BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59350.1 Length=1432 Score E Sequences producing significant alignments: (Bits) Value Ahg496062 jgi|Araly1|496062|fgenesh2_kg.8__1878__AT5G59350.1 1496 0.0 > Ahg496062 jgi|Araly1|496062|fgenesh2_kg.8__1878__AT5G59350.1 Length=1362 Score = 1496 bits (810), Expect = 0.0 Identities = 1093/1217 (90%), Gaps = 69/1217 (6%) Strand=Plus/Plus Query 212 TTCACGCATTTACGTTTTTCTCAATCTTTACATATATGGTAACCAACTCTTATTCCATTC 271 ||||| |||||| ||||||||||||| || ||||||||||||||| ||||||||||||| Sbjct 191 TTCACACATTTAGGTTTTTCTCAATCGTT--ATATATGGTAACCAAGTCTTATTCCATTC 248 Query 272 CTCTGTAACTCACACAAATTCC-TGTCC-AAA-AA-------TTAGTTTTTTCTTTTCAT 321 |||||||| ||||||||||||| || || ||| || || |||||| |||| || Sbjct 249 CTCTGTAATTCACACAAATTCCTTG-CCAAAATAAGGTTTTTTTTTTTTTTTTTTTTAAT 307 Query 322 GTGATGTGAGAATTTGGGTTACGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGGT 381 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | Sbjct 308 GTGATGTGAGAATTTGGGTGAAGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGTT 367 Query 382 TAAGTTTAATGTTTGGGTTTCTTCTATTAGCACTTGTTGGAGAAGTCTACTATCTTCTaa 441 | ||||| | | | |||||||||| |||||||||||| ||||||||| || ||||| | Sbjct 368 TGAGTTT-A-G--T--GTTTCTTCTACTAGCACTTGTTGCAGAAGTCTATTACCTTCTGA 421 Query 442 gatgtaagaagcacaagaagagagtcataagccaagagagtgaagaagagaaagaagaag 501 |||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 422 GATGGAAGAAGCACAAGAAGAGAGTCACAAGCCAAGCGAGTGAAGAAGAGAAAGAAGAAG 481 Query 502 aaCAACAACAAAACGGATACGCTAAAGAACTAATCCAGCTCTTCTGCTTCAAAAAACCTC 561 || ||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 482 AAGAAC--C-AAACGGATACGCTAAAGAACTTATCCAGCTCTTCTGCTTCAAAAAGCCTC 538 Query 562 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAGTCTCAATGAATGAAGATGGGA 621 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 539 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAATCTCAATGAATCAAGATGGGA 598 Query 622 ATCCAGATTTAGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 681 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ATCCAGATTTGGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 658 Query 682 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 718 Query 742 CAGATTTGGAATCTGAAGATGGGGGTAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 801 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 719 CAGATTTGGAATCTGATGATGGTAGCAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 778 Query 802 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCC-- 859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCCAA 838 Query 860 -TA-A--AAAGTCATCATCTCCTCTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 915 || | |||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 839 CTACACTAAAGTC-T--TCTCCTTTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 895 Query 916 TTGAGTCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCCTCTTCTTCACCTCCAC 975 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 896 TTGAATCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCGTCTTCTTCACCTCCAC 955 Query 976 CGAAGTTTAAGTTCAtgagagatgctgaagagaagctaaggaagagattgattgaagaag 1035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 CGAAGTTTAAGTTCATGAGAGATGCTGAAGAGAAGCTAAGGAAGAGATTGATTGAAGAAG 1015 Query 1036 ccaaaagaagagaaC--T---CT-CGATTGTAACAGAAGGTTCGTTTCTCAAGTTTATGA 1089 ||| |||||||||| | || || |||||||| ||||||||||| | ||||| |||| Sbjct 1016 CCAGAAGAAGAGAAGGGTTAGCTTCGGTTGTAACACAAGGTTCGTTTTTGAAGTTCATGA 1075 Query 1090 ATCCTGCGATGAACAGAGAGAAGAAACAGAGTATTCAAGAATGTGATGAAACGGTGTCGT 1149 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1076 ATCCTGCAATGAACAGAGAGAAGAAACAGAGTATTCAAGAATCTGATGAAACGGTGTCGT 1135 Query 1150 TTTCTCCTTCTTCTTCCTCATCAGGTACAACAATTACAAATCTTAGAACGTTAGTGGTTG 1209 |||||||||||||||| |||||||||||||| | |||||||||||||||||||| Sbjct 1136 TTTCTCCTTCTTCTTC---ATCAGGTACAACAA--A----TCTTAGAACGTTAGTGGTTG 1186 Query 1210 TTTAGTATTAGCATCTCTGTGGCTTTACTCttttaatttttatttttggttgaatttttg 1269 |||||| ||||||||||| | |||| | ||||| ||||||| |||| Sbjct 1187 TTTAGTTTTAGCATCTCT-T---TTTA-------A-TTTTT------GGTTGAAATTTT- 1227 Query 1270 tttCCAAAAATTTCAATTATATT-GTGTGAAAATTCTATCTTTCCTTTCTCTCATTCTTG 1328 |||| || |||||||||| |||| ||||||||||||||||||||||||||||| |||||| Sbjct 1228 TTTC-AAGAATTTCAATTTTATTTGTGTGAAAATTCTATCTTTCCTTTCTCTCGTTCTTG 1286 Query 1329 TTATTTAGGAATGATTT-CTTCTGTACGTATCAATCTGAAATTTTTTGCAGATGCTTGTT 1387 || ||| |||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| Sbjct 1287 TTTTTTGGGAATGATTTTCTTCTGTACGTATGAATCTGAAAAATTT-GCAGATGCTTGTT 1345 Query 1388 TTGTTTTCGTCTAAGAA 1404 || ||||||||||||| Sbjct 1346 TTAATTTCGTCTAAGAA 1362 Score = 204 bits (110), Expect = 2e-51 Identities = 168/193 (87%), Gaps = 15/193 (8%) Strand=Plus/Plus Query 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTGTGAAAGAGATCGTTCTTCTC 60 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTTTGAAAGAGA-AGTTCTTTTC 59 Query 61 TCTGTTTCACAT-aaa-agga-a--a-acataagaaaagaaaaaaaaaaa---TCTTTCT 111 |||||||||| | ||| | || | | | | || |||| ||||||||||| ||||||| Sbjct 60 TCTGTTTCACTTAAAATAAGATAGCACAAAAAAAAAAAAAAAAAAAAAAACTGTCTTTCT 119 Query 112 CTTTCACAATCTTAA-TT-TCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGATCCTC- 168 |||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||| Sbjct 120 CTTT--CAATCTTAATTTCTCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGCTCCTCT 177 Query 169 AACAATTTCCATT 181 ||||||||||||| Sbjct 178 AACAATTTCCATT 190 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53554884470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5