BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58770.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496002 jgi|Araly1|496002|fgenesh2_kg.8__1818__AT5G58770.1 1548 0.0
> Ahg496002 jgi|Araly1|496002|fgenesh2_kg.8__1818__AT5G58770.1
Length=994
Score = 1548 bits (838), Expect = 0.0
Identities = 947/999 (95%), Gaps = 10/999 (1%)
Strand=Plus/Plus
Query 5 AATCGATTCTCTTAAGATGTTATCTCTACGAGTTCCTACTCCCACTTCCTTCGATTTCCG 64
||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 1 AATCGATTCTCTTAAGATGTTATCTCTACGAGTTCGTCCTCCTACATCCTTCGATTTCCG 60
Query 65 GCGATATCAA-GCCGGAG-ATTTAGAGCGGCGATGGCGGTTAAGTAGAGA-TAGCTTTCT 121
||||| | || ||||| | ||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 GCGAT-TTAACGCCGG-GTATTTAGAGCGGCGATGGCGGTTAAGTAGAGACT-GCTTTCT 117
Query 122 CTCTTTCTCGCCAAAATTCGAGGAAAACAGAGGATTCCGATTCGGAGTCAAATCTTCCAA 181
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 118 CTCTTTCTCGCCAAAATTGGAGGAAAACAGAGGAGTCCGATTCGGAGTCAAATCTTCTAA 177
Query 182 ATCGGATGTTTCGTTTACGGCGGCGGAGGAAGAAGAAACTCTGCCGGAAGAGCTACATGC 241
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 178 ATCGGAGGTTTCGTTTACGGCGGCGGAGGAGGAAGAAACTCTGCCGGAAGAGCTTCAACC 237
Query 242 AGAGCTGATGCCGAAACATGTGGCGATTATAATGGACGGAAACGGAAGATGGGCGAAGAA 301
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 AGAGCTGATGCCGAAACACGTGGCGATTATAATGGACGGAAACGGAAGATGGGCAAAGAA 297
Query 302 TCGTGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGT 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGAGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGT 357
Query 362 TGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTTACAGTTTTCGCTTTCTCTACTGATAA 421
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 358 TGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTCACTGTTTTCGCCTTCTCTACTGATAA 417
Query 422 TTGGATTAGACCAAGAATTGAGATTGATTTCTTGTTTAGTTTATTTGAGAGATCACTCAA 481
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 418 TTGGATTAGACCAAGGATTGAGATTGATTTCTTGTTTAGTTTATTCGAGAGAGCACTCAA 477
Query 482 AACAGAATTTCAGAACTTAGCCAAGAACAATGTTCGGATATCGATCATTGGAGATTCCTC 541
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 478 ATCAGAATTTCAGAACTTAGCCGAGAACAATGTTCGGATATCGATTATTGGAGATTCATC 537
Query 542 GAAACTTCCGAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAA 601
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAAACTGCCAAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAA 597
Query 602 CACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGC 657
Query 662 GTGTAGAGGTATCGCG-AGGAGAGTGAAAGATGGCGAAATCGAAGTTGAGGAGATAGACG 720
|||||||||||||||| || ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 658 GTGTAGAGGTATCGCGCAG-AGAGTTAAAGATGGCGAGATCGGAGTTGAGGAGATAGACG 716
Query 721 AGAGACTGATTGAGGAAGAATTGGAGACGAATTGTACTGAGTTTCCTTACCCGGATTTAC 780
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 717 AGAGACTGATTGAGGAAGAATTGGAGACCAATTGTACTGAGTTTCCTTACCCGGATTTGC 776
Query 781 TTATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATA 840
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATA 836
Query 841 CAGAGCT-TTTCTTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGCGGTTTTATCGAA 899
||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 837 CAGAGCTCTTT-TTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGTGGTTTTATCAAA 895
Query 900 GCTTTGATGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGTAAATCTTGATTTTCT 959
||||| | |||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 896 GCTTTAACGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGGAAATCTTGAATTTCT 955
Query 960 TGCAAATGGTGTAATGAAAACTGAATATGATGTGTAATA 998
||||| ||||||||||||||||| |||||||||||||||
Sbjct 956 TGCAACTGGTGTAATGAAAACTGTATATGATGTGTAATA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5