BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59320.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496059 jgi|Araly1|496059|fgenesh2_kg.8__1875__AT5G59320.1 732 0.0
Ahg917675 jgi|Araly1|917675|Al_scaffold_0008_2426 383 1e-105
Ahg950674 jgi|Araly1|950674|scaffold_802561.1 355 2e-97
> Ahg496059 jgi|Araly1|496059|fgenesh2_kg.8__1875__AT5G59320.1
Length=510
Score = 732 bits (396), Expect = 0.0
Identities = 455/484 (94%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 1 CATATCCAACAACAAAAACATAAGCTAAGAAAACGAAACTCAACTAATTTTGTTATCACC 60
|||||||| ||||||||||| ||||| | ||| | ||| ||||||||||||||||||| |
Sbjct 1 CATATCCACCAACAAAAACACAAGCTTATAAAGCAAAAATCAACTAATTTTGTTATCAAC 60
Query 61 CAAAAAGAAGTTCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAA 120
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACAAGAAGAACAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAA 120
Query 121 CGGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCT 180
Query 181 TGGCTCCATGTGCAACCTATCTATCAAAAGGTGGGTTGGTGCCACCTTCATGTTGTGCAG 240
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 181 TGGCTCCATGTGCAACCTACCTATCAAAAGGTGGGTTGGTGCCACCTCCGTGTTGTGCAG 240
Query 241 GAGTCAAAACTTTGAACAGTATGGCTAAAACCACACCAGACCGCCAACAAGCTTGCAGAT 300
||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 241 GAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCAGACCGCCAACAAGCATGCCGAT 300
Query 301 GCATCCAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCATACAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTC 360
Query 361 CTGGAAAGTGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAACA 420
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 361 CTGGAAAGTGCGGTGTTAGCATTCCCTATCCCATCTCCATGAGCACTAACTGCAACAACA 420
Query 421 TCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGTTTACCAGAAGT 480
|||||||||||||||||||||||| || ||| | |||||||||||||||||| || ||||
Sbjct 421 TCAAGTGAAATGGAAGCTTACGTCATCATTT-G-CGTTAAGAGTATGGTTTAACATAAGT 478
Query 481 ACTA 484
||||
Sbjct 479 ACTA 482
> Ahg917675 jgi|Araly1|917675|Al_scaffold_0008_2426
Length=348
Score = 383 bits (207), Expect = 1e-105
Identities = 306/353 (87%), Gaps = 10/353 (3%)
Strand=Plus/Plus
Query 81 ATGGCTTTCGCTTTGAGGTTCTTCACATGCCTT-GTTTTAACGGTGTGCATAGTTGCATC 139
|||||||| ||| | | |||||||| ||| ||| ||||| ||||||||||||||||||||
Sbjct 1 ATGGCTTTGGCTCTCAAGTTCTTCATATG-CTTCGTTTTGACGGTGTGCATAGTTGCATC 59
Query 140 AGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCTTGGCTCCATGTG-CAACCT 198
||| ||||| ||||||||||||| |||||||| | ||| |||||||||||||| ||| ||
Sbjct 60 AGTAGATGCAGCAATCTCATGTGCCACAGTGGTAAGTAACTTGGCTCCATGTGTCAA-CT 118
Query 199 ATCTATCAAAAGGTGGGT-TGGTGCCACCTTC-ATGTTGTGCAGGAG-TCAAAACTTTGA 255
| |||||||||||| ||| |||| || || ||||| | ||||| |||||| ||||
Sbjct 119 ACCTATCAAAAGGT-GGTGTGGTACC-GGATCTGTGTTGCGAAGGAGTTCAAAA-GTTGA 175
Query 256 ACAGTATGGCTAAAACCACACCAGACCGCCAACAAGCTTGCAGATGCATCCAGTCCACTG 315
|| |||||||| |||||||||| |||||||||||||| |||| |||| | ||||||||||
Sbjct 176 ACGGTATGGCTCAAACCACACCGGACCGCCAACAAGCATGCAAATGCCTACAGTCCACTG 235
Query 316 CGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTCCTGGAAAGTGCGGTG 375
| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 236 CAAAGGGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTGGAAAGTGCGGTG 295
Query 376 TTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAACATCAAGTGA 428
|||||||||| ||||| || ||| |||||||||||||| ||||| ||||||||
Sbjct 296 TTAGCATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCAAGTGA 348
> Ahg950674 jgi|Araly1|950674|scaffold_802561.1
Length=382
Score = 355 bits (192), Expect = 2e-97
Identities = 318/376 (85%), Gaps = 19/376 (5%)
Strand=Plus/Plus
Query 62 AAAAAGAAGTTCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAAC 121
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4 AAAAAGAAG--CAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTGAC 61
Query 122 GGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGC-AGGTAGCT 180
|||| | | ||||||||||| ||||| |||||| |||| ||||||||||| || |||||
Sbjct 62 TGTGTTCGTCGTTGCATCAGTAGATGCAGCAATCACATGCGGCACAGTGGCGAG-TAGCT 120
Query 181 TG-GCTCCATGTGC-AACCTATCTATCAAAAGGTGGGTTGGTGCCACCTTCATGTTGTGC 238
|| | ||| ||| | || ||| ||||||||||||||| ||||||||||| | || |||||
Sbjct 121 TGAG-TCCGTGT-CTAAGCTACCTATCAAAAGGTGGGGTGGTGCCACCTCCGTGCTGTGC 178
Query 239 AGGAGTCAAAACTTTGAACAGTATGGCTAAAACCACACCAGACCGCCAACAAGCTTGCAG 298
||||||||||| |||||| || ||||| |||||||||| |||||||||||||| ||| |
Sbjct 179 AGGAGTCAAAAAGTTGAACGGTCTGGCTCAAACCACACCGGACCGCCAACAAGCATGCCG 238
Query 299 ATGCATCCAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCT 358
||| | ||| || |||| || || ||| | || ||||||||||||||||||||
Sbjct 239 GTGCTTACAGGCCGCTGCAAA-AGG------GGT-T-AATCCAAGTCTAGCCTCTGGCCT 289
Query 359 TCCTGGAAAGTGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA 418
|||||||||||| ||||||||||| || ||||| ||||||| ||||||||||||| |||
Sbjct 290 TCCTGGAAAGTGTGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACTAACTGCG-CAA 348
Query 419 C-ATCAAGTGAAATGG 433
| |||||||||| |||
Sbjct 349 CCATCAAGTGAAGTGG 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5