BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59480.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496081 jgi|Araly1|496081|fgenesh2_kg.8__1897__AT5G59480.1 1524 0.0
> Ahg496081 jgi|Araly1|496081|fgenesh2_kg.8__1897__AT5G59480.1
Length=1005
Score = 1524 bits (825), Expect = 0.0
Identities = 910/952 (96%), Gaps = 2/952 (0%)
Strand=Plus/Plus
Query 91 TTCTCTTTCGCGAAGTTTCATTGATCAG--AAAGGGTTCCCACTTTCTCCATTGATTATT 148
|||||||||||||||||||||||||| | ||| ||||| |||||||| |||||||||||
Sbjct 54 TTCTCTTTCGCGAAGTTTCATTGATCTGCAAAAAGGTTCTCACTTTCTTCATTGATTATT 113
Query 149 CTTTTGTTCGATTCTTCTCGGTGTGATTTGGTATCAAAATGGCGTATGAGGAACACTTTC 208
||||||||||||||| ||| |||| |||||| ||||||||| ||||||||||| ||||||
Sbjct 114 CTTTTGTTCGATTCTCCTCTGTGTAATTTGGGATCAAAATGTCGTATGAGGAAAACTTTC 173
Query 209 AGCAAACTTCTGAAGCTAAATATGATTGTCTTTTATTTGATATAGATGATACTCTTTACC 268
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 174 AGCAAACTTCTGAAGCCAAATATGATTGTCTTTTATTTGATATAGATGATACTCTGTACC 233
Query 269 CTCTCAGTTCTGGTTTGGCCATGGAAGTGAAAAAGAACATTCAAGAATATATGGTTCAGA 328
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CTCTCAGTTCTGGTTTGGCTATGGAAGTGAAAAAGAACATTCAAGAATATATGGTTCAGA 293
Query 329 AACTTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGCCTTTCCCTTTATAAAATCTATG 388
|||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 294 AACTTGGTGTTGAAGAAGATAAAGTCCAAGAACTGTGCCTTTCGCTTTATAAAATCTATG 353
Query 389 GAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGATTATGACGATTTCCATC 448
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 354 GAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGATTACGACGATTTCCATC 413
Query 449 GTTTTGTTCATGGGAGATTGCCATACTCAACACTGAAGCCTGACCCAATTCTGAGGAATA 508
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 414 GTTTTGTTCATGGGAGATTGCCATACTCAACACTGAAGCCTGACCCAGTTCTGAGGAATA 473
Query 509 TTATTCTTAGCTTGCCTATTCGGAAAGTTGTTTTTACGAATGCAGACAAGGCTCATGCAG 568
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 474 TTATTCTTAGCTTGCCTATTCGGAAAGTTGTTTTCACGAATGCAGACAAGGCTCATGCAG 533
Query 569 CCAAGATTATTGCCAGGCTAGGCCTAGAGGGCTGCTTTGAGAAAATCATATCTTTCGAGA 628
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 CCAAGGTTATTGCCAGGCTAGGCCTAGAGAACTGCTTTGAGAAAATCATATCTTTCGAGA 593
Query 629 CTCTGAACCCCATCACCAAAACTGAATCTCCTGTTGATACCAAAACCAGAGAAATCTTCG 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 594 CTCTGAACCCCATCACCAAAACTGAATCTCCTGTTGATACCAAAACCAGAGAAATCTTTG 653
Query 689 ACATAATCAGTTACATGGCAAATCCTGATTCAAGCATTGAACTTCCAAAGACTTCTGTTG 748
|||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 654 ACATAAGCAGTTACATGGCAAATCCTGACCCAAGCATTGAACTTCCAAAGACTACGGTTG 713
Query 749 TATGCAAACCTTCTGAAGGAGCATTCGAACAGGTTTTCAAGATGGCCAACATCAATCCTA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TATGCAAACCTTCTGAAGGAGCATTCGAACAGGTTTTCAAGATGGCCAACATCAATCCTA 773
Query 809 AGAAGACATTGTTCTTCGATGACAGCATCCGCAACATTCAAACTGGGAAGCGCGTTGGTC 868
| |||||||||||||| |||||||||||||| ||||||||||||||||| || || ||||
Sbjct 774 AAAAGACATTGTTCTTTGATGACAGCATCCGTAACATTCAAACTGGGAAACGTGTGGGTC 833
Query 869 TCCACACCGTATGGGTTGGGACCTCACACAGAGAGGAAGGAGTAGATATTGCATTGGAGC 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TCCACACCGTATGGGTTGGGACCTCACACAGAGAGGAAGGAGTAGATATTGCATTGGAGC 893
Query 929 ATATTCACAACATACGTGAAGCTCTTCCTCAACTATGGGATGCTGTTGATGACAAAGCCA 988
| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 894 ACATTCACAACATACGTGAAGCTCTTCCTGAACTATGGGAAGCTGTTGATGACAAAGCCG 953
Query 989 AGGAGATTAGAACCAGGCAAAAGGTCGCCATTGAAACCATTGCTTAAACAAA 1040
||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 954 AGGAGATTAGATCCAGGCAAAAGGTCGCCATTGAAACCATTGCTTAAGCAAA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5