BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58670.1 Length=1961 Score E Sequences producing significant alignments: (Bits) Value Ahg495989 jgi|Araly1|495989|fgenesh2_kg.8__1805__AT5G58670.1 2671 0.0 Ahg897308 jgi|Araly1|897308|Al_scaffold_0005_1274 438 6e-122 > Ahg495989 jgi|Araly1|495989|fgenesh2_kg.8__1805__AT5G58670.1 Length=1737 Score = 2671 bits (1446), Expect = 0.0 Identities = 1644/1739 (95%), Gaps = 16/1739 (1%) Strand=Plus/Plus Query 11 TTTTTCTCTCTCGCTTAACTTT--C-ACAA-Ga-aa-aaaaaaaGATGAAAGAATCATTC 64 ||||||||||| |||||||||| | |||| | || ||||||||||||| ||||||||| Sbjct 1 TTTTTCTCTCTGGCTTAACTTTCACAACAACAACAACAAAAAAAGATGAAGGAATCATTC 60 Query 65 AAAGTGTGTTTCTGTTGTGTAAGAAACTTCAAGGTGAAATCAAGTGAGCCACCTGAAGAA 124 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 AAAGTGTGTTTCTGTTGTGTAAGAAGCTTCAAGGTGAAATCAAGTGAGCCACCTGAAGAA 120 Query 125 ATCAAGAACCTTTTCCATGATTACTCTCAAGACGACAGGATGTCTGCTGATGAGATGCTC 184 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 ATCAAGAACCTTTTCCATGATTACTCTCAAGACGACAGGATGTCTGCTGACGAGATGCTC 180 Query 185 AGATTCGTGATCCAAGTTCAAGGAGAAACACACGCTGATATCAACTACGTGAAGGATATC 244 ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 181 AGATTTGTGATCCAAGTTCAAGGAGAAACACACGCTGATATAAACTACGTCAAGGATATC 240 Query 245 TTCCACAGACTTAAACATCACGGCGTTTTTCATCCTCGTGGAATTCATCTTGAAGGATTC 304 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 241 TTCCACAGACTTAAACATCACGGCGTTTTCCATCCTCGTGGACTTCATCTTGAAGGATTC 300 Query 305 TACCGTTATCTTCTTAGTGATTTCAACTCTCCATTGCCTCTGACCCGCGAGGTTTGGCAA 364 ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 301 TACCGTTATCTCCTTAGTGATTTCAACTCTCCTTTGCCTGTGACCCGCGAGGTTTGGCAA 360 Query 365 GATATGAATCAGCCATTATCGCATTACTTCTTGTACACGGGACATAACTCTTACTTGACT 424 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATATGAATCAGCCTTTATCGCATTACTTCTTGTACACGGGACATAACTCTTACTTGACT 420 Query 425 GGGAATCAGTTGAACAGTAATAGCAGCATCGAACCGATTGTGAAAGCTCTGAGAA-ATGG 483 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || Sbjct 421 GGGAATCAGTTGAACAGTAAAAGCAGCATCGAACCGATTGTGAAAGCTCTGAGAAGA-GG 479 Query 484 AGTTCGTGTCATTGAGCTTGATTTATGGCCTAACTCTTCAGGAAAAGAAGCTGAAGTTCG 543 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGTTCGTGTGATTGAGCTTGATTTATGGCCTAACTCTTCAGGAAAAGAAGCTGAAGTTCG 539 Query 544 TCATGGAGGGACGTTAACGAGTCGTGAAGATCTGCAGAAATGTCTTAACGTGGTTAAGGA 603 ||| || ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 540 TCACGGCGGGACATTAACGAGTTGTGAAGATCTGCAGAAATGTCTTAACGCGGTTAAGGA 599 Query 604 GAACGCGTTTCAGGTGTCTGCTTATCCTGTTGTGCTTACTTTAGAAGACCATTTAACTCC 663 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GAACGCTTTTCAGGTGTCTGCTTATCCTGTTGTGCTTACTTTAGAAGACCATTTAACTCC 659 Query 664 AATTCTTCAGAAGAAAGTCGCTAAGATGGTGAGTAAGACGTTTGGGGGATCATTGTTTCA 723 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 AAATCTTCAGAAGAAAGTCGCTAAGATGGTGAGTAAGACGTTTGGAGGATCATTGTTTCA 719 Query 724 ATGTACGGACGAA-ACTACAGAGTGTTTTCCTTCACCAGAATCACTCAAGAATAAGATCT 782 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | Sbjct 720 ATGTACGGACGAATA-TACAGAGTGTTTTCCTTCACCAGAATCACTCAAGAATAAGATTT 778 Query 783 TGATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTCAAAAGGTTCAACAA 842 ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 779 TGATCTCTACAAAGCCACCAAAAGAGTATCTTCAGACCCAAGTCTCTCAAGGTTCAACAA 838 Query 843 CGGATGAATCCACTAGAGCTaaaaaaaTTTCGGATGCAGAAGAACAAGTTCAAGAAGAAG 902 |||||||||||| || ||||||||||||| | |||||||||||||| ||||||||||||| Sbjct 839 CGGATGAATCCATTAAAGCTAAAAAAATTGCAGATGCAGAAGAACAGGTTCAAGAAGAAG 898 Query 903 ATGAGGAGAGTGTAGCGATTGAATACAGAGACTTAATCTCGATTCACGCTGGGAACCGCA 962 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 899 ATGAGGAGAGTGTAGCGATCGAATACAGAGACTTAATCTCGATTCACGCTGGAAACCGCA 958 Query 963 AAGGAGGGTTGAAGAATTGCTTGAATGGAGATCCTAACCGAGTCATACGGTTAAGCATGA 1022 ||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct 959 AAGGAGGATTGAAGAACTGCTTGAATGGAGATCCTAATCGAGTCATACGTTTAAGCATGA 1018 Query 1023 GTGAGCAGTGGCTTGAGACTCTGGCAAAAACCCGTGGACCCGATTTAGTAAAGTTCACGC 1082 |||||||||||||||| ||| |||| |||||||||||| | ||||||||||||||||||| Sbjct 1019 GTGAGCAGTGGCTTGAAACTTTGGCTAAAACCCGTGGATCTGATTTAGTAAAGTTCACGC 1078 Query 1083 AGCGGAATCTTTTGAGGATATTTCCCAAGACTACACGGTTTGACTCATCTAACTATGATC 1142 ||||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 1079 AGCGGAATCTTCTCAGGATATTTCCCAAGACAACACGGTTCGACTCGTCTAACTATGATC 1138 Query 1143 CTCTCGTTGGGTGGATTCATGGGGCTCAAATGGTTGCCTTCAATATGCAAAGCCATGGGA 1202 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1139 CTCTCGTTGGATGGATTCATGGTGCTCAAATGGTTGCCTTCAATATGCAAAGTCATGGGA 1198 Query 1203 GGTATCTGTGGATGATGCAAGGAATGTTTAAAGCCAATGGTGGATGTGGCTATGTGAAAA 1262 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1199 GGTATTTATGGATGATGCAAGGATTGTTTAAAGCCAATGGTGGATGTGGCTATGTGAAAA 1258 Query 1263 AGCCTGATGTTTTGCTCTCCAATGGTCCTGAAGGTGAAATCTTTGACCCTTGTAGTCAAA 1322 |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1259 AGCCTGATGTTTTGCTTTCCAATGGTCCTGGAGGTGAAATCTTTGACCCATGTAGTCAAA 1318 Query 1323 ACCTCCCGATCAAGACAACTCTTAAGGTGAAGATCTACACTGGAGAAGGATGGAATATGG 1382 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1319 ACCTCCCGATCAAGACTACTCTTAAGGTGAAGATCTACACTGGAGAAGGTTGGAATATGG 1378 Query 1383 ACTTTCCTTTAGATCACTTTGACCGATACTCTCCTCCTGATTTCTACGCAAAGG------ 1436 | |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1379 ATTTTCCTTTAGATCACTTTGATCGATACTCTCCTCCTGATTTCTATGCAAAGGCAAGAG 1438 Query 1437 TCGGAATCGCAGGGGTTCCATTGGACACAGCAAGTTACAGAACAGAAATAGATAAAGACG 1496 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1439 TCGGAATCGCAGGGGTTCCATTGGACACAGCAAGTTACAGAACAGAAATAGATACAGACG 1498 Query 1497 AATGGTTTCCAATTTGGGACAAGGAGTTTGAGTTCCCATTACGTGTTCCTGAGTTATCTC 1556 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| || Sbjct 1499 AATGGTTTCCGATTTGGGACAAGGAGTTCGAGTTCCCATTGCGTGTTCCTGAGTTAGCTA 1558 Query 1557 TTCTGTGTATCACAGTCAAAGATTACGACAGTAACACTCAGAACGATTTCGCTGGCCAGA 1616 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1559 TTCTGTGTATCACAGTCAAAGACTACGACAGTAACACTCAGAACGATTTCGCTGGCCAGA 1618 Query 1617 CATGTTTTCCGTTGTCGGAGGTAAGGCCAGGTATTCGTGCCGTTCGGCTCCACGATCGTG 1676 ||||| ||||| |||||||||| ||||| |||||||||||||| |||||||| ||||||| Sbjct 1619 CATGTCTTCCGCTGTCGGAGGTCAGGCCGGGTATTCGTGCCGTCCGGCTCCATGATCGTG 1678 Query 1677 CCGGAGAGGTCTACAAGCACGTGAGACTGCTCATGCGGTTTGTCTTGGAGCCTCGTTAG 1735 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1679 CCGGGGAGGTCTACAAGCATGTGAGACTGCTCATGCGGTTTGTCTTGGAGCCTCGTTAG 1737 > Ahg897308 jgi|Araly1|897308|Al_scaffold_0005_1274 Length=516 Score = 438 bits (237), Expect = 6e-122 Identities = 291/318 (92%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 875 GATGCAGAAGAACAAGTTCAAGAAGAAGATGAGGAGAGTGTAGCGATTGAATACAGAGAC 934 ||||||||||||| ||||||||| |||||| |||||||| |||||| |||||||||||| Sbjct 94 GATGCAGAAGAACTGGTTCAAGAAAAAGATGTGGAGAGTGCAGCGATCGAATACAGAGAC 153 Query 935 TTAATCTCGATTCACGCTGGGAACCGCAAAGGAGGGTTGAAGAATTGCTTGAATGGAGAT 994 ||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||| Sbjct 154 TTAATCTCGATTCACGCTGGGAACCACAAAGGAGGATTGAAGAACTGCTTAAATGGAGAT 213 Query 995 CCTAACCGAGTCATACGGTTAAGCATGAGTGAGCAGTGGCTTGAGACTCTGGCAAAAACC 1054 |||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 214 CCTAACCGAGACATACGGTTAAGCATCAGTGAGCAGTGGCTTGAGACTTTGGCTAAAACT 273 Query 1055 CGTGGACCCGATTTAGTAAAGTTCACGCAGCGGAATCTTTTGAGGATATTTCCCAAGACT 1114 |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 274 CGTGGACCTGATTTAGTAAAGTTCACGCAGTGGAATCTTTTGAGGATATATCCCAAGACA 333 Query 1115 ACACGGTTTGACTCATCTAACTATGATCCTCTCGTTGGGTGGATTCATGGGGCTCAAATG 1174 |||||||| ||||| | ||||||||||||||||||||| | ||||||||| ||||||| | Sbjct 334 ACACGGTTCGACTCGTATAACTATGATCCTCTCGTTGGATCGATTCATGGTGCTCAAACG 393 Query 1175 GTTGCCTTCAATATGCAA 1192 |||| ||||||||||||| Sbjct 394 GTTGTCTTCAATATGCAA 411 Score = 93.5 bits (50), Expect = 5e-18 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 770 AAGAATAAGATCTTGATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTC 828 |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 AAGATTACGATCTTAATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTC 71 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73704624075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5