BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59050.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496051 jgi|Araly1|496051|fgenesh2_kg.8__1867__AT5G59050.1 1210 0.0
> Ahg496051 jgi|Araly1|496051|fgenesh2_kg.8__1867__AT5G59050.1
Length=1393
Score = 1210 bits (655), Expect = 0.0
Identities = 764/814 (94%), Gaps = 17/814 (2%)
Strand=Plus/Plus
Query 114 ctttttcttctAGACAAGAACAATCAAATGGAATCTACTGAACTACACGACATAGATTTC 173
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTTTTTTTTCTAGACAAGAATAATCAAATGGAATCTACTGAACTACACGACATAGATTTC 125
Query 174 ATTTCAAATCCTTTTACCTCCTTTTCTGAACCAACTTTCTTCACTCCAACCACAAGCTCT 233
|||||||| | | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 126 ATTTCAAA------T--C-CCTTTTCTGAGCCAACTTTCTTCACTCCAACCACAAGCTCT 176
Query 234 CTCCGACCCGACTTCGTATCCGACGAACCGGATTCACCAAAGGCA-AAAAACGAAGACGA 292
||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||
Sbjct 177 CTCCGACCCGACTTCGTATCCGACGAACCTGATTCACCAAAAGCACAAAAA-GAAGACGA 235
Query 293 AGAAGACGAGTACATCACCGAGTTGACTCGCCAGATGACTAACTATATGCTTCAAGACGA 352
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGAAGACGAGTACATCACCGAATTGACTCGCCAGATGACTAACTATATGCTTCAAGACGA 295
Query 353 TGAAAAGCATCAAAAGTCTTGTGGTAGTGGCTCTGGCTCGCCGCAATCGACTCTCTGGTC 412
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 296 TGAAAAGCATCAAAAGTCTTGTGGTGGTGGCTCTGGTTCGCCGCAATCGACTCTCTGGTC 355
Query 413 ACCATTTGCTTCAGGATTAAGCAGTCCAATAGGCCCTTCCCGTGAACCATCGCCGCCACT 472
|||||||||||| || || ||||||||||| | |||||||||||||||||||||||| ||
Sbjct 356 ACCATTTGCTTCCGGTTTGAGCAGTCCAATTGCCCCTTCCCGTGAACCATCGCCGCCGCT 415
Query 473 AACTCCGGCAACGGTACCGGTGGAGAAAATCATGACAAAGATTGATACAAAACCAGTAAC 532
|||||| || || | | ||||||||||||||||||| || || ||||||||||| |||||
Sbjct 416 AACTCCAGCGAC-G-A-CGGTGGAGAAAATCATGACGAATATCGATACAAAACCTGTAAC 472
Query 533 GATCCCTTTTCAATCAAAACAAGCTCTAATCGATGACCAGATCCGATCCATTCAAGCAAA 592
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GATACCTTTTCAATCAAAACAAGCTCTAATCGATGACCAGATCCGATCCATTCAAGCAAA 532
Query 593 CTTCCAGAAGATTAAAAAGGAGAAAGAGAAAGAGAGGCAACGCAACGCTGACGTTTTGGG 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTTCCAGAAGATCAAAAAGGAGAAAGAGAAAGAGAGGCAACGCAACGCTGACGTTTTGGG 592
Query 653 GCACAAAGCAAGAAACTACCACCACCTCCACCAGAACCAGAGACCT-AGGTCAGGCGTTA 711
|||| |||||| |||||||||||||||||||| |||||||| | ||||||||||| |
Sbjct 593 ACACAGAGCAAGGAACTACCACCACCTCCACCACCACCAGAGA-GTCAGGTCAGGCGTGA 651
Query 712 AGGCGGTGTTTGTTGACGGGTCGGGTTCAAGAACCGGGTCGGGTGGTACCGGAGTGTTCT 771
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 652 AGGCGGTGTTCGTTGATGGGTCGGGTTCAAGAACCGGGTCGGGTGGAACCGGAGTGTTCT 711
Query 772 TACCGCGTGGTCATGGTACCGTTGTGGAGTCACGCAAGAAATCAGGATGTTCAACAGTAA 831
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TACCACGTGGTCATGGTACCGTTGTGGAGTCACGCAAGAAATCAGGATGTTCAACAGTAA 771
Query 832 TAATACCAGCAAGAGTAGTTGAAGCCTTGAAAGTTCACTTTGACAAATTGGGTGTTCCTT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TAATACCAGCAAGAGTAGTTGAAGCCTTGAAAGTTCACTTTGACAAATTGGGTGTTCCTT 831
Query 892 CTACATTCTCTTCTGATA-TCCCTCCTTTTCATG 924
|||||||||||||||||| |||||||||||||||
Sbjct 832 CTACATTCTCTTCTGATAATCCCTCCTTTTCATG 865
Score = 632 bits (342), Expect = 2e-180
Identities = 457/508 (90%), Gaps = 25/508 (5%)
Strand=Plus/Plus
Query 918 TTTCATG-ATGCATTGTTGGTGTCCATGAACAACAAAAAGATCAAAAGTAACAAAAATAC 976
|||| || |||| ||||||||||||||||| |||||||| | |||||||||||||| |||
Sbjct 899 TTTCTTGAATGCTTTGTTGGTGTCCATGAAGAACAAAAACAACAAAAGTAACAAAAGTAC 958
Query 977 TTCATTATCTCGGGTACAAAGTGGATCACCGTACGAAATGGAGATGTCGGCAGAGAGCCA 1036
||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 959 TTCATCGTCTCGGGTACAAAGTGGATCACCGTACGTAATGGAGATGTCGGCCGAGAGCCA 1018
Query 1037 CCAAGAACCACCGGCGGATTTGCCACAGGAATGGACGTACTGATAAAACATTGGCACATG 1096
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1019 CCAAGAACCACCGGCGGATTTGCCACAGGAATGGACGTACTGATAAAACA-T-G--C-T- 1072
Query 1097 CTCCTGGTTGCTGCAGTTATAGGTTTTCAAAAGGTAGGGACTTTTCGGATTGAATATCTT 1156
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1073 CT--TGGTTGCTGCAGTTATAGGTTTTCAAAAGGTAGGGTCTTTTCGGATTGAATATCTT 1130
Query 1157 CTAGTGGGTCaaaataaaaataa-aatgctttcaaaaaccattattttttaattggaaat 1215
||||||| |||||||||||| || || ||||||||||||||||||||||| ||||||| |
Sbjct 1131 CTAGTGGATCAAAATAAAAA-AAGAAAGCTTTCAAAAACCATTATTTTTTTATTGGAAGT 1189
Query 1216 acatagattttaaaatttggtgattttttcttttattattGTGATAAAATCAATAATTCC 1275
| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1190 ATATAGATTTTAAAAGTTGGTGAAATTTTCTTTTATTATTGTGATAAAATCAATAATTCT 1249
Query 1276 TGTGATAAAAGAACAATAAAATGTTC--ATATATCCCATGCCTATTGTATGTAATAAGGG 1333
||||||||||||||||||||||| | |||||| |||||||||||||| | ||||||
Sbjct 1250 TGTGATAAAAGAACAATAAAATGAGCATATATATGCCATGCCTATTGTA-G---TAAGGG 1305
Query 1334 GTTGGTTGTTTTTATGTAAGATTCCTTGTAATAAAAGCATTATGCATCTCGCCAG----- 1388
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 ATTGTTTGTTTTTATGTAAGATTCCTTGTAATAAAAGCATTATGCATCTCGCCAGACGCC 1365
Query 1389 --TGTAATAAAAA-GCCTTTATTTGATT 1413
||||||||||| || |||||||||||
Sbjct 1366 AGTGTAATAAAAAAGCTTTTATTTGATT 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5