BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59030.1
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496053 jgi|Araly1|496053|fgenesh2_kg.8__1869__AT5G59030.1 1064 0.0
> Ahg496053 jgi|Araly1|496053|fgenesh2_kg.8__1869__AT5G59030.1
Length=743
Score = 1064 bits (576), Expect = 0.0
Identities = 677/723 (94%), Gaps = 18/723 (2%)
Strand=Plus/Plus
Query 7 TTTTCCTCTCCTCCCAACCAAAACACAAGAGCCAAGAACAAAGAAACCATGGATCATGAT 66
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCAATCCTCCCAACCAAAACACAAGAGCCAAGAACAAAGAAACCATGGATCATGAT 60
Query 67 CACATGCATGGAATGCCTCGACcatcatcatcatcatcatcatcaccatcatccatGATG 126
||||||||||| ||| | | || || |||||||||||||||||||||||||||||
Sbjct 61 CACATGCATGGCATG--T----C-TC--CACCATCATCATCATCACCATCATCCATGATG 111
Query 127 AACAATGGATCCATGAACGAAGGAGGAGGACATCACCACATGAAGATGATGATGCACATG 186
||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 112 AACAATGGATCGATGAACGGAGGAGGAGGACATCCCCACATGAAGATGATGATGCACATG 171
Query 187 ACCTTCTTTTGGGGCAAGAACACGGAGGTTCTCTTCTCCGGTTGGCCCGGAACAAGCTCC 246
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACATTCTTTTGGGGCAAGAACACGGAGGTTCTCTTCTCCGGTTGGCCCGGAACAAGCTCC 231
Query 247 GGCATGTATGCTCTTTGTCTTATCTTTGTCTTCTTTCTCGCCGTCCTCACCGAATGGCTT 306
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 232 GGCATGTATGCTCTTTGTCTCATCTTTGTCTTCTTCCTCGCCGTCCTCACCGAATGGCTA 291
Query 307 GCTCATTCCTCTCTCCTCCGTGGCTCCACCGGAGATTCGGCTAATCGTGCCGCCGGGTTA 366
||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||| ||
Sbjct 292 GCTCATTCCTCTCTCCTTCGTGGCTCTACCGGAGATTCGGCTAACCGCGCCGCCGGGCTA 351
Query 367 ATCCAAACCGCCGTGTATACCCTCCGTATCGGCCTCGCCTATCTAGTCATGCTCGCCGTC 426
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 352 ATCCAAACCGCCGTGTATACCCTCCGTACCGGTCTTGCCTATCTAGTCATGCTCGCCGTC 411
Query 427 ATGTCGTTTAACGCCGGTGTGTTTCTCGTCGCTCTGGCCGGTCATGCCGTTGGTTTCATG 486
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 412 ATGTCGTTTAACGCCGGTGTGTTTCTCGTCGCTCTCGCCGGTCATGCCATTGGTTTCATG 471
Query 487 TTGTTCGGAAGCCAAACTTTCCGGAATACCTCCGATGACCGGAAAACTAACTATGTTCCT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTGTTCGGAAGCCAAACTTTCCGGAATACCTCCGATGACCGGAAAACTAACTATGTTCCT 531
Query 547 CCCTCAGGTTGTGCTTGTTGATGATAATATCA-AT--GCTTTATATATATGTATGGATTG 603
|| ||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct 532 CCTTCAGGTTGTGCTTGTTGATGATAATATTATATATGATTTATATATATGTATGGATTG 591
Query 604 ATCCATGCTTGTGATTCAAATTAAAGATCTAGGGTTTGTAGTTTTCTTGGTTATTTTATG 663
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 592 ATTCATGCTTGTGGTTCAAATTAAAGATCTAGGGTT-GTAGTTTTCTTGGTTATTGT--G 648
Query 664 GATT-GTTCTTGAGGTTCATGTGTGTGTGAATGTGAGGAGGAGGAATATTTGATATTTTC 722
|||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 649 GATTTGTTCTTGAGGTTCATGTGTGTG--AATGTGAGGAGGAGAAATATTTGATATTTTC 706
Query 723 TAT 725
|||
Sbjct 707 TAT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28935294003
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5