BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59310.1
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950674 jgi|Araly1|950674|scaffold_802561.1 575 1e-163
Ahg496059 jgi|Araly1|496059|fgenesh2_kg.8__1875__AT5G59320.1 514 3e-145
Ahg917675 jgi|Araly1|917675|Al_scaffold_0008_2426 318 3e-86
> Ahg950674 jgi|Araly1|950674|scaffold_802561.1
Length=382
Score = 575 bits (311), Expect = 1e-163
Identities = 360/384 (94%), Gaps = 2/384 (1%)
Strand=Plus/Plus
Query 59 CCAAAAGAGAAGAGCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTT 118
|||||| || | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CCAAAAAAG-A-AGCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTT 58
Query 119 GACAGTGTTCATCGTTGCATCAGTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAG 178
||| |||||| ||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 59 GACTGTGTTCGTCGTTGCATCAGTAGATGCAGCAATCACATGCGGCACAGTGGCGAGTAG 118
Query 179 CTTGAGTCCATGTCTAGGCTACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGC 238
||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 CTTGAGTCCGTGTCTAAGCTACCTATCAAAAGGTGGGGTGGTGCCACCTCCGTGCTGTGC 178
Query 239 AGGAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAG 298
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 179 AGGAGTCAAAAAGTTGAACGGTCTGGCTCAAACCACACCGGACCGCCAACAAGCATGCCG 238
Query 299 ATGCTTACAGTCCGCTGCAAAAGGGGTTAATCCAAGTCTAGCCTCTGGCCTTCCTGGAAA 358
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTGCTTACAGGCCGCTGCAAAAGGGGTTAATCCAAGTCTAGCCTCTGGCCTTCCTGGAAA 298
Query 359 GTGCGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCATCAAGTG 418
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 299 GTGTGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACTAACTGCGCAACCATCAAGTG 358
Query 419 AAGTGGGGAATAACGACATCATTT 442
|||||||| || ||||||| ||||
Sbjct 359 AAGTGGGGGATTACGACATGATTT 382
> Ahg496059 jgi|Araly1|496059|fgenesh2_kg.8__1875__AT5G59320.1
Length=510
Score = 514 bits (278), Expect = 3e-145
Identities = 409/470 (87%), Gaps = 17/470 (4%)
Strand=Plus/Plus
Query 4 ATCCAACAAC-AAAACACAAGCGTAGAAAACAAAACTCAACTAATTGTGTTATCACCCAA 62
||||| |||| ||||||||||| || ||| ||||| |||||||||| |||||||| ||||
Sbjct 4 ATCCACCAACAAAAACACAAGCTTATAAAGCAAAAATCAACTAATTTTGTTATCAACCAA 63
Query 63 AAGAGAAGAGCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTTGACA 122
| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 64 CA-AGAAGAACAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAACG 122
Query 123 GTGTTCATCGTTGCATCAGTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAGCTTG 182
|||| ||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 123 GTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCTTG 182
Query 183 AG-TCCATGT-CTAGGCTACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGCAG 240
| ||||||| | | |||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 183 -GCTCCATGTGC-AACCTACCTATCAAAAGGTGGGTTGGTGCCACCTCCGTGTTGTGCAG 240
Query 241 GAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAGAT 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 241 GAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCAGACCGCCAACAAGCATGCCGAT 300
Query 301 GCTTACAGTCCGCTGCAAA-AGG------GGT-T-AATCCAAGTCTAGCCTCTGGCCTTC 351
|| |||||||| |||| || || ||| | || ||||||||||||||||||||||
Sbjct 301 GCATACAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTC 360
Query 352 CTGGAAAGTGCGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCA 411
|||||||||||||||||||||| |||||||||||||||| |||||| |||||| || ||
Sbjct 361 CTGGAAAGTGCGGTGTTAGCATTCCCTATCCCATCTCCATGAGCACTAACTGCAACAACA 420
Query 412 TCAAGTGAAGTGGG-GAATAACGACATCATTTGCCTGAAGAGTATGGTTT 460
||||||||| ||| | || || |||||||||| | |||||||||||||
Sbjct 421 TCAAGTGAAATGGAAGCTTA-CGTCATCATTTGCGTTAAGAGTATGGTTT 469
> Ahg917675 jgi|Araly1|917675|Al_scaffold_0008_2426
Length=348
Score = 318 bits (172), Expect = 3e-86
Identities = 294/351 (84%), Gaps = 15/351 (4%)
Strand=Plus/Plus
Query 81 ATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTTGACAGTGTTCATCGTTGCATCA 140
|||||||| ||| | | |||||||| |||||| |||||||| |||| ||| |||||||||
Sbjct 1 ATGGCTTTGGCTCTCAAGTTCTTCATATGCTTCGTTTTGACGGTGTGCATAGTTGCATCA 60
Query 141 GTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAGCTTGAG-TCCATGTCT-AGGCT 198
|| ||||||||||| |||||| |||||||| ||||| |||| | ||||||| | | ||
Sbjct 61 GTAGATGCAGCAATCTCATGTGCCACAGTGGTAAGTAACTTG-GCTCCATGTGTCA-ACT 118
Query 199 ACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGCAGGAG-TCAAAAAGTTGAAC 257
|||||||||| ||||| ||||| || || ||| || | ||||| || |||||||||||
Sbjct 119 ACCTATCAAAAGGTGGTGTGGTACCGGATCTGTGTTGCGAAGGAGTTC-AAAAGTTGAAC 177
Query 258 GGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAGATGCTTACAGTCCGCTGCA 317
|||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||
Sbjct 178 GGTATGGCTCAAACCACACCGGACCGCCAACAAGCATGCAAATGCCTACAGTCCACTGCA 237
Query 318 AAAGG-------GGT-T-AATCCAAGTCTAGCCTCTGGCCTTCCTGGAAAGTGCGGTGTT 368
|| || ||| | || ||||||||||||||||| |||||||||||||||||||||
Sbjct 238 AAGGGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTGGAAAGTGCGGTGTT 297
Query 369 AGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCATCAAGTGA 419
||||| ||||||||||| ||| |||||| ||||||| || | ||||||||
Sbjct 298 AGCATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCAAGTGA 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23064364785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5