BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59660.1 Length=2559 Score E Sequences producing significant alignments: (Bits) Value Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459 366 4e-100 Ahg950712 jgi|Araly1|950712|scaffold_802599.1 298 1e-79 Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 87.9 3e-16 > Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459 Length=1185 Score = 366 bits (198), Expect = 4e-100 Identities = 581/755 (77%), Gaps = 69/755 (9%) Strand=Plus/Plus Query 958 AGTAG-AATCAACTGGCAAGGCGATCCATGTGTCCCTCAACATTTTATCTGGGATGGTTT 1016 ||||| ||| | ||||||||| |||||||||||||||| || |||| ||||| || || Sbjct 46 AGTAGAAAT-AGCTGGCAAGGAGATCCATGTGTCCCTCGGCAGTTTAGGTGGGACGGATT 104 Query 1017 AAATTGCAGCAATACGGATATC-TCCACACCACCAAGAATTACTTCTTTAAACTTGTCTT 1075 ||| |||||||| || |||| | | | | |||||||||| ||||||||||||||||||| Sbjct 105 AAACTGCAGCAACACTGATA-CGT-C-TA-CACCAAGAATCACTTCTTTAAACTTGTCTT 160 Query 1076 CAAGTGGTTTAACTGGAAACATAGCTGCTGCCATTCAAAACCTTACGCAACTAGAAAAAC 1135 ||||||||||| |||||| |||||| |||||||||||||| || |||||||||||||| | Sbjct 161 CAAGTGGTTTAGCTGGAACCATAGCAGCTGCCATTCAAAATCTCACGCAACTAGAAAAGC 220 Query 1136 TGGACTTGTCGAATAACAACTTGACTGGAGGGGTGCCGGAGTTTCTAGGCAACATGAAAT 1195 |||||||||| ||||| || |||||||||| |||||| || |||||||||||||| |||| Sbjct 221 TGGACTTGTCCAATAATAATTTGACTGGAGAGGTGCCAGAATTTCTAGGCAACATAAAAT 280 Query 1196 CGTTGTCCTTCAT----T---G--GGAACAATCTTAGTGGTTCAATACCTCAAACTCTTC 1246 | |||| ||||| | | |||||||||||| ||||||||| |||||| |||||| Sbjct 281 CATTGTTGTTCATAAACTTAAGCTGGAACAATCTTAATGGTTCAATTCCTCAATCTCTTC 340 Query 1247 AAAAGAAGAG-ACTAGAACTATTTGTTGAAGGAAACCCAAGGCTCTGTCTCTCTGATTCA 1305 ||||||| || ||| ||| ||||| | |||| ||||| ||||| |||||||||| |||| Sbjct 341 AAAAGAA-AGGACTGGAATTATTTCCTCAAGGGAACCCTAGGCTTTGTCTCTCTGGTTCA 399 Query 1306 TGTAGGAAACCA-CCTAAGAAG-AAA--ATT-C-ATGTGGCAATTGTTGCATCAGTTGCT 1359 || | ||| || || | | ||| ||| | | ||||||||||| |||||||||||| Sbjct 400 TGCCT-A--CCATCC-AA-ACGCAAATTATTTCCA-GTGGCAATTGTCGCATCAGTTGCT 453 Query 1360 TCTGCTG-CCA-T-TG-TCGTTGCTGTATTGATTCTT-TTTCTTATACTCAGAAAGAGAA 1414 || | || ||| | | || ||||||| ||| ||||| ||| || | ||||||||| || Sbjct 454 TCGG-TGGCCAGTATTATCATTGCTGTCTTGGTTCTTATTT-TTGTTTTCAGAAAGAAAA 511 Query 1415 AGTCAACTATTGTACAAGGTCAACACCTGCCACCGAGCACATCAAC-T-G-TAGA-TGTT 1470 || | | | ||| || || ||| | |||||| || | ||| | | | | || |||| Sbjct 512 AGCCGTCAACTGTGGGAGCTCTACAACAGCCACCTAGTATATCGCCATCGGT-GAATGTT 570 Query 1471 ACATTTGCTAATA-A---GAAA-AGCAA---AA--G-----G------TTCACATATTTA 1509 |||| | ||||| | |||| | ||| || | | || || |||| | Sbjct 571 ACATATCCTAATTCACCTGAAACATCAATCCAAACGAATAAGAGGAGGTTTACTTATTCA 630 Query 1510 GAGGTCA-TCAAAATGACAAACAACTTCCAAAGAGTC-TTAGGTAAAGGAGGGTTCGGCA 1567 ||||||| | | | ||||||| |||||||||||||| || || || ||||| ||||| | Sbjct 631 GAGGTCACTGATA-TGACAAAAAACTTCCAAAGAGTTGTTGGGGAA-GGAGGATTCGGTA 688 Query 1568 TGGTGTATCATGGTACTGTAAAGGGTTCTG-ATCAGGTGGCCGTTAAAGTACTCTCTCAA 1626 | || ||||| |||||| | || || || | || || || |||||||||||||||||| Sbjct 689 TTGTCTATCACGGTACTCTGAATGGAAATGCA-CAAGTAGCTGTTAAAGTACTCTCTCAA 747 Query 1627 TCGTCAACTCAAGGGTATAAACAATTCAAAGCAGA 1661 || ||||||||||| || || |||||||| ||||| Sbjct 748 TCATCAACTCAAGGCTACAAGCAATTCAAGGCAGA 782 > Ahg950712 jgi|Araly1|950712|scaffold_802599.1 Length=465 Score = 298 bits (161), Expect = 1e-79 Identities = 185/197 (94%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 499 TACATGAAAGATGTATATGATCGCACATGGGTATCATATGGAGCCAGTTTTCGGACGGGA 558 |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| Sbjct 187 TACATGAAAGATGTCTATGATCGCACATGGGTATCGTATGGAGCCAGTTTTCAGACGGGC 246 Query 559 TGGACCCAGATTTATACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCGAAA 618 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 247 TGGACACAAATTTACACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCAAAA 306 Query 619 GATGCGCTAAGAAATGCTGCCACACCGACTAATGCCAGTGCACCATTGACGATTGAATGG 678 |||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||| Sbjct 307 GATGCGCTAAAAAATGCTGCCATACCGACTAATGCCAGTGCGCCATTGAAGATTGAATGG 366 Query 679 CCTTCAGGAAGTCCCAG 695 ||||||||||||||||| Sbjct 367 CCTTCAGGAAGTCCCAG 383 Score = 231 bits (125), Expect = 1e-59 Identities = 140/147 (95%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 118 GGATTCATCAGTTTGGATTGCGGACT-CCCTGCGAATGAACTGTCTCCTTATGAAGAGAG 176 ||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||| Sbjct 37 GGATTCATCAGTTTGGATTGCGGGCTACCC-GCGAATGAACAGTCTCCTTATGAAGAGAG 95 Query 177 TTTCACTGGACTGCGGTTCTCTTCGGATGAAAAGTTCATACGTAGTGGAAAAAACGGTCG 236 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 96 TTTCACTGGACTGCGGTTCTCTTCAGATGAAAAGTTCGTACGTAGTGGAAAAAACGGTCG 155 Query 237 AATCCGAGAAAATCCTCAGGGATACGC 263 |||||||||||||||| |||||||||| Sbjct 156 AATCCGAGAAAATCCTGAGGGATACGC 182 > Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 Length=3408 Score = 87.9 bits (47), Expect = 3e-16 Identities = 82/98 (84%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 1810 CCGCCAATGGTTCATAGAGATGTCAAAACTGCCAACATATTGCTAGA-TGAGAATTTC-A 1867 |||||||||||||||||||||||||||||| | || ||| | |||| | | |||| | Sbjct 2765 CCGCCAATGGTTCATAGAGATGTCAAAACTACGAATATACTATTAGACT-ATCGTTTCGA 2823 Query 1868 AGGCCAAACTCGCTGATTTTGGTCTCTCAAGATC-TTT 1904 || |||||||||| |||||||| ||||||||||| ||| Sbjct 2824 AG-CCAAACTCGCGGATTTTGGACTCTCAAGATCATTT 2860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96482590585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5