BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59080.1 Length=848 Score E Sequences producing significant alignments: (Bits) Value Ahg496048 jgi|Araly1|496048|fgenesh2_kg.8__1864__AT5G59080.1 1279 0.0 > Ahg496048 jgi|Araly1|496048|fgenesh2_kg.8__1864__AT5G59080.1 Length=790 Score = 1279 bits (692), Expect = 0.0 Identities = 760/793 (96%), Gaps = 4/793 (1%) Strand=Plus/Plus Query 14 CATCCCTTTTAGCAATATGTATATATAGCCCCATTGAAATCTTATTGTCATTACAAACAA 73 |||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||| Sbjct 1 CATCCCTTTTAGCATTATGTATAAATACCCCCATTGAGATCTTATTGTCATTACAAACAA 60 Query 74 CTTACAGAACTATTCTAACTCTCTTACGGAAGAAGAATCAAAGAGAATCAGATTAGAGTG 133 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTACAGAACTATTCTAAGTCTCTTACGGAAGAAGAATCAAAGAGAATCAGATTAGAGTG 120 Query 134 TGAGTTTTTAGAAGTTACTAAATGGAGGGTAAAGGACGAGTTGGCTCAtcttcttctact 193 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGAGTTTTT-GAAGTTACTAAATGGAGGGTAAAGGACGAGTTGGCTCATCTTCTTCTACT 179 Query 194 tcttcttcttTTACAGCCGAACTCTTCGGTTCCAAAGATCCTTCGCCACCATCTTCATCC 253 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 180 TCTTCTTCTTTCACAGCCGAACTCTTCGGTTCTAAAGATCCTTCGCCACCATCTTCATCC 239 Query 254 TCCGGCATCTTCTCCACCATGTTCCCTCATCCCTCCAAGGGTTCTGCAAGAGATGGTTCA 313 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 240 TCCGGCATCTTCTCCACCATTTTCCCTCATCCCTCCAAGGGTTCTGGAAGAGATGGTTCA 299 Query 314 AACTCCAAACATGGCTCACAAGCTCAACGTAGAGAATCTTTAAATGCTCAAGAAGACAGA 373 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 300 AACTCCAAACATGGCTCACAAGCTCAACGTAGAGAATCTTTAAATGCGCAAGAAGACAGA 359 Query 374 GTTGAGCCATGTCATCTAAGCTCTTCTCTTTACTACGGTGGTCAAGACGTATACGCTCGA 433 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 GTTGAGCCATGTCATCTTAGCTCTTCTCTTTACTACGGTGGTCAAGACGTATACTCTCGA 419 Query 434 TCCACCACCAACCAAACTTACCCTCCAGTTAAAAATGACCGTAGAAGAAGCGGAGAAGAC 493 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 420 TCCACCACCAACCAAACTTACCCTGCAGTTAAAAATGAGCGTAGAAGAAGCGGAGAAGAC 479 Query 494 GACGCTAATGGACAGAACCCGCAAGATGTTTCAAGAGGAAACTGGTGGCAAGGTTCTCTT 553 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GATGCTAATGGACAGAACTCGCAAGATGTTTCAAGAGGAAACTGGTGGCAAGGTTCTCTT 539 Query 554 TATTACTAAAGAACCACTTCCTTTAGTTTCTTTGTAAATCTCTCCAGGAACACC-TGAAG 612 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 540 TATTACTAAAGAACCACTTCCTTTAGTTTCTTTGTAAATCTCTCCAGGAAC-CCATGAAG 598 Query 613 CTCAAGCCAAGTACTAATATCTACTTAACCAAGACTTTGTATAAATAAGTTTATGCAGaa 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 599 CTCAAGCCAAGTACTAATATCTACTTAACCAAGACTTTGTATAAATAAGTTTATGCAGGA 658 Query 673 aaaaaaaGTTATTAGGAGATTTCTAGGTTAAGTAATAATATCGAAGAATTCTCCTAGTAG 732 |||||| |||||||||||||||| || ||||||||||||||| ||||| |||||||||| Sbjct 659 AAAAAA-GTTATTAGGAGATTTCAAGATTAAGTAATAATATCAAAGAAATCTCCTAGTAA 717 Query 733 TAGTGTCTTAAATAGATTTCTCTAGTACTTGTTATAATCAACTGTAACAATATTTACTCT 792 || ||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct 718 TAATGTCTCAAATAGATTTGTCTAGTACTTGTTATAAGCAACTGTATCAATATTTACTCT 777 Query 793 GTTTTTCTCTGTC 805 | ||||||||||| Sbjct 778 GCTTTTCTCTGTC 790 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31375160691 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5