BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59250.1
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950641 jgi|Araly1|950641|scaffold_802528.1 2892 0.0
> Ahg950641 jgi|Araly1|950641|scaffold_802528.1
Length=1721
Score = 2892 bits (1566), Expect = 0.0
Identities = 1672/1723 (97%), Gaps = 8/1723 (0%)
Strand=Plus/Plus
Query 46 TTGTCTCACTCCGATCCGATCATGGCTTTCGCTGTCTCGGTTCAGTCACATTTCGCAATC 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCTCACTCCGATCCGATCATGGCTTTCGCTGTCTCGGTTCAGTCACATTTCGCAATC 60
Query 106 AGAG-CGTTAAAACGAGACCACTTC---AAGAACCCTTCTCCTCGTACTTTCTGCTCGTG 161
|||| | |||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct 61 AGAGAC-TTAAAACGAGACCAGTTCAAGAAGAACCCATCTCCGCGTACTTTCTGCTCGTG 119
Query 162 TTTTAAATCGAGGCCTGACTCGTCTTACCTTAGTTTAAAGGAACGTACTTGCTTCGTTTC 221
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 120 TTTTAAATCGAGGTCTGACTCGTCTTACCTAAGTTTAAAGGAACGTACTTGCTTGGTTTC 179
Query 222 CAAACCGGGTTTAGTCACTACTAGATACAGA-CATATATTCCAGGTCGGAGCTGAGACGG 280
||| | ||||||||||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct 180 CAAGCTGGGTTTAGTCACTACTAGATACAGAGC-TAAATTCCAGGTCGGAGCTGGGACGG 238
Query 281 GAGGAGAGTTCGCCGACAGTGGAGAAGTAGCTGATTCGCTTGCTTCTGATGCACCAGAGT 340
|||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 239 GAGGAGAGTTAGCCGACGGTGGAGAAGTAGCTGATTCGATTGCTTCTGATGCATTAGAGT 298
Query 341 CATTTTCTTGGTCTTCTGTGATACTCCCGTTTATCTTCCCGGCTTTGGGAGGATTATTGT 400
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 299 CATTTTCTTGGTCTTCCGTGATACTCCCGTTTATCTTCCCGGCTTTGGGAGGACTGTTGT 358
Query 401 TTGGGTATGACATTGGGGCTACCTCCGGTGCTACGCTCTCACTTCAGTCACCTGCGCTTA 460
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 359 TCGGGTATGACATTGGGGCCACCTCTGGTGCTACGCTCTCACTTCAGTCACCTGTGCTTA 418
Query 461 GCGGAACTACATGGTTTAACTTCTCACCTGTTCAGCTAGGACTTGTGGTTAGCGGATCCT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCGGAACTACATGGTTTAACTTCTCACCTGTTCAGCTAGGACTTGTGGTTAGCGGATCCT 478
Query 521 TGTATGGAGCCCTTCTTGGCTCAATTTCTGTCTATGGCGTTGCTGATTTCCTTGGAAGAA 580
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATATGGAGCCCTTCTTGGCTCAATTTCTGTCTATGGCGTTGCTGATTTCCTTGGAAGAA 538
Query 581 GGCGGGAACTTATTATAGCTGCTGTTCTCTATCTCCTCGGGTCTCTGATCACTGGCTGTG 640
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 GGCGGGAACTTATTATAGCTGCTGTTCTCTATCTCCTCGGGTCTCTGATTACTGGCTGTG 598
Query 641 CCCCTGATCTTAATATTCTCTTAGTTGGAAGGCTTCTCTATGGCTTTGGTATTGGTTTGG 700
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 CCCCTGATCTTAATATTCTCTTAGTTGGAAGGCTTCTCTATGGTTTTGGTATTGGTTTGG 658
Query 701 CAATGCATGGGGCTCCCCTCTATATTGCTGAGACATGCCCATCTCAAATCCGTGGAACTT 760
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 659 CAATGCATGGGGCTCCCCTCTATATCGCTGAGACATGCCCATCTCAAATCCGGGGAACTT 718
Query 761 TGATATCTCTGAAAGAACTCTTCATCGTATTGGGAATTTTGTTGGGTTTTTCTGTTGGAA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGATATCTCTGAAAGAACTCTTCATCGTATTGGGAATTTTGTTGGGTTTTTCTGTTGGAA 778
Query 821 GCTTCCAGATTGATGTAGTTGGAGGGTGGCGTTACATGTATGGATTTGGTACGCCTGTTG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCTTCCAGATTGATGTAGTTGGAGGGTGGCGTTACATGTATGGATTTGGTACGCCTGTTG 838
Query 881 CTTTGCTGATGGGACTAGGCATGTGGAGTCTCCCTGCATCTCCTCGCTGGTTGCTGCTTA 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTTTGCTGATGGGACTAGGCATGTGGAGTCTCCCTGCATCTCCTCGCTGGTTGCTGCTTA 898
Query 941 GAGCTGTCCAAGGTAAAGGACAATTACAAGAATACAAAGAGAAGGCCATGCTTGCCCTCA 1000
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GAGCTGTCCAAGGTAAAGGACAATTACAAGAGTACAAAGAGAAGGCCATGCTTGCCCTCA 958
Query 1001 GCAAATTACGTGGCAGACCTCCAGGTGATAAAATCTCAGAGAAGTTGGTAGATGATGCCT 1060
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 959 GCAAATTACGTGGCAGACCTCCAGGTGATAAAATTTCGGAGAAGTTAGTAGATGATGCCT 1018
Query 1061 ATTTATCTGTGAAAACGGCCTATGAAGATGAGAAATCTGGGGGAAACTTCCTGGAAGTAT 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATTTATCTGTGAAAACGGCCTATGAAGATGAGAAATCTGGGGGAAACTTCCTGGAAGTAT 1078
Query 1121 TCCAAGGGCCTAATTTGAAAGCTTTGACAATTGGTGGAGGTTTAGTCCTCTTCCAACAGA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCCAAGGGCCTAATTTGAAAGCTTTGACAATTGGTGGAGGTTTAGTCCTCTTCCAACAGA 1138
Query 1181 TAACTGGACAGCCTAGTGTTCTTTATTATGCGGGTTCGATTCTTCAGACTGCTGGATTCT 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TAACTGGACAGCCTAGTGTTCTTTATTATGCGGGTTCGATTCTTCAGACTGCTGGATTCT 1198
Query 1241 CTGCTGCTGCTGATGCAACTCGAGTCTCTGTTATTATTGGTGTTTTCAAGTTACTGATGA 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTGCTGCTGCTGATGCAACTCGAGTCTCTGTTATTATTGGTGTTTTCAAGTTACTGATGA 1258
Query 1301 CATGGGTAGCTGTTGCGAAAGTTGATGATCTCGGCAGACGACCTTTACTGATTGGAGGTG 1360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 CATGGGTAGCTGTTGCGAAAGTTGATGATCTCGGCAGACGACCATTACTGATTGGAGGTG 1318
Query 1361 TCAGCGGCATTGCGTTGTCCTTGTTTCTACTGTCAGCATACTACAAGTTTCTCGGAGGCT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCAGCGGCATTGCGTTGTCCTTGTTTCTACTGTCAGCATACTACAAGTTTCTCGGAGGCT 1378
Query 1421 TTCCCCTTGTCGCTGTTGGTGCACTGCTTCTCTATGTTGGTTGTTACCAGATCTCATTTG 1480
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTCCCCTGGTCGCCGTTGGTGCACTGCTTCTCTATGTTGGTTGTTACCAGATCTCATTTG 1438
Query 1481 GACCCATCAGCTGGCTAATGGTGTCAGAGATTTTCCCGCTCCGCACAAGAGGGAGAGGGA 1540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1439 GACCCATCAGCTGGCTAATGGTGTCAGAGATTTTCCCGCTTCGCACAAGAGGGAGAGGGA 1498
Query 1541 TCAGTCTTGCAGTTCTTACAAACTTTGGCTCCAATGCTATTGTGACATTTGCATTTTCAC 1600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1499 TCAGTCTTGCAGTTCTTACAAACTTTGGCTCCAATGCTATTGTGACCTTTGCATTTTCAC 1558
Query 1601 CTTTAAAGGAATTTCTTGGAGCCGAGAATCTTTTCCTTCTCTTTGGGGGCATAGCACTGG 1660
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1559 CCTTAAAGGAATTTCTTGGAGCCGAGAATCTTTTCCTTCTCTTTGGGGCCATAGCACTGG 1618
Query 1661 TATCACTGCTGTTTGTAATACTAGTAGTTCCAGAGACCAAGGGTCTCAGCTTGGAAGAAA 1720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TATCACTGCTGTTTGTGATACTAGTAGTTCCAGAGACCAAGGGTCTCAGCTTGGAAGAAA 1678
Query 1721 TTGAATCAAAAATCTTGAAGTGAAACGTTGAAGAA-CATATTT 1762
||||||||||||||||||| ||||| |||||| || ||| |||
Sbjct 1679 TTGAATCAAAAATCTTGAAATGAAATGTTGAAAAAACATGTTT 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5