BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59430.1
Length=2162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496070 jgi|Araly1|496070|fgenesh2_kg.8__1886__AT5G59430.4 2826 0.0
Ahg485029 jgi|Araly1|485029|fgenesh2_kg.5__1021__AT3G46590.3 516 3e-145
> Ahg496070 jgi|Araly1|496070|fgenesh2_kg.8__1886__AT5G59430.4
Length=2340
Score = 2826 bits (1530), Expect = 0.0
Identities = 1939/2124 (91%), Gaps = 78/2124 (4%)
Strand=Plus/Plus
Query 69 GGTTGGGAATTACATTCACAGAATTTCGTTGATTGGTGTGATAATAAGCCATTGATCAAC 128
||||| ||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 263 GGTTGCGAATTACCTTCACAGGATTTTGTTGATTGGTGTGATTCTAAGCCATTGATCAAC 322
Query 129 AATC-TTCTTT--TGTGGCAATCACATAATCGTGTTATGCATTCTGAGAAATGGTGTCGC 185
|| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 AAGCTTTTTTTCGTGTGGCAATCACATAATCGTGTTATGCATTCTGAGAAATGGTGTCGC 382
Query 186 ATAAGTGTGTAGAAGAATTTGGATACGCAAGCTACCTGGTACCTTCCAATGCAAGAGCAC 245
||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||
Sbjct 383 ATAAGTGTGTAGAAGAAGTTGGATACAAAAGCTACCTGTTACCTGCCAATGCAAGAGCAC 442
Query 246 CCAGATCCGCCCGGAAGAGGCGCAGTATCGAGAAGAGGATAAGTAAAGAAGATGATAATA 305
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 443 CCAGATCCGCCCGGAAGAGGCGTAGTATCGAGAAGACGATAAGT---GAAGATGATAATA 499
Query 306 TGTGTGCAATTGATCTATTGGCCACCGTAGCTGGACACTTGTCATTTGAGAGTGGGAGTT 365
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 500 TGTGTGCAATTGATTTATTGGCCACCGTAGCTGGACACTTGTCATTTGAGAGCGGGAGTT 559
Query 366 CTCTC-A-TGTCT-ATTG-ACA--AAC-TG-A-TTGA-AGATCATCGTGTAAAGGAGGAA 415
|| || | || |||| | | | | || | || | | | | ||||||||||||||
Sbjct 560 CTATCGACAAACTGATTGAAGATCATCGTGTAGTT-ACACAAAAGAGTGTAAAGGAGGAA 618
Query 416 TTCCCGGAGGAAGAAAAACCTCTAATGCCAGTAGCTTTATCC---------CCTTATCGG 466
|||| |||||||||||||||||||||||| | |||||||||| ||||||| |
Sbjct 619 TTCCTGGAGGAAGAAAAACCTCTAATGCCGGAAGCTTTATCCGGTGAAAATCCTTATCAG 678
Query 467 GGATCTTTGAGTCCCTGCGGATTCAGTTCTGTGATAAATGGCAAAGTAGAGAATGAGGTA 526
||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||| |
Sbjct 679 GGATCTTTGAGCCCCAGCGGTTTTAGTTCTGTGATAAATGGCAAAGTAGAGAATGAGGCA 738
Query 527 GATGGTTTTAGTTACTCTGGTGGTAGTGATGCTTGTCAAGTCGGGAACTTCAGTCAAGAT 586
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 739 GATGGTTTTAGTTACTCTGGTGGTAGTGATGCTTGTCAAGTTGGGAGCTTCAGTCAAGAT 798
Query 587 GTAAAACCGGATATCGATGGTGATGCAGTAGTTCTGGATGCGAGACCTAATGTTGTAGTT 646
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 799 ATAAAACCGGGCATCGATGGCGATGCAGTAGTTCTGGATGCGAGACCTAATGTTGTAGTT 858
Query 647 AGTTTAGGTAGTAGTAGTAGAACCGAAGTGCCATCAATTGGGAACTGTGTTTCCCATGGC 706
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 859 AGTTTAGGTAGTAGTAGTAGAACCGAAGTGCCATCAATTGGGAATTGTGCTTCCCATGGC 918
Query 707 GTTCGGGATGATGTAAATTTGTTTAGTAGAGATGATGATGAAAACTTTTCCAAGTACATT 766
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 919 ATTCGGGATGATGTAAATTTGTTTAGTAGAGATGATGATGAAAACTTTTCTGGGTACATT 978
Query 767 CACCCGCGTGTTACAAAACATTCACCTAGGACTGTACCTCGTATTGGGGACAGAAGAATC 826
|||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 979 CACCCGCGTGTTACAAAAAATTCACCTAGGACTGTGCCGCGTATTGGGGACAGAAGAATC 1038
Query 827 AGGAAGATATTGGCTTCTAGACATTGGAAAGGAGGTTCAAGGCATTCAGATACGAAACCG 886
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1039 AGGAAGATATTGGCTTCTAGACATTGGAAAGGAGGTTCAAGACATGCAGATACGAAACCA 1098
Query 887 TGGAGAAATTATTACTTGCACCAGCAGAGGAGCTATCCTATCAAGAAAAGGAAAAACTTT 946
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1099 TGGAGAAATTATTACTTGCACCATCAGAGGAGCTATCCTATCAAGAAAAGGAAAAACTTT 1158
Query 947 GACCACATATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAGGT 1006
||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||
Sbjct 1159 GACCACATATCTGATTCAATTACTGATGACTACCGTTTGCGCACTAAGATGCATAGAGGC 1218
Query 1007 AGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATGTGAAACTACGGATC 1066
|| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1219 AGCAGAAAAGGTCAAGGTGCATCCTTTGTGGCAAGCAACTCCCATGTGAAACTACGGATC 1278
Query 1067 AAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTCCAGAAACTGCTACTGTTGGCTCA 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTCCAGAAACTGCTACTGTTGGCTCC 1338
Query 1127 TTGAAGAGAATGGTGATGGAAGCAGTGAGCACTTTACTGAGTGATGGACACCGAGTTGGT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TTGAAGAGAATGGTGATGGAAGCAGTGAGCACTTTACTGAGTGATGGACACCGAGTTGGT 1398
Query 1187 CTGATGGTTCAGGGGAAGAAAGTCCGTGACGATAACAAAACCCTTCATCAGACTGGTATC 1246
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1399 CTGATGGTTCATGGGAAGAAAGTCCGTGACGATAACAAAACCCTTCATCAGACTGGGATC 1458
Query 1247 TCTCAGGATAACTCCCACCTGGACTCTCTTGATTTTAGCCTTGAACCCAGCTCAGAAATG 1306
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1459 TCTCAGGATAACACCCACTTGGACTCTCTTGATTTTAGCCTTGAACCCAGCTCAGATATG 1518
Query 1307 CCTCAACTGTTAACTAGTCACCCGTTGGGACATGCTTGTGAGGAGCTGCTACCTGTGTGC 1366
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1519 CCTCAACTGTTAACTAGTCACCCGTCGGGACATGCTTCTGGGGAGCTGCTACCTGTGTGC 1578
Query 1367 CAAGCTACTAAAATAGACAATGTGTTGGAATCTGACCATCATGACTCAGCATTATTCCCA 1426
|||||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1579 CAAGCTGCTAACATGGACAATGTGTTGGAATCTGACCATCATGACTCAGCACTATTCCCA 1638
Query 1427 TCTGACTCATTAGGCAACAATAATGTGACAGAAGATTCTAAAGCTATGATTTCTGTGGCG 1486
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1639 TCTGACTCATTAGGCAAGAATAACGTGACAGAAGATTCTAAAGCTATGATTCCTGTGGCG 1698
Query 1487 CTCAAC-GAATTGTCTTCTCAATCACAACCACCTTCCCGGAAATCT-A-GAAGAAGTGAA 1543
|||| | |||||| |||||| | | || || || | ||| || | || ||||||||
Sbjct 1699 CTCA-CTGAATTGGCTTCTCGA-C-CA-CC---TTGTCTTAAA-CTTAAGA-GAAGTGAA 1749
Query 1544 CAGCAGCAGCAGCAGGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTGCTGAAGTA 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 CAGCAGCAGCAGCAGGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTGCTGAAGTA 1809
Query 1604 GAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGGTGGAGAGATGTTAAGCTT 1663
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1810 GAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGGTGGCGAGATGTTAAGCTT 1869
Query 1664 TGTGCTTTCGAGGATGCTGACCACCGCACTTACGTAGATCTCAAGGATAAATGGAAAACG 1723
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1870 TGTGCTTTCGAGGATGCAGACCACCGCACTTACGTCGATCTCAAGGATAAATGGAAAACG 1929
Query 1724 CTGGTCCACACGGCTAAGATATCTCCACAACAGAGGAGAGGAGAGCCAGTGCCGCAGGAA 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 CTGGTCCACACGGCTAAGATATCTCCACAACAGAGGAGAGGAGAGCCAGTGCCGCAGGAA 1989
Query 1784 CTTCTAAACCGAGTCTTGAACGCCCATGGCTACTGGACGCAGCAACAGATGCAGCAGCTG 1843
|||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||
Sbjct 1990 CTTCTAAACCGAGTCTTGAAAGCTCATGGCTACTGGACACAGCAACAGATGCAGC---TG 2046
Query 1844 CAGCAGAATGTGAACAAGCTGGAGCAGGAGACACAGTCTCAAACGACAGAGGGTCTGTTA 1903
||||| | | | || || | ||||| ||||||||||||||| |||| |
Sbjct 2047 CAGCA-A-------C---C---AG-AG-A--CACAGGCTCAAACGACAGAGGCTCTGCTG 2088
Query 1904 CTTCTCTAAATGAATCTGCTGCAGCCTTGGAGGTCGTCTCTCCTTTGTGTATTACTACTA 1963
||||||||| ||||| |||||||| || |||||||||||||||| |||||||||||||||
Sbjct 2089 CTTCTCTAATTGAATTTGCTGCAGGCT-GGAGGTCGTCTCTCCTATGTGTATTACTACTA 2147
Query 1964 CTATTGATGATTATGTAAGATTCTGACATAGATGCAAAGATTTGGTCTTTTACTT-T--- 2019
| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2148 -T-T-GATGATAATGTAAGATTCTGACATAGATGCAAAGATTTGGTCTTTTACTTGTTTC 2204
Query 2020 --GGTTTGAttt-ttttAACTTTTCTCAATGTAAAGTTTTTAACTGGAATAAGGTTTCTC 2076
||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2205 TTGGTTTC-TTTGTTTTAACTTTTCTCAATGTAAAGTTTTGAACTGGAATAAGGTTTTTC 2263
Query 2077 TGACCAGTTTAGGGCTTTTAGAGGATCTGTTGTACATCTTTTGTGACATTCTCATTCTCT 2136
|||||||||||||||||| ||||||||| |||||||| ||||||||||||||| || |
Sbjct 2264 TGACCAGTTTAGGGCTTT-AGAGGATCTCTTGTACATTTTTTGTGACATTCTC-TT-T-- 2318
Query 2137 TTACATATTTCTTATCTAGACTTT 2160
||||||||||||||||||||||
Sbjct 2319 --ACATATTTCTTATCTAGACTTT 2340
> Ahg485029 jgi|Araly1|485029|fgenesh2_kg.5__1021__AT3G46590.3
Length=2177
Score = 516 bits (279), Expect = 3e-145
Identities = 964/1274 (76%), Gaps = 130/1274 (10%)
Strand=Plus/Plus
Query 632 CCTAATGTTGTAGTTAGTTTAGGTAGTAGTAGTAGAACCGAAGTGC-CATCAAT-TGGGA 689
||| || |||||| |||| ||||||||| ||||| ||||| || | | | || |||||
Sbjct 715 CCTGATATTGTAGCTAGTATAGGTAGTAACAGTAGTACCGAGGT-CGGAGC-ATGTGGGA 772
Query 690 ACTGTGT-TTCCC-ATGGCGT-TCGGGATGATGTAAATTTGTTTAGTAG--A-GATGATG 743
|| | || |||| |||| | |||||||||||||||||| |||||||| | |||||||
Sbjct 773 AC-G-GTAGTCCCAATGG-TTCTCGGGATGATGTAAATTTATTTAGTAGAAATGATGATG 829
Query 744 ATGAAAACTTTTCCAAGTACATTCACCCGCGTGTTACAAAACATTCACCTAGGACTGTAC 803
|||||||||| || |||||||| ||| | | | | | | |||| |||| |
Sbjct 830 ATGAAAACTTCTCTGGGTACATTCGCCCTC--G-T-------A-TGA-ATAGGCCTGTGC 877
Query 804 CTCGTATTGGGGACAGAAGAATCAGGAAGATATTGGCTTCTAGACATTGGAAAGGAGGTT 863
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 878 CTCGAATTGGAGACAGAAGAATCAGGAAGATATTGGCATCTAGACATTGGAAAGGAGATG 937
Query 864 C-AAGGCATTCAG-A-TAC-GAAACCGTGGAGAAATTATTACTTGCA-C--CAGCAGAGG 916
| ||| || | | | | | ||| | |||| |||||||||||| | || ||||||
Sbjct 938 CAAAGCCA-T-GGTATTGCTCAAA--GAGGAG---TTATTACTTGCACCATCATCAGAGG 990
Query 917 AGCTATCCTATCAAGAAAAGGAAAAACTTTGACCA-CATATCTGATTCCGTTA--CTGAT 973
|| ||||| ||||||||||||||| ||||||| || ||| || |||| || | |||||
Sbjct 991 AGTTATCCCATCAAGAAAAGGAAATACTTTGA-CAGCATTTCCGATT-CG-AACTCTGAT 1047
Query 974 GATTACCGTATGC---G-----TAC-T-AA-GATGCA-TA-GAGGTAGT--A-GAAAAGG 1017
||||||||| ||| | || | || || ||| | | | | | ||||| |
Sbjct 1048 GATTACCGTTTGCAAGGAAAAACACGTAAAGGAAGCAGAACAATATCTTCCATGAAAA-G 1106
Query 1018 TC-AAGGGGCATCCTTTGTGGCAAGCGACTC-CCATGTGAAACTACGGATCAAGTCGTTC 1075
|| || || ||||||||| |||| ||| | ||||||| || ||||||||||| |||
Sbjct 1107 TCGAA-ATGCTTCCTTTGTGTCAAGGGAC-CATCATGTGAGGCTGCGGATCAAGTCTTTC 1164
Query 1076 AGGGTGCCTGAGCTTTTCATAGAGATTCCAGAAACTGCTACTGTTGGCTCATTGAAGAGA 1135
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 1165 AGGGTGCCTGAGCTTTTTATAGAGATTCCAGAAACTGCTACTGTTGGCTCCTTGAAGCGG 1224
Query 1136 ATGGTGATGGAAGCAGTGAGC-ACTTTACTGAGTGATGGACACCGAGTTGGTCTGATGGT 1194
||||||||||||||||||| | || ||||| ||||||||| |||||| || ||||||||
Sbjct 1225 ATGGTGATGGAAGCAGTGA-CTACCATACTGGGTGATGGACTCCGAGTCGGGCTGATGGT 1283
Query 1195 TCAGGGGAAGAAAGTCCGTGACGATAACAAAACCCTTCATCAGACTGGTATCTCTCAGGA 1254
||| || ||||||||||| || |||| |||||| |||| ||||||||| || ||| ||||
Sbjct 1284 TCAAGGAAAGAAAGTCCGAGATGATAGCAAAACTCTTCTTCAGACTGGGATTTCTGAGGA 1343
Query 1255 TAACTCCCACCTGGACTCTCTTGATTT-TAGCCTTGAACCCAGCTCAGAAA-TGCC--TC 1310
||| |||| |||| ||||| | ||| | ||||||| ||||||| ||||| | || ||
Sbjct 1344 GAACAACCACTTGGATTCTCTGGGTTTCT-GCCTTGAGCCCAGCTTAGAAACTACCCCTC 1402
Query 1311 AACTG-T-TAA-CTAGTCACCCGTTGG-GACATGCTTGTGAGGAGCTGCTACCTGTGTGC 1366
||| | | | | | ||| | | || | | ||||| ||||| || || || | | |||
Sbjct 1403 AACCGCTGTCATCCAGTTATCTGTCAGAG-CATGCATGTGATGATTTG--ACAT-TATGC 1458
Query 1367 CAAGCTACTAAAATAGACAATGTGTTGGAATCT-GACCATCATGACT-CAGCATTATTCC 1424
|| | || || | | | | || | | ||| | | |||| | | ||||| || ||
Sbjct 1459 CACG--AC-AA--T-GCC--T-TG--G-ATTCTAGTC-ATCA-GCCAGCAGCACCATCCC 1504
Query 1425 CATCTGACTCATTAGGCAACAA-TAATGTGACA--GAAG-ATTCTAAAGCTATGATTTCT 1480
|| |||||||||| || || || || | ||| | | |||||| |||| ||||| ||
Sbjct 1505 CAGCTGACTCATTTGG-AA-AACTAG-GC-ACAACGGATCATTCTAGAGCTTTGATTCCT 1560
Query 1481 GTGGCGCTCAAC-G-AATTGTCTT-CTCAATCACAACCACCTTCCCGGAAATCTAGAAGA 1537
|| | | ||| | | ||| || | ||| || || ||| ||| || | || |||
Sbjct 1561 GTTGTG-TCAGCAGCAAT-GT-TGGCTCC-TCGG--CCTCCTAACCGTAAGTTTAAAAGG 1614
Query 1538 AGTGAACAGCAGC-AGCAGCAGGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTGC 1596
| ||| ||||||| ||| ||| | || || | | | |||||||||||||||||||| |
Sbjct 1615 ACTGAGCAGCAGCTAGCTGCA--CAGCGCA--G-A-A-TTCGTCGACCTTTCTCAGTTAC 1667
Query 1597 TGAAGTAGAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGGTGGAGAGATGT 1656
||||||||||||||| || ||||| |||||| | || || || |||||||||||||| ||
Sbjct 1668 TGAAGTAGAAGCACTGGTCCAAGCCGTTGAGCATCTTGGAACCGGAAGGTGGAGAGACGT 1727
Query 1657 TAAGCTTTGTGCTTTCGAGGATGCTGACCACCGCACTTACGTAGATCTCAAGGATAAATG 1716
|||| || ||||||| ||||| || |||||||| || || || |||||||||||||| ||
Sbjct 1728 TAAGGTTCGTGCTTTTGAGGACGCAGACCACCGTACCTATGTTGATCTCAAGGATAAGTG 1787
Query 1717 GAAAACGCTGGTCCACACGGCTAAG-ATATCTCCACAACAGAGGAGAGGAGAGCCAGTGC 1775
||| ||||| ||||||||||| ||| ||||| ||||| ||| ||||||||||||| ||||
Sbjct 1788 GAAGACGCTAGTCCACACGGC-AAGGATATCGCCACAGCAGCGGAGAGGAGAGCCCGTGC 1846
Query 1776 CGCAGGAACTTCTAAACCGAGT-CTTGAACGCCCATGGCT-ACTGGACGCAGCAAC-AGA 1832
| ||||||||||| |||| || || ||| || || | || ||||| | || || | | |
Sbjct 1847 CACAGGAACTTCTGGACCGTGTTCT-GAAGGCACACG-CTTACTGGTCACAACACCTA-A 1903
Query 1833 TGCAGCAGCTGCAG 1846
|||| || ||||||
Sbjct 1904 TGCATCAACTGCAG 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81360763320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5