 GCAAGCACTTAAGTCATCAAATTAAAATTGGTTGTTGGCATCAC-AAGTGTGCTTTGCTT 718
Query 793 TATTTTAATATAT---TAT-A--CTTGGCACTGAACATGATGGTAGCTTCAAAAGTTTGA 846
||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||
Sbjct 719 TATTTTAATATATAGATATTATACTTGGCACTGAACATGATGGTAGCTTCAAAAGCTCGA 778
Query 847 GTCTTTGCGCTGTGTTAGAGAAAGAGAATCTTAAGAtttttt 888
||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTCTTTGCGCTGTGTTAGAGAAAGAGAATCTTAAGATTTTTT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5