BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58800.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496008 jgi|Araly1|496008|fgenesh2_kg.8__1824__AT5G58800.1 1382 0.0
Ahg497377 jgi|Araly1|497377|fgenesh2_kg.279__2__AT5G58800.1 1376 0.0
> Ahg496008 jgi|Araly1|496008|fgenesh2_kg.8__1824__AT5G58800.1
Length=888
Score = 1382 bits (748), Expect = 0.0
Identities = 844/890 (95%), Gaps = 7/890 (1%)
Strand=Plus/Plus
Query 1 GTATTGTTCTTGAACATCTCCGAAGCTAACTCCGAACATCAAAACTGTATCTTCTTCTCC 60
|||||||||||||||||| |||||||||||||||||| || ||||||| |||| ||||||
Sbjct 1 GTATTGTTCTTGAACATCCCCGAAGCTAACTCCGAACCTC-AAACTGTTTCTTATTCTCC 59
Query 61 TCCTCCTCCTTGGCCCTTTTCACAAAGTTTCAGGGACAAAGAGTT-TT-TGTTGTCAGTA 118
|| || ||||||| ||||||||||||||||||||||| | ||||| || | ||||| | |
Sbjct 60 TCTTCTTCCTTGGACCTTTTCACAAAGTTTCAGGGAC-AGGAGTTCTTGTTTTGTCTGCA 118
Query 119 ACTTCAAG--CT-CTAAGCTATGGCTGTCACCAAGATTTATATTGTGTACTATTCCTTGC 175
|||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 ACTTCAAGCCCTACTAAGCAATGGCTGTCACCAAGATTTATATAGTGTACTATTCCTTGC 178
Query 176 ACGGCCACGTCGAGACAATGGCACGAGAGGTACTTCGGGGAGTAAACTCTGTTCCAGACG 235
||||||| ||||||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct 179 ACGGCCATGTCGAGACAATGGCACGAGAGGTTCTCCGAGGAGCAAACTCTGTTCCAGACG 238
Query 236 TGGAAGCAACACTTTGGCAAGTGCCAGAGACATTACCGGAGAAAATATTGGAGAAAGTGA 295
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 TGGAAGCAACACTCTGGCAAGTGCCAGAGACATTACCGGAGAAAATACTGGAGAAAGTGA 298
Query 296 AGGCCGTTCCAAGACCGGACGATGTGCCGGATATTCGACCAGAACAACTGGCGGAAGCCG 355
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 AGGCCGTTCCAAGACCGGACGATGTGGCGGATATTCGACCAGAACAACTGGCGGAAGCCG 358
Query 356 ACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTT 418
Query 416 TCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCAGGAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 TCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCGGGAC 478
Query 476 TCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGA 538
Query 536 CAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAAGTA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 539 CAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAGGCA 598
Query 596 TGTACGAGATGGGAGAGGTGAAAGGTGGTTCGCCTTATGGCTCAGGGACTTATGCAGCTG 655
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 TGTACGAGATGGGAGAGGTGAAAGGTGGTTCGCCGTATGGCTCAGGGACTTATGCAGCTG 658
Query 656 ATGGATCACGCGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACT 715
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGGATCACGGGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACT 718
Query 716 TTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAAATTCTAAACCATATCA 775
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 719 TTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAAAGTCTAAACCAAATCA 778
Query 776 ACTCTGTGTTTCCTATACTAAACAATCTGTAAATGTAAAGGTGAACACTGAAAATAAGAT 835
||||||| |||| |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 779 ACTCTGTATTTCATATACTAATCAATCTGTAAATGTGAAGGTGAATACTGAAAATAAGAT 838
Query 836 CGACATATACAGAGCAAAACACCGGTGTGTAAGCTAATGGTCAATAAATC 885
|||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 839 TGACATATACAGAGCAAAACATCTATGTGTAAGCTAATGGTCAACAAATC 888
> Ahg497377 jgi|Araly1|497377|fgenesh2_kg.279__2__AT5G58800.1
Length=888
Score = 1376 bits (745), Expect = 0.0
Identities = 843/890 (95%), Gaps = 7/890 (1%)
Strand=Plus/Plus
Query 1 GTATTGTTCTTGAACATCTCCGAAGCTAACTCCGAACATCAAAACTGTATCTTCTTCTCC 60
|||||||||||||||||| |||||||||||||||||| || ||||||| |||| ||||||
Sbjct 1 GTATTGTTCTTGAACATCCCCGAAGCTAACTCCGAACCTC-AAACTGTTTCTTATTCTCC 59
Query 61 TCCTCCTCCTTGGCCCTTTTCACAAAGTTTCAGGGACAAAGAGTT-TT-TGTTGTCAGTA 118
|| || ||||||| ||||||||||||||||||||||| | ||||| || | ||||| | |
Sbjct 60 TCTTCTTCCTTGGACCTTTTCACAAAGTTTCAGGGAC-AGGAGTTCTTGTTTTGTCTGCA 118
Query 119 ACTTCAAG--CT-CTAAGCTATGGCTGTCACCAAGATTTATATTGTGTACTATTCCTTGC 175
|||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 ACTTCAAGCCCTACTAAGCAATGGCTGTCACCAAGATTTATATAGTGTACTATTCCTTGC 178
Query 176 ACGGCCACGTCGAGACAATGGCACGAGAGGTACTTCGGGGAGTAAACTCTGTTCCAGACG 235
||||||| ||||||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct 179 ACGGCCATGTCGAGACAATGGCACGAGAGGTTCTCCGAGGAGCAAACTCTGTTCCAGACG 238
Query 236 TGGAAGCAACACTTTGGCAAGTGCCAGAGACATTACCGGAGAAAATATTGGAGAAAGTGA 295
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 TGGAAGCAACACTCTGGCAAGTGCCAGAGACATTACCGGAGAAAATACTGGAGAAAGTGA 298
Query 296 AGGCCGTTCCAAGACCGGACGATGTGCCGGATATTCGACCAGAACAACTGGCGGAAGCCG 355
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 AGGCCGTTCCAAGACCGGACGATGTGGCGGATATTCGACCAGAACAACTGGCGGAAGCCG 358
Query 356 ACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTT 418
Query 416 TCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCAGGAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 TCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCGGGAC 478
Query 476 TCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGA 538
Query 536 CAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAAGTA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 539 CAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAGGCA 598
Query 596 TGTACGAGATGGGAGAGGTGAAAGGTGGTTCGCCTTATGGCTCAGGGACTTATGCAGCTG 655
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 599 TGTACGAGATGGGAGAGGTGAAAGGTGGTTCCCCGTATGGCTCAGGGACTTATGCAGCTG 658
Query 656 ATGGATCACGCGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACT 715
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGGATCACGGGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACT 718
Query 716 TTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAAATTCTAAACCATATCA 775
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 719 TTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAAAGTCTAAACCAAATCA 778
Query 776 ACTCTGTGTTTCCTATACTAAACAATCTGTAAATGTAAAGGTGAACACTGAAAATAAGAT 835
||||||| |||| |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 779 ACTCTGTATTTCATATACTAATCAATCTGTAAATGTGAAGGTGAATACTGAAAATAAGAT 838
Query 836 CGACATATACAGAGCAAAACACCGGTGTGTAAGCTAATGGTCAATAAATC 885
|||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 839 TGACATATACAGAGCAAAACATCTATGTGTAAGCTAATGGTCAACAAATC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5