BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58787.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496006 jgi|Araly1|496006|fgenesh2_kg.8__1822__AT5G58787.1 1459 0.0
Ahg485090 jgi|Araly1|485090|fgenesh2_kg.5__1082__AT3G47160.1 316 2e-85
> Ahg496006 jgi|Araly1|496006|fgenesh2_kg.8__1822__AT5G58787.1
Length=1180
Score = 1459 bits (790), Expect = 0.0
Identities = 1030/1138 (91%), Gaps = 48/1138 (4%)
Strand=Plus/Plus
Query 62 CTGTCTACATTAATGTAATTTTGATCATCGGATTGGGTGAAAGAAACATCAAA--CTCCT 119
|||||| ||||||||||||||||||||||||||||||||||| | | | ||| || ||
Sbjct 40 CTGTCTTCATTAATGTAATTTTGATCATCGGATTGGGTGAAA-CATC-TAAAATTCTGCT 97
Query 120 AAAAGAGAAGCCTTT-AAA------Gtttttt-tttAATCAAAAACAAAAGGAAGAAAAT 171
||||||||||||||| ||| |||||| ||||| | ||||||||| ||||||||
Sbjct 98 AAAAGAGAAGCCTTTAAAATTTTCCTTTTTTTCTTTAAAC-AAAACAAAA-GAAGAAAA- 154
Query 172 TTTCCTTTTTGTTTTAGATGGCATGAATCATCATCATCGCTTTGCTTTCTTGATTCTCTA 231
||| ||||||||||| ||| || | || | ||| ||| |||||||||||||||||||
Sbjct 155 TTTACTTTTTGTTTTGGAT-GC-T--ATGA--ATCTTCGTTTTGCTTTCTTGATTCTCTG 208
Query 232 TTTCGTTTGATGGGATTTGTTTTTCTGGG-AATTTATTCATTCACCTGCTGCCATGGCTA 290
||||||||||||||| | ||||||||| |||| ||||||||| | ||||||||||||
Sbjct 209 TTTCGTTTGATGGGAACT-ATTTTCTGGGAAATTAATTCATTCA-C--CTGCCATGGCTA 264
Query 291 AATTATCTTTCAAGGATTCTCTTAAAGCTCTTGAAGCCGATATTCAACACGCTAATACAC 350
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 265 AATTATCTTTCAAGGATTCGCTGAAAGCTCTTGAAGCCGATATTCAACACGCTAATACAC 324
Query 351 TAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGCGTTCAGATGAGATTATCATACA 410
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 325 TAGCTTTAGATTGTCCTCGGGAGAAGGATGGAGCGCGCGTTCAGATGAGATTATCGTACA 384
Query 411 GCCCGACTGCTCAAttttttctttttCTTGTACAATGGACTGATTGTAAGCTTGCTGGTT 470
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 385 GCCCGGCTGCTCAATTTTTTCTTTTTCTTGTACAATGGACTAATTGTCAGCTTGCTGGTA 444
Query 471 TCCTCGGTTTACTCAGAGTTCTTATTTATATGACTTATGCAGATGGGAAA-ACAACCATG 529
||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||
Sbjct 445 CCCTCGGTTTACTCAGAGTTCTTATTTATATGACTTATGCAGATGG-AAAGACCACGATG 503
Query 530 TCGGTTTACGAAAGAAAAGCCAGTATTAGAGAGTTCCAAGCTGTGATATTACCATCTTTG 589
|||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||
Sbjct 504 TCGGTTTACGAAAGAAAAGCCAGTATCAGAGAGTTCTACGCTGTGATATTACCGTCTTTG 563
Query 590 TCACAACTACAAAGGGGTGTTACAGACATAGATGACAGCAAACAAAAAGAGGTATGCAAG 649
||||||||| | ||||| |||||||| |||||||| ||| |||||||||||||||||||
Sbjct 564 TCACAACTA-A--GGGGTATTACAGACGTAGATGACCGCAGACAAAAAGAGGTATGCAAG 620
Query 650 ATGCGATACAGAAAGAAGGATGAGAGCGA-AA-TG-----TC--GGAGATTGAGATCGAG 700
||||||||||||||||||||||||||||| || || || |||||||||||| |||
Sbjct 621 ATGCGATACAGAAAGAAGGATGAGAGCGAGAAGTGCGAGCTCTCGGAGATTGAGATAGAG 680
Query 701 AGGGAAGAAGAATGTGGAATCTGTATGGAGATGAACAGCAAGGTGGTGCTACCAAACTGT 760
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 681 AGGGAAGAAGAATGTGGAATCTGTATGGAAATGAACAGCATGGTGGTGCTACCAAACTGT 740
Query 761 ACTCATTCTTTATGCATCAAGTGTTACCGCGATTGGCGAGGGAGATCACAGTCATGCCCG 820
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 741 ACTCATTCTTTATGCATCAAGTGTTATCGCGATTGGCGAGGGAGATCACAGTCATGCCCC 800
Query 821 TTCTGCAGAGACAGCCTTAAAAGAGTAGATTCAGGTGATCTCTGGATGTTTTTGGACCAA 880
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 801 TTCTGCAGAGACAGCCTTAAAAGAGTAGACTCGGGTGATCTCTGGATGTTTTTGGACCAA 860
Query 881 AACGATACAGTGAATCTCACTGCAATCGCTAGAGAGAACCAGAAACGATTGTTTATGTAC 940
||||||||||||||||| |||||||||| ||||||||||||||| | ||||||| ||||
Sbjct 861 AACGATACAGTGAATCTTGCTGCAATCGCGAGAGAGAACCAGAAAAGGTTGTTTACGTAC 920
Query 941 ATTGAGAAGTTACCACTAGTGGTTCCAGATCAAGTGTATGCGTCTTCTCCTTACGATTTC 1000
||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 921 ATTGAGAAGTTGCCACTGGTGGTTCCAGATCAAGCGTATGCGTCTTCTCCTTACGATTGC 980
Query 1001 CATGTGAGATGAAGGCGGAAAA-CCGGTTCTGGTAAATCTTTATCTGTATACTTGGGG-A 1058
|||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 981 CATGTGAGGTGAAGGCGGAAAAACCGGTTCTGGTAAATTTTTATCTGTATACTTGGGGGA 1040
Query 1059 AAAGGAGGACTTGTTTTGTAAATGTATTAGAGTTAGTACAAGTAGTAGTAATCAGTCACT 1118
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1041 AAAG-AGGACTCCTTTTGTATATGTATTAGAGTTAGTACAAGTAGTAGTAATCAGTCTCT 1099
Query 1119 TTCTTCACCATTATCTTGGGAAGGTTCCACTTACTACGTGCTTTTTCTGCATTTTGCT 1176
||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1100 TTCTT-----TTATCTTGGGAAAGTTCCACTTACTACGTGCTTTTTCTGCATTTTGCT 1152
> Ahg485090 jgi|Araly1|485090|fgenesh2_kg.5__1082__AT3G47160.1
Length=1095
Score = 316 bits (171), Expect = 2e-85
Identities = 247/284 (87%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 284 ATGGCTAAA-TTATC-TTTCAAGGATTCTCTTAAAGCTCTTGAAGCCGATATTCAACACG 341
||||| ||| || || ||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 146 ATGGCAAAAGTT-TCGTTT-AAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACG 203
Query 342 CTAATACACTAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGCGTTCAGATGAGAT 401
|||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 204 CTAACACTGTAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGC 263
Query 402 TATCATACAGCCCGACTGCTCAAttttttctttttCTTGTACAATGGACTGATTGTAAGC 461
|||| |||| ||| ||||||| ||||| |||||||||||||||||||||||||| | |
Sbjct 264 TATCTTACAATCCGGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATC 323
Query 462 TTGCTGGTTTCCTCGGTTTACTCAGAGTTCTTATTTATATGACTTATGCAGATGGGAAAA 521
|||| ||| ||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 324 TTGCCGGTACCCTCGGTTTGCTCAGAGTTCTTATTTACATGACATATGCGGATGGGAAAA 383
Query 522 CAACCATGTCGGTTTACGAAAGAAAAGCCAGTATTAGAGAGTTC 565
| || ||||||||||| || |||||| ||||||||| ||| |||
Sbjct 384 CCACAATGTCGGTTTATGAGAGAAAAACCAGTATTAAAGATTTC 427
Score = 289 bits (156), Expect = 4e-77
Identities = 335/419 (80%), Gaps = 22/419 (5%)
Strand=Plus/Plus
Query 603 GGGGTGTTACAGACATAGATGACAGCAAACAAAAAGAGGTATGCAAGATGCGATACAGAA 662
||||| | |||||| | |||||| ||||||| |||||||| ||||| || || |||||||
Sbjct 431 GGGGTATCACAGACCTGGATGACCGCAAACAGAAAGAGGTCTGCAAAATACGGTACAGAA 490
Query 663 A-GAAGGATGAGAGC-G-AAA--T---G---TCGGAGATTGAGATCGAGAGGGAAGAAGA 711
| || ||||||| | | ||| | | ||||||||||| |||||||| ||||||||
Sbjct 491 ATAAAAGATGAGA-CTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGA 549
Query 712 ATGTGGAATCTGTATGGAGATGAACAGCAAGGTGGTGCTACCAAACTGTACTCATTCTTT 771
||| || || |||||||||||||||| || ||| || || || || ||||| ||||||||
Sbjct 550 ATGCGGGATTTGTATGGAGATGAACAACATGGTTGTTCTCCCCAATTGTACCCATTCTTT 609
Query 772 ATGCATCAAGTGTTACCGCGATTGGCGA-GGGAGATCACAGTCATGCCCGTTCTGCAGAG 830
|||||||||||||||||||||||||| | ||||| ||| | |||||||| || ||| |||
Sbjct 610 ATGCATCAAGTGTTACCGCGATTGGC-ATGGGAGGTCAGAATCATGCCCTTTTTGCCGAG 668
Query 831 ACAGCCTTAAAAGAGTAGATTCAGGTGATC-TCTGGATGTTTTTGGACCAAAAC-GATAC 888
|||| ||||| |||||| | ||||| || | | |||||||| |||| ||| | |||||
Sbjct 669 ACAGTCTTAAGAGAGTAAACTCAGGGGA-CTTGTGGATGTTAATGGA-GAAATCGGATAC 726
Query 889 AGTGAATCT-CACTGCAATCGCTAGAGAGAACCAGAA-ACGATTGTTTATGTACATTGAG 946
|| ||| | | | |||| | | ||||| |||| | | ||||| ||||||| |||
Sbjct 727 GGTCAATATGTA-TACAATTGAGCGGGAGAATAAGAAGA-GGCTGTTTGTGTACATAGAG 784
Query 947 AAGTTACCACTAGTGGTTCCAGATCAAGTGTATGCGTCTTCTCCTTACGATTTCCATGT 1005
|| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 785 AAACTACCTCTAGTGGTTCCAGATCAAGTGTTTGCGTCTTCTCCTTACGATTGCCATGT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5