BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59220.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496034 jgi|Araly1|496034|fgenesh2_kg.8__1850__AT5G59220.1 2372 0.0
Ahg887876 jgi|Araly1|887876|Al_scaffold_0048_9 1393 0.0
> Ahg496034 jgi|Araly1|496034|fgenesh2_kg.8__1850__AT5G59220.1
Length=1561
Score = 2372 bits (1284), Expect = 0.0
Identities = 1482/1575 (94%), Gaps = 24/1575 (2%)
Strand=Plus/Plus
Query 1 AAAGCTTCCATGGCTAATCTTGTTTAAGcttctcttcttcttctctctcCTGTGTCTCGT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAAGCTTCCATGGCTAATCTTGTTTAAGCTTCTCTTCTTCTTCTCTGTCCTGTGTCTCGT 60
Query 61 TCACTAG--ttttttt-tCGGGGGAGAGTGATGGAGTGTGTTTGTTGAATAGTTTTGACG 117
| ||||| ||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct 61 TTACTAGTTTTTTTTTCTCGGGGGAGAGTGATGAAGTGTGTATGTTGAACAGTTTCGACG 120
Query 118 ATCACATGGCTGAGATTTGTTACGAGAACGAGACTATGATGATTG-AAACGACGGCGACG 176
||| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 121 ATCGCATGGCTGAGATTTGTTACGAGAACGAGGCTATGATGA-CGAAAACGACGGCGACG 179
Query 177 GTGGTGAAGAAGGCAACGACGACAACGAGGAGACGAGAACGGAGCTCGTCTCAAGCAGCG 236
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGGTGAAGAAGACGACGACGACAACGAGGAGACGAGAACGGAGCTCGTCTCAAGCAGCG 239
Query 237 AGAAGAAGGAGAATGGAGATCCGGAGGTTTAAGTTTGTTTCCGGCGAACAAGAACCTGTC 296
||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 240 AGAAGGAGGAGAATGGAGATCCGGAGGTTTAAGTTTGTTTCCGGTGAACAAG-A----T- 293
Query 297 TTCGTCGACGGTGACTTACAGAGGCGGAGGAGAAGAGAATCCACCGTCGCAGCCTCCACC 356
|||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||
Sbjct 294 TTCGTCGACGGTGACTTACAGAAGCGGAGGAGACGGGAATCCACCGTCGCAGCCTCCGCC 353
Query 357 TCCACCGTGTTTTACGAAACGGCGAAGGAAGTTGTCGTCCTATGCGAGTCTCTTAGTTCA 416
||| |||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 354 TCCGCCGTGTTTTACGAAACGGCGAAGGAAGTTGTCGTTTTATGTGAGTCTCTGAGTTCT 413
Query 417 ACGGTTGTGGCATTGCCTGATCCTGAAGCTTATCCTAAATACGGCGTCGCTTCAGTCTGT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 ACGGTTGTGGCATTGCCTGATCCTGAAGCTTATCCTAAATACGGCGTCGCTTCGGTCTGT 473
Query 477 GGAAGAAGACGTGAAATGGAAGACGCCGTCGCTGTGCATCCGtttttttCCCGTCATCAG 536
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 474 GGAAGAAGACGGGAAATGGAAGACGCCGTCGCTGTACATCCATTTTTTTCCCGTCAACAG 533
Query 537 ACGGAATATTCATCCACCGGATTTCACTATTGCGGCGTTTACGATGGCCATGGCTGTTCC 596
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 534 ACGGAATATTCCTCCTCCGGATTTCACTACTGCGGCGTTTACGATGGCCATGGCTGTTCC 593
Query 597 CATGTAGCGATGAAATGTAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCT 656
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CATGTAGCGATGAGATGCAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCT 653
Query 657 GATGCTGACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATGCTGACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTT 713
Query 717 GCGTTGAACGCCGATGGTGCGGCAAAATGCCGGTGCGAGCTTCAGAGGCCGGACTGCGAC 776
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||
Sbjct 714 GCGTTGAACGCCGATGGTGCGGCGAAATGCCGTTGCGAGCTTCAGCGGCCGGACTGTGAC 773
Query 777 GCGGTGGGATCCACTGCGGTTGTGTCTGTCCTTACGCCGGAGAAAATCATCGTGGCGAAT 836
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 774 GCGGTGGGATCCACCGCGGTTGTGTCTGTTCTCACGCCGGAGAAAATCATCGTGGCAAAT 833
Query 837 TGCGGTGACTCACGTGCCGTTCTCTGTCGTAACGGCAAAGCCATTGCTTTATCCTCCGAT 896
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 834 TGCGGTGACTCACGTGCCGTTCTGTGCCGTAACGGGAAGGCCATTGCTTTATCCTCCGAT 893
Query 897 CATAAGCCAGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGTGTTATC 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 894 CATAAGTCAGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGGGTTATC 953
Query 957 TACTGGGATGGCCCACGTGTCCTTGGAGTACTTGCAATGTCACGAGCCATTGGAGATAAT 1016
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 954 TACTGGGATGGCCCACGTGTCCTTGGAGTTCTTGCAATGTCACGAGCCATTGGAGATAAT 1013
Query 1017 TACTTGAAGCCGTATGTAATCAGCAGACCGGAGGTAACCGTGACGGACCGGGCCAACGGA 1076
|||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1014 TACTTGAAACCGTATGTAATCAGCAAACCGGAGGTAACCGTGACGGACCGAGTCAACGGA 1073
Query 1077 GACGATTTTCTTATTCTCGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCA 1136
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GACGATTTCCTTATTCTCGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCA 1133
Query 1137 TGTAGCGTCGTTCGAATGTGTTTGAGAGGAAAAGTCAATGGTCAAGTATCATCATCACCG 1196
|||||||||||||||||||||||||| ||||||| |||||||||| ||||| | ||||||
Sbjct 1134 TGTAGCGTCGTTCGAATGTGTTTGAGTGGAAAAGCCAATGGTCAACTATCAACCTCACCG 1193
Query 1197 GAAAGGGAAATGACAGGTGTCGGCGCCGGGAATGTGGTGGTTGGAGGAGGAGATTTGCCA 1256
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1194 GAAAGGGAAATGACAGGTGTCGGCGCCGGGAATGTGGTGGTCGGAGGAGGGGATTTGCCG 1253
Query 1257 GATAAAGCGTGTGAGGAGGCGTCGCTGTTGCTGACGAGGCTTGCGTTGGCTAGACAAAGT 1316
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1254 GATAAAGCGTGTGAGGAGGCGTCGCTGTTGCTGACGAGGCTTGCATTGGCTAGACAAAGT 1313
Query 1317 TCGGACAACGTAAGTGTTGTGGTGGTTGATCTACGACGAGACACGTAGTTGTAT-TTGTC 1375
||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||
Sbjct 1314 TCGGACAACGTAAGTGTTGTGGTGGTTGATCTAAGACGAGACACGTAGTTGTTTCTTCTC 1373
Query 1376 TCTCTC----GTAAtgtttgttgttttttgtcctgagtcatcgacttttgggctttttct 1431
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 1374 TCTCTCTCTCGTAATGTTTGTT-TTTTT-GTCCTGAGTCATCGACTTTTGGGCTTTCTCT 1431
Query 1432 tttaaccttttttgCTCTTCGGTGTAAGACAACGAAGGGTTTTTAATTTAGCTTGACTAT 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1432 TTTAACCTTTTTTGCTCTTCGGTGTAAGACAACGAAGGGTTTTTAATTTAGCTTGATTTT 1491
Query 1492 GGGTTATGTCAGTCACTGT-GTTGAATCGCGGTTTAGATCTACAAAGATTTTCACCAGTA 1550
||||||||||| | ||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 1492 GGGTTATGTCA--C--TGTAGT-GAATCGCGGTTTAGATCTACAAAGATTTTCACCGGTA 1546
Query 1551 GTGAAAATGGTAAAA 1565
|||||||||||||||
Sbjct 1547 GTGAAAATGGTAAAA 1561
> Ahg887876 jgi|Araly1|887876|Al_scaffold_0048_9
Length=879
Score = 1393 bits (754), Expect = 0.0
Identities = 841/883 (95%), Gaps = 6/883 (1%)
Strand=Plus/Plus
Query 484 GACGTGAAATGGAAGACGCCGTCGCTGTGCATCC-GtttttttCCCGTCATCAGACGGAA 542
|||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1 GACGAGAAATGGAAGACGCCGTCGCTGTACATCCACTTTTTTTCCCGTCAACAGACGGAA 60
Query 543 TATTCATCCACCGGATTTCACTATTGCGGCGTTTACGATGGCCATGGCTGTTCCCATGTA 602
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TATTCCTCCACCGGATTTCACTACTGCGGCGTTTACGATGGCCATGGCTGTTCCCATGTA 120
Query 603 GCGATGAAATGTAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCTGATGCT 662
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGATGAGATGCAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCTGATGCT 180
Query 663 GACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTTGCGTTG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTTGCGTTG 240
Query 723 AACGCCGATGGTGCGGCAAAATGCCGGTGCGAGCTTCAGAGGCCGGACTGCGACGCGGTG 782
||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||
Sbjct 241 AACGCCGATGGTGCGGCGAAATGCCGTTGCGAGCTTCAGCGGCCGGACTGTGACGCGGTG 300
Query 783 GGATCCACTGCGGTTGTGTCTGTCCTTACGCCGGAGAAAATCATCGTGGCGAATTGCGGT 842
|||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 301 GGATCCACCGCGGTTGTGTCTGTTCTCACGCCGGAGAAAATCATCGTGGCAAATTGCGGT 360
Query 843 GACTCACGTGCCGTTCTCTGTCGTAACGGCAAAGCCATTGCTTTATCCTCCGATCATAAG 902
|||||||| |||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 361 GACTCACGCGCCGTTCTGTGCCGTAACGGGAAGGCCATTGCTTTATCCTCCGATCATAAG 420
Query 903 CCAGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGTGTTATCTACTGG 962
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CCCGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGGGTTATCTACTGG 480
Query 963 GATGGCCCACGTGTCCTTGGAGTACTTGCAATGTCACGAGCCATTGGAGATAATTACTTG 1022
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 481 GATGGCCCACGTGTCCTTGGAGTACTTGCAATGTCACGAGCCATTG-A--TAATTACTTG 537
Query 1023 AAGCCGTATGTAATCAGCAGACCGGAGGTAACCGTGACGGACCGGGCCAACGGAGACGAT 1082
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 538 AAACCGTATGTAATCAGCAAACCGGAGGTAACCGTGACAGACCGGGCCAACGGAGACGAT 597
Query 1083 TTTCTTATTCTCGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCATGTAGC 1142
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCTTATTCTAGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCATGTAGC 657
Query 1143 GTCGTTCGAATGTGTTTGAGAGGAAAAGTCAATGGTCAAGTATCATCATCACCGGAAAGG 1202
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 658 GTCGTTCGAATGTGTTTGAGAGGAAAAGTCAATGGTCAACTATCATCCTCACCGGAAATG 717
Query 1203 GAAATGACAGGTGTCGGCGCCGGGAATGTGGTGGTTGGAGGAGGAGATTTGCCAGATAAA 1262
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 718 GAAATGACAGGTCTCGGCGCCGGGAATGTGGTGGTCGGAGGAGGAGATTTGCCGGATAAA 777
Query 1263 GCGTGTGAGGAGGCGTCGCTGTTGCTGACGAGGCTTGCGTTGGCTAGACAAAGTTCGGAC 1322
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 GCGTGTGAGGAGGCTTCGCTGTTGCTGACGAGGCTTGCATTGGCTAGACAAAGTTCGGAC 837
Query 1323 AACGTAAGTGTTGTGGTGGTTGATCT-ACGACGAGACACGTAG 1364
|||||||||||||||||||||||||| | ||||||||||||||
Sbjct 838 AACGTAAGTGTTGTGGTGGTTGATCTTA-GACGAGACACGTAG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5