BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59400.2
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496067 jgi|Araly1|496067|fgenesh2_kg.8__1883__AT5G59400.1 1574 0.0
> Ahg496067 jgi|Araly1|496067|fgenesh2_kg.8__1883__AT5G59400.1
Length=1077
Score = 1574 bits (852), Expect = 0.0
Identities = 976/1034 (94%), Gaps = 15/1034 (1%)
Strand=Plus/Plus
Query 1 ATTTGTTGCT-GATGGCGGGTACTTGCACTTCGATAAGGCCTCGTCTCATTGGCTCTTCT 59
|||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 9 ATTTGTTG-TCCATGGCGGGTACTTGCACTTCAATTAGGCCTCGTCTCATTGGCTCTTCT 67
Query 60 TCAATTGTTGAGCTTTCAAGGTTGATTAATCGAGCTGGAGTTCCTTTCTCTGTACGATTC 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 68 TCAATTGTTGAGCTTTCCAGGTTGATTAATCGAGCTGGAGTTCCTTTCTCTGTACGAATC 127
Query 120 TCTACAAGAACCAGAGCCCTCCACGGTGGTGGTTTAACCGCACCTACCTCTCGTGAGGAA 179
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCTACCAGAACCAGAGCTCTCCACGGTGGTGGTTTAACCGCACCTACCTCTCGTGAGGAA 187
Query 180 GGTCCTTCTTGTATCTTCGTTGGACCTATTGATTCTGCTCGCAAAGAAACTCTAGAAGCT 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 188 GGTCCTTCTTGTATCTTCGTTGGACCGATTGATTCTGCTCGCAAAGAAACTCTAGAAGCT 247
Query 240 CTTTATCGCCAAGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTTTATCGCCAAGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATG 307
Query 300 TTTGACAGAGTTGAGCTAAAGCTTCGGTGGTATGGTTCAAAATCTGTTGTCAAGTATCCT 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 308 TTTGACAGAGTTGAGCTAAAGCTTCGGTGGTATGGTTCAAAATCTGTCGTCAAGTACCCT 367
Query 360 CGGTGTAGTCTACTAAGACAGTCAACATATGCTGATGCAGAGGATGATGCATCGCAAGTT 419
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 368 CGGTGTAGTCTACTGAGACAGTCAACTTATGCTGATGCAGAGGATGATGCATCACAAGTT 427
Query 420 CTCCTGTTAGCTACCGTATGGAT-TATGATTTTCTTATTTGGTAGTTCGGCATGTGTTTT 478
||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 428 CTCCTGTTAGCTACCATATGGATCT-TGATTTTCTTATTTGGTAGCTCGGCATGTGTTTT 486
Query 479 ACCCACGATATATGGCGTCGGCCTGGTTTATGGAGGAGATCCGTTTGACTCAGGGCTTGT 538
| |||||| |||||| | ||||| |||||||||||||||||| | ||||||||||||||
Sbjct 487 GCTCACGATGTATGGCCTTGGCCTAGTTTATGGAGGAGATCCGGTCGACTCAGGGCTTGT 546
Query 539 CTATAGCAGTCAGTTGTCATCTTCTGTGCCTATTTTGTCAAAGTTTAATGGCATCCTCCT 598
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 547 CTATAGCAGTCAGTTGTCATCTTCTGTGCCTCTTTTGTCAAAGTTTAACGGCATCCTCCT 606
Query 599 CTCCGTGCTAGGGCCTGCTTTTGGATATCCGATTGCATCTTCTGCAGTAAGAGTACTTAA 658
| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 607 CACCGTGCTAGGACCTGCTTTTGGATATCCGATTTCATCTTCTGCAGTAAGAGTACTTAA 666
Query 659 AGGGTTATGGAGAAATGACTTAACGGCTCTAAAAGGAGACTGCCCGAATTGCGGGGAAGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGGTTATGGAGAAATGACTTAACGGCTCTAAAAGGAGACTGCCCGAATTGCGGGGAAGA 726
Query 719 GGTTTTCGCATTTGTGAGATCCGATCAATCGAACCGATCAGCTCACAAAGCCGACTGTCA 778
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 727 GGTTTTCGCGTTTGTGAGATCCGATCAATCAAACCGATCAGCTCACAAAGCCGACTGTCA 786
Query 779 TGTCTGTGAGTGCAC-CTTGGAGTTCCGTACCAAAGTAGAGGTAGATAAATCTGCCTCAC 837
||||||||||||||| || |||||||||||||||||||||| | | | ||| | ||||
Sbjct 787 TGTCTGTGAGTGCACACT-GGAGTTCCGTACCAAAGTAGAG--A-A-A--TCTACATCAC 839
Query 838 GATTGGGGAGAAAATGGGTTTACGGTAGGATATACCTTGTTTCACGGCCAAGGAGAGATC 897
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 GATTGGGTAGAAAATGGGTTTACGGCAGGATATACCTTGTTTCACGGCCAAGGAGAGATC 899
Query 898 GGCGTTCAAAGTTTACATAATTCTAACAAAAGAAGAAAGAtttttttGGGATGGTTTCTA 957
||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 900 GGCGTTCCAAGATTACATAATTCTGACAAAAGAAGAAAGATTTTTTGGGGATGGTGTCTA 959
Query 958 CTCAATTGTGTATTGTAAAAATGATACTATAGAAAGCTTTTGTAACATTCAAAAGATTCA 1017
||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||
Sbjct 960 CTCAATTGTGTATTGTAAAAAGGATACTA--GAAAGCTTTTGTAACATGCAGAAGATTCG 1017
Query 1018 TAAAAATTGTTACT 1031
||||| ||||||||
Sbjct 1018 TAAAA-TTGTTACT 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5