BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59680.1
Length=2664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459 939 0.0
Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 87.9 3e-16
> Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459
Length=1185
Score = 939 bits (508), Expect = 0.0
Identities = 960/1173 (82%), Gaps = 52/1173 (4%)
Strand=Plus/Plus
Query 1115 ACATCCAAGCCACCTATG-AATTGAGTAG-AATCAACTGGCAAAGCGATCCATGCGTCCC 1172
||||| || ||||||||| |||| ||||| ||| | ||||||| | |||||||| |||||
Sbjct 23 ACATCAAAACCACCTATGAAATT-AGTAGAAAT-AGCTGGCAAGGAGATCCATGTGTCCC 80
Query 1173 TCAACAGTTTATGTGGGATGGTTTAAACTGCAGCATCACAGATATAACCACGCCACCAAG 1232
|| ||||||| |||||| || ||||||||||||| ||| | || || | |||||||
Sbjct 81 TCGGCAGTTTAGGTGGGACGGATTAAACTGCAGCAACACTG--AT-ACGTCTACACCAAG 137
Query 1233 AATCACTACTTTAAACTTGTCATCAAGTGGTTTAACTGGAACGATAACAGCTGCCATTCA 1292
||||||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||
Sbjct 138 AATCACTTCTTTAAACTTGTCTTCAAGTGGTTTAGCTGGAACCATAGCAGCTGCCATTCA 197
Query 1293 AAATCTTACGAC-ACTAGAAAAGCTGGACTTGTCGAATAATAACTTGACCGGAGAGGTGC 1351
|||||| ||| | ||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 198 AAATCTCACG-CAACTAGAAAAGCTGGACTTGTCCAATAATAATTTGACTGGAGAGGTGC 256
Query 1352 CAGAATTTCTAAGCAACATGAAATCGCTGTTGGTCATAAACTTAAGCGGGAACGATCTTA 1411
||||||||||| ||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 257 CAGAATTTCTAGGCAACATAAAATCATTGTTGTTCATAAACTTAAGCTGGAACAATCTTA 316
Query 1412 ACGGTACAATTCCTCAATCTCTACAAAGGAAAGGACTTGAGCTACTTT-ATCAAGGAAAC 1470
| ||| |||||||||||||||| |||| ||||||||| || || ||| |||||| |||
Sbjct 317 ATGGTTCAATTCCTCAATCTCTTCAAAAGAAAGGACTGGAATTA-TTTCCTCAAGGGAAC 375
Query 1471 CCCAGGCTTATTTC-CCCTGGTTCA--ACTGA--AACCAAATCTGGCAAGA-GCTTTCCA 1524
|| |||||| | || | |||||||| || | | ||||| | |||| | ||||||
Sbjct 376 CCTAGGCTT-TGTCTCTCTGGTTCATGCCT-ACCATCCAAA-C--GCAA-ATTATTTCCA 429
Query 1525 GTAACAATAGTTGCATCAGTTGGTTCTGCAGCCATTCTTATTGTTG-TG-C-TGGTTCTT 1581
|| |||| || |||||||||| ||| | |||| | |||| ||| || | ||||||||
Sbjct 430 GTGGCAATTGTCGCATCAGTTGCTTCGGTGGCCAGTATTATCATTGCTGTCTTGGTTCTT 489
Query 1582 GTACTTT-TTCTCCGAAAGAAAAAGCCGTCGGCTGTTGAAGTTGTTCTCCCGCGTCCAAG 1640
| ||| || || |||||||||||||||| |||| | || | | | | || || ||
Sbjct 490 AT-TTTTGTTTTCAGAAAGAAAAAGCCGTCAACTGTGGGAGCTCTACAACAGCCACCTAG 548
Query 1641 --TA-GGCCAACGATGAATGTTCCTTATGCTAACTCACCTGAGCCGTCAATCGAGATGAA 1697
|| |||| || |||||||| | ||| |||| |||||||| | |||||| | | |||
Sbjct 549 TATATCGCCATCGGTGAATGTTACATATCCTAATTCACCTGAAACATCAATCCAAACGAA 608
Query 1698 AAAGAGAAAGTTTACTTATTCAGAGGTTAC-GAAAATGACTAATAATTTCGGAAGAGTTG 1756
||||| | |||||||||||||||||| || | | ||||| || || ||| ||||||||
Sbjct 609 TAAGAGGAGGTTTACTTATTCAGAGGTCACTG-ATATGACAAAAAACTTCCAAAGAGTTG 667
Query 1757 TAGGGGAAGGAGGATTTGGCGTTGTCTGCCATGGTACTGTAAATGGTTCTGAACAGGTGG 1816
| |||||||||||||| || |||||| || |||||| | ||||| || ||| || |
Sbjct 668 TTGGGGAAGGAGGATTCGGTATTGTCTATCACGGTACTCTGAATGGAAATGCACAAGTAG 727
Query 1817 CTGTTAAACTACTTTCACAATCATCAACTCAAGGCTATAAAG-AGTTCAAGGC---AG-A 1871
|||||||| |||| || |||||||||||||||||||| ||| | |||||||| || |
Sbjct 728 CTGTTAAAGTACTCTCTCAATCATCAACTCAAGGCTA-CAAGCAATTCAAGGCAGAAGTA 786
Query 1872 -G----------GTTGATCTTCTTCTGAGAGTTCACCATACGAATTTGGTAAGCCTTGTC 1920
| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 787 TGCTTAAAATTTGTTGATCTTCTTCTGAGAGTTCACCATACAAATTTGGTGAGCCTCGTT 846
Query 1921 GGATATTGTGATGAAGGAGACCACTTGGCCCTTATCTACGAGTTTGTACCCAATGGAGAC 1980
|||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| ||
Sbjct 847 GGATATTGTGGCGAAGGAGATCACTTGGCTCTTATCTACGAGTTTGTGCCCAATGGAAAC 906
Query 1981 TTAAGACAACATTTGTCTGGAAAAGGAGGTAAACCCATCGTCAATTGGGGTACTCGGCTA 2040
|||||||||||| |||| |||| | |||| | | ||| | ||| ||||||| ||| |||
Sbjct 907 TTAAGACAACATCTGTCAGGAACACGAGGCATATCCAACATCAGCTGGGGTATTCGACTA 966
Query 2041 AGAATAGCGGCGGAGGCAGCACTAGGTTTGGAGTACTTACACAT-TGGATGCACACCACC 2099
||||||| |||||| |||||||| ||||| || ||||| | |||||||||||||||
Sbjct 967 CGAATAGCTTTGGAGGCTGCACTAGGATTGGAATATTTACA-TTCTGGATGCACACCACC 1025
Query 2100 AATGGTTCATAGAGATGTCAAAACTACAAACATATTGCTGGACGAGCATTATAAGGCCAA 2159
|||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1026 AATGATTCACAGGGATGTCAAAACTACAAACATATTGTTGGACGAGCATTATAAGGCCAA 1085
Query 2160 ACTTGCTGATTTTGGGCTCTCGAGATCTTTCCCTGTTGGAGGTGAATCTCATGTTTCGAC 2219
||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1086 ACTCGCTGATTTTGGGCTCTCAAGGTCTTTCCCAGTTGGAGGTGAATCTCATGTTTCGAC 1145
Query 2220 GGTGATTGCTGGTACTCCTGGTTACCTTGATCC 2252
|||||||||||||||||||||||||||||||||
Sbjct 1146 GGTGATTGCTGGTACTCCTGGTTACCTTGATCC 1178
> Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1
Length=3408
Score = 87.9 bits (47), Expect = 3e-16
Identities = 124/160 (78%), Gaps = 10/160 (6%)
Strand=Plus/Plus
Query 2098 CCAATGGTTCATAGAGATGTCAAAACTACAAACATATTGCTGGACGAGCATTAT--AAGG 2155
||||||||||||||||||||||||||||| || ||| | | ||| | | || | |||
Sbjct 2768 CCAATGGTTCATAGAGATGTCAAAACTACGAATATACTATTAGACTATCGTT-TCGAAG- 2825
Query 2156 CCAAACTTGCTGATTTTGGGCTCTCGAGATC-TTTCCCTGTTGGAGGTGAATCTCATGTT 2214
||||||| || |||||||| ||||| ||||| ||| | ||| |||| |||| |||| ||
Sbjct 2826 CCAAACTCGCGGATTTTGGACTCTCAAGATCATTTTC-TGTCGGAGCTGAAACTCAAGTG 2884
Query 2215 TCGACGGT-GATTGCTGGTACTCCTGGT-TACCTTGATCC 2252
| || || | |||| || ||||| | | || ||||||||
Sbjct 2885 GCAACAGTTG-TTGCAGGAACTCCCG-TATATCTTGATCC 2922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100482066310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5