BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59240.1 Length=857 Score E Sequences producing significant alignments: (Bits) Value Ahg496032 jgi|Araly1|496032|fgenesh2_kg.8__1848__AT5G59240.1 1203 0.0 > Ahg496032 jgi|Araly1|496032|fgenesh2_kg.8__1848__AT5G59240.1 Length=802 Score = 1203 bits (651), Expect = 0.0 Identities = 771/825 (93%), Gaps = 24/825 (3%) Strand=Plus/Plus Query 9 TTAAACCTCTAAAGCTCGTGAGAACCAAAAGCTTGAATCAAACGCTTTTGAAATCATGGG 68 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 TTAAACCTCTGAAGCTCGTGAGAACAAAAAGCTTGAATCAAACGCTTTTGAAATCATGGG 60 Query 69 TATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTAAGCAAAAAATGTGGAG 128 ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 61 TATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTCAGCAGAAGATGTGGAG 120 Query 129 GAAGAAGCGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAA 188 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAAGAAGAGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAA 180 Query 189 GACGGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGA 248 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GACAGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGA 240 Query 249 TACTGGAAACTTCTCGTGGGGAAGTGAAGCTGTGACCCGCAAGACTAGGATCTTGGATGT 308 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 241 TACTGGAAACTTCTCGTGGGGAAGCGAAGCTGTGACCCGTAAGACTAGGATCTTGGATGT 300 Query 309 GGCGTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTAT 368 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGCTTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTAT 360 Query 369 TGTTCAAGTTGATGCTGCTCCATTCAAGCAAGGGTATCTCCAACACTATGGAGTTGATAT 428 ||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 361 TGTTCTAGTTGATGCTGCTCCGTTTAAACAAGGGTATCTCCAACACTATGGAGTTGATAT 420 Query 429 TGGTCGCAAGAAGAAAGGAGAGGCCGTTACCACTGAGGAAGTGAAGAAGAGCAATCATGT 488 ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 421 TGGTCGCAAGAAGAAAGGAGATGCAGTAACCACTGAGGAAGTGAAGAAGAGCAATCATGT 480 Query 489 TCAAAGGAAGCTGGAGATGCGACAAGAAGGCAGAGCACTTGACTCGCACCTTGAAGAGCA 548 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 481 TCAAAGGAAGCTGGAGATGCGACAAGAAGGCCGAGCACTTGACTCGCACCTTGAAGAGCA 540 Query 549 GTTTAGCAGTGGAAGGTTACTTGCATGTATCGCATCAAGACCCGGACAATGTGGTCGTGC 608 |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| Sbjct 541 GTTTAGCAGTGGAAGGTTGCTTGCATGTATCGCATCAAGACCCGGACAAAGTGGCCGTGC 600 Query 609 TGATGGGTACATATTAGAAGGTAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAA 668 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 601 TGATGGGTACATATTGGAAGGAAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAA 660 Query 669 GAAGGGCAAGAATGCTGGTGCTGCATAAGATACAAAACTTTCGATTGGGATTTTACTTAC 728 |||||||||||||||||||||||||||||| ||||||| ||| ||| | | | Sbjct 661 GAAGGGCAAGAATGCTGGTGCTGCATAAGAAACAAAAC-----ATT----TTTGA-T--C 708 Query 729 GTTTTTGATCTTGAAAATTTGAAAAGCTTTATTCATTCTTTTGTTGAGTT-AGAGTTTGC 787 || ||| | || ||||||| ||||| |||||||||||||||| ||||||||| Sbjct 709 -TT---GATA--G----TT-GAAAAGCCTTATTTATTCTTTTGTTGAGTTTAGAGTTTGC 757 Query 788 ATTGAGAGATCTTCATGTTTATGGATTTTGATCATTTATAGTCAA 832 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 758 ATTGAGAGATCTTCATGTTTATGGATATTGATCATTTATAGTCAA 802 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31718266944 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5