BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58700.1 Length=1979 Score E Sequences producing significant alignments: (Bits) Value Ahg495993 jgi|Araly1|495993|fgenesh2_kg.8__1809__AT5G58700.1 3125 0.0 > Ahg495993 jgi|Araly1|495993|fgenesh2_kg.8__1809__AT5G58700.1 Length=1975 Score = 3125 bits (1692), Expect = 0.0 Identities = 1884/1976 (95%), Gaps = 15/1976 (1%) Strand=Plus/Plus Query 16 AACAAGACGACGATACATACAC----A-A-AC--ATGGAAGGaaaaaaaGAGATGGGTAG 67 |||||||||||||||||||||| | | || ||||| ||||||| |||||||||||| Sbjct 1 AACAAGACGACGATACATACACATATACATACATATGGAGGGAAAAAGAGAGATGGGTAG 60 Query 68 TTACAAATTCTGTCTGATCTTCACAAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGA 127 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 TTACAAATTCTGTCTGATCTTCACGAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGA 120 Query 128 AGACGTCAGAGATCTTTTCGAGAAATACACCGAAGGCGATGCTCATATGTCGCCGGAGCA 187 ||||||||||| |||||||||||||| |||| || || ||||| |||||||||||||| Sbjct 121 TGACGTCAGAGAGATTTTCGAGAAATACGCCGACGGTGAAGCTCACATGTCGCCGGAGCA 180 Query 188 GCTACAGAAGCTCATGACGGAGGAAGGAGGA-GA--AGGAGAAACAAGTCTAGAGGAAGC 244 |||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct 181 GCTACAGAAGCTCATGGCGGAGGAAGGAGGAGGAGGAGGAGAAACAAGTCTGGAGGAAGC 240 Query 245 AGAGAGAATCGTTGACGAGGTTCTTCGCCGGAAACATCACATTGCAAAGTTCACCAGACG 304 |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | Sbjct 241 GGAGAGAATCGTTGACGAGGTGCTTCGCCGGAGACATCACATTGCAAAGTTCACCAGAAG 300 Query 305 AAACCTTACTCTTGATGATTTCAATTATTACCTCTTTTCTACTGATCTTAATCCTCCTAT 364 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 301 AAACCTTACTCTTGATGATTTCAATTATTACCTGTTTTCTACTGATCTTAATCCTCCAAT 360 Query 365 CGCCGATCAGGTCCATCAAAACATGGATGCTCCATTGTCACATTACTTTATATTCACAGG 424 || ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 361 CGGCGATCAGGTCCATCAAAACATGGATGCTCCACTGTCACATTACTTTATATACACAGG 420 Query 425 CCACAATTCCTATTTAACTGGAAATCAGCTAAGTAGCAACTGCAGTGAACTTCCTATTGC 484 ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 421 CCATAATTCGTACTTAACTGGAAATCAGCTCAGTAGCAACTGCAGTGAACTTCCTATTGC 480 Query 485 AGATGCATTGAGACGAGGCGTGAGAGTTGTTGAGTTGGATCTTTGGCCACGTGGTACCGA 544 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 481 AGATGCATTGAGACGAGGCGTGAGAGTGGTTGAGTTGGATCTTTGGCCTCGTGGTACCGA 540 Query 545 TGATGTCTGCGTTAAACATGGAAGGACATTGACAAAGGAAGTGAAGTTGGGAAAATGTTT 604 ||||||||| ||||||||||||||||| |||||||| |||||||| ||||| |||||||| Sbjct 541 TGATGTCTGTGTTAAACATGGAAGGACCTTGACAAAAGAAGTGAAATTGGGGAAATGTTT 600 Query 605 GGAATCTATTAAAGCTAATGCCTTTGCTATTTCAAAGTATCCTGTTATTATTACTCTTGA 664 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 601 GGAATCCATTAAAGCTAATGCCTTTGCTACTTCAAAGTATCCTGTTATTATTACTCTTGA 660 Query 665 AGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCTAAGATGATAACTCAGACATTTGG 724 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 661 AGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCCAAGATGATAACTCAGACATTTGG 720 Query 725 AGATATGTTGTATTACCATGATTCTCAAGGTTGTCAAGAATTTCCTTCACCGGAAGAGTT 784 ||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 721 AGATATGTTGTATTACCATGATTCTGAAAGTTGTCAAGAATTTCCTTCACCTGAAGAGTT 780 Query 785 GAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATAC 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 781 GAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATGC 840 Query 845 TAAGGAGAAAGATAATGGAGAAAAAGGTAAGGATTCGGATGAGGATGTATGGGGCAAAGA 904 ||||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 841 GAAGGAGAAAGATAGTGGAGAGAAAGGGAAGGATTCGGATGAGGATGTATGGGGAAAAGA 900 Query 905 GCCAGAAGACCTTATTTCTACGCAATCTGATCTTGACAAGGTGACAAGCAGTGTAAATGA 964 |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 901 GCCAGAAGACCTTATTTCTACGCAGTCTGATCTTGAGAAGGTCACAAGCAGTGTAAATGA 960 Query 965 TCTCAATCAAGATGATGAAGAAAGGGGGTCTTGTGAGTCTGATACGTCATGCCAATTACA 1024 ||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 961 TCTCAGTCAAGATGAGGAAGAAAGAGGGTCTTGTGAGTCTGACACGTCATGCCAATTACA 1020 Query 1025 AGCACCAGAATACAAGCGTCTTATCGCTATCCATGCCGGGAAGCCAAAAGGCGGTTTACG 1084 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1021 AGCACCAGAATACAAGCGTCTTATTGCTATCCATGCTGGGAAGCCAAAAGGCGGTTTACG 1080 Query 1085 GATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACT 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACT 1140 Query 1145 TGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCT 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 TGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCT 1200 Query 1205 GAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTG 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTG 1260 Query 1265 GATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCATTGTGGCT 1324 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1261 GATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCTTTGTGGCT 1320 Query 1325 GATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCT 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCT 1380 Query 1385 TATGGATGCAAGTCCTAATGGACAAGATTTTTACCCCAAAGATAATTCGTCTCCAAAGAA 1444 |||||||||| || |||||||||||| |||||| |||||||||||||||| ||||||||| Sbjct 1381 TATGGATGCAGGTTCTAATGGACAAGGTTTTTATCCCAAAGATAATTCGTGTCCAAAGAA 1440 Query 1445 AACTTTAAAGGTGAAAGTC-TGTATGGGAGATGGATGGCTCCTAGACTTCaaaaaaaCTC 1503 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1441 AACTTTAAAGGTGAAAGTCCT-TATGGGAGATGGATGGCTCCTAGACTTCAAAAAAACTC 1499 Query 1504 ACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCTGGAGCACCTG 1563 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1500 ACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCCGGAGCACCTG 1559 Query 1564 TTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCTATTTGGAATA 1623 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1560 TTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCCATTTGGAATA 1619 Query 1624 AGGAGTTCACATTCCCTTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTTCATG 1683 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1620 AGGAGTTCATATTCCCGTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTCCATG 1679 Query 1684 AGCACGACGTGAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTTTCAGAGA 1743 |||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1680 AGCATGACATAAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTGTCCGAGA 1739 Query 1744 TAAGACAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCA 1803 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 TAAGGCAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCA 1799 Query 1804 CACGGCTTCTTATGCGCTTCGAGTTTGTCTGAGACGCCATTTTTGGTGCGTGTATCCATC 1863 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1800 CACGGCTTCTTATGCGCTTCGAGTTTGTCTGAGATGCCATTTTTGGTGCGTGTATCCATC 1859 Query 1864 TAGATTTATATCTTCTTACTTTATTCGATATGCTGTGT-TTTATGTGTCTTATGCTTCTT 1922 ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| Sbjct 1860 TAGATTTATATCTTCTTACTTTATTCGGTATGTTGTGTGTTTATGTGTCTTATGCTTCTT 1919 Query 1923 CATTGATGAATAAAATTTGATCTTT-ACATGAGAAATATATAGATCTTCTGAAATT 1977 |||||| |||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct 1920 CATTGAGGAATAAAATTTGATCTTTTACATGATAAATATATAGATCTTCCGAAATT 1975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74390248485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5