BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59700.1
Length=2861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496102 jgi|Araly1|496102|fgenesh2_kg.8__1918__AT5G59700.1 3982 0.0
Ahg937338 jgi|Araly1|937338|scaffold_501529.1 1687 0.0
Ahg950891 jgi|Araly1|950891|scaffold_802778.1 209 8e-53
> Ahg496102 jgi|Araly1|496102|fgenesh2_kg.8__1918__AT5G59700.1
Length=2722
Score = 3982 bits (2156), Expect = 0.0
Identities = 2514/2688 (94%), Gaps = 19/2688 (1%)
Strand=Plus/Plus
Query 53 ACAAAAGCCAAAATCTGGAGATCAATCTATCAGCTGATCCTCAACTTTTGTACCTTTCAT 112
||||||||||| ||||||| ||||||| ||||||||||| |||||| |||||||||||||
Sbjct 1 ACAAAAGCCAACATCTGGAAATCAATCGATCAGCTGATCGTCAACTATTGTACCTTTCAT 60
Query 113 GGAACAATTTACTCTTTAAGGTTTTGTGAAGATGGGTGGTGAAAAGTTTGGATTTTTGAT 172
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 61 GGAACAATTTAATCTTTGAGGTTTTGTGAAGATGGGTGGTCAAAAGTTTGGATTTTTAAT 120
Query 173 TTGGATTTTATCGATTCCTTGCTTAATCTTCCTCTGCTATGGATACGTACCAGTGGATAA 232
|||||||| | ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||
Sbjct 121 TTGGATTTCAACGATTTCTTGCTTAATCTGCCTCTGCCATGGATACGTACCTGTGAATAA 180
Query 233 TTACCTCATCAACTGTGGATCATCAACCAACGTCACTGTCACTAGTCGAGTGTTTATCTC 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TTACCTCATCAACTGTGGATCATCAACCAACGTCACTGTCACTAGTCGAGTGTTCATCTC 240
Query 293 TGATAACCTTGCTTCAAACTTTCTAACCTCTCCTAATGAAATCCTCGCCG-C-C-AGTAA 349
|||||| |||||||||||| | |||||||||||||||||||||||||||| | | |||||
Sbjct 241 TGATAAGCTTGCTTCAAACCTCCTAACCTCTCCTAATGAAATCCTCGCCGCCGCGAGTAA 300
Query 350 TCGCAATTCAAATTCAGATATTTACCAGACGGCGAGAATCTTCACCGGAATCTCTAAGTA 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TCGCAATTCAAATTCAGATATTTACCAGACGGCGAGAATCTTCACCGGAATCTCCAAGTA 360
Query 410 CAGATTCTCCGTTGCTAGAGGCCGTCACTGGATTCGTCTCCATTTCAATCCTTTTCAGTA 469
|||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 361 CAGATTCTCCATCACTAGAGGCCGCCACTGGGTTCGTCTCCATTTCAATCCTTTTCAGTA 420
Query 470 CCAAAACTTCCAAATGGTCTCAGCAAAATTCTCTGTTTCTTCAGAAACACATGTTCTTTT 529
||||||||||||| ||| |||||| |||||||| ||||||||| |||||||||| || ||
Sbjct 421 CCAAAACTTCCAATTGGGCTCAGCCAAATTCTCAGTTTCTTCACAAACACATGTCCTCTT 480
Query 530 GAGTGATTTCACTGTGAGTTCCAGAGTTATGAAGGAATACTCTCTGAATGTAGCTACGGA 589
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 GAGTGATTTCACTGTGAATTCCAGAGTTATGAAGGAGTACTCTCTGAATGTAGCTACGGA 540
Query 590 TCATCTGGAGCTCACGTTTACTCCCTCGGGTGATTCATTTGCGTTTCTGAACGCGCTCGA 649
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 541 TCATCTCGAGCTCACGTTTACTCCCTCTGGTGATTCGTTTGCGTTTCTGAACGCGCTCGA 600
Query 650 GGTTGTTTCGGTTCCTGATACGTTGTTCAGTGGTGATCCTTCCTTTGCAGGCAGTCCTGG 709
|||||| |||||||||||||||||| ||| |||||||||||| |||| ||||||||| ||
Sbjct 601 GGTTGTATCGGTTCCTGATACGTTGATCATTGGTGATCCTTCATTTGTAGGCAGTCCCGG 660
Query 710 GAAGTTTCAGGGCTTGTCATGGCAAGCTCTTGAGACGGTTTATAGAGTGAACATGGGCGG 769
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 661 GAAGTTTCAGGGCTTGTCATTGCAAGCTTTTGAGACGGTTTATAGAGTGAACATGGGCGG 720
Query 770 TCCGCGTGTTACGCCTAGTAACGATACTCTTTCGAGAATTTGGGAGCCTGATTCTGAGTT 829
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 TCCGCGTGTTACGCCTAGTAACGATACTCTTTCGAGAATTTGGGAACCTGATTCTGAGTT 780
Query 830 TCTAGTTGAGAAGAATCTAGTTAAGAGTGTGTCTAAGATTGCATCTGTTGATTATGTTCC 889
| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 781 TATAGTGGAGAAGAATCTAGTTAAGATTGTGTCTAAGATTGCAAGTGTTGATTATGTTCC 840
Query 890 TGGTTTTGCTACAGAGGAGACTGCTCCTAGAACTGTCTATGGTACTTGCACCGAGATGAA 949
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 841 CGGTTTTGCTACAGAGGAGACTGCCCCAAGAACTGTCTATGGTACTTGCACCGAGATGAA 900
Query 950 TTCTGCGGATAACCCGTCTAGCAACTTCAATGTGACTTGGGATTTCGATGTTGACCCGGG 1009
||| || ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 TTCCGCAGATTACCCGACTAGCAAGTTCAATGTGACTTGGGATTTCGATGTTGACCCGGG 960
Query 1010 TTTTCAGTACTTTCTACGGTTTCATTTCTGCGATATCGTGAGTAAAGCTCTAAACCAGCT 1069
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 TTTTCAGTACTTTCTACGGTTTCATTTCTGCGATATTGTGAGTAAAGCTCTAAACCAGCT 1020
Query 1070 TTACTTCAATCTTTATGTCGACTCTATGGAT-GTTGTTGAGAATCTTGATCTGAGCTCTT 1128
|||||||||||| |||||||||||||| | | ||||||||| |||| ||||| |||||||
Sbjct 1021 TTACTTCAATCTCTATGTCGACTCTAT-GTTGGTTGTTGAGCATCTCGATCTAAGCTCTT 1079
Query 1129 ATTTATCCAACACTTTGAGTGGTGCATACGCGATGGATTTTGTCACAGGATCAGCAAAAC 1188
| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 1080 ACTTATCCAACACTTTGAGTGGTGCATACTCGATGGATTTTGTCACCGGATCAGCTAAAC 1139
Query 1189 TGACTAAAAGAATCCGTGTGAGCATCGGTCGATCGAGTGTTCACACGGATTACCCTACTG 1248
|||||||| |||||||||||||||||||| |||| |||||||||| |||||||||| ||
Sbjct 1140 AGACTAAAACAATCCGTGTGAGCATCGGTCCATCGGGTGTTCACACTGATTACCCTAATG 1199
Query 1249 CGATTCTGAACGGATTAGAGATCATGAAGATGAATAACTCCAAAAGTCAGCTCAGTATTG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1200 CGATTCTGAACGGATTAGAGATCATGAAGATGAATAACTCCAAAAGTCAGCTCAGTAACG 1259
Query 1309 GAACATTTTTGCCCAGTGGTTCAAGTTCAACCACTAAGAAGAATGTTGGTATGATCATTG 1368
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1260 GGACATTTTTGCCTAGTGGTTCAAGTTCAACCACCAAGAAGAATGTTGGTATGATCGTTG 1319
Query 1369 GTTTAACGATCGGCTCATTGCTTGCTTTAGTGGTTTTAGGAGGTTTCTTTGTGCTGTACA 1428
|| ||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1320 GTGTAACGGTTGGCTCATTGCTTGCTTTAGTGGTTTTAGGAGGTATCTTTTTGCTGTACA 1379
Query 1429 AGAAACGAGGACGAGACCAAGATGGTAATTCAAAGACTTGGATTCCTTTGTCATCCAATG 1488
|||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||
Sbjct 1380 AGAAACGAGGACGAGACCCGGATGACCATTCAAAGACTTGGATTCCGTTGTCTTCCAATG 1439
Query 1489 GAACAACTTCATCCTCAAATGGAACTACACTTGCAAGTATAGCTTCCAATTCCAGTTATC 1548
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1440 GAACAACTTCATCCTCAAATGGAACTACAATTGCAAGTAAAGCTTCCAATTCCAGTTATC 1499
Query 1549 GAATTCCTTTGGTAGCAGTTAAAGAGGCCACAAATAGCTTTGATGAGAATC-GAGCAATT 1607
|||||||||||| |||||| ||||||||||||||||||||||| ||||| | ||||||||
Sbjct 1500 GAATTCCTTTGGCAGCAGTCAAAGAGGCCACAAATAGCTTTGACGAGAA-CAGAGCAATT 1558
Query 1608 GGAGTTGGTGGTTTTGGTAAAGTGTACAAAGGAGAGCTTCACGACGGTACAAAAGTAGCT 1667
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGCGTTGGTGGTTTTGGTAAAGTGTACAAAGGAGAGCTTCACGACGGTACAAAAGTAGCT 1618
Query 1668 GTTAAAAGAGCGAATCCTAAGTCTCAGCAAGGACTTGCAGAGTTCAGGACAGAAATCGAA 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GTTAAAAGAGCGAATCCTAAGTCTCAGCAAGGACTTGCAGAGTTCAGGACAGAAATCGAA 1678
Query 1728 ATGTTGTCACAATTCCGTCATCGCCATTTGGTTTCTTTGATCGGATACTGCGACGAGAAT 1787
||| |||| ||||| ||||| ||||| ||||||||| ||||||| |||||||| ||||||
Sbjct 1679 ATGCTGTCTCAATTTCGTCACCGCCACTTGGTTTCTCTGATCGGTTACTGCGATGAGAAT 1738
Query 1788 AACGAGATGATTCTGGTTTACGAATATATGGAGAATGGAACATTGAAGAGTCACCTTTAC 1847
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1739 AACGAGATGATTCTCATTTACGAATATATGGAGAACGGAACATTGAAGAGTCACCTTTAC 1798
Query 1848 GGTTCAGGTCTTCTTAGCTTGAGTTGGAAGCAACGTCTTGAGATATGCATTGGATCAGCA 1907
|| |||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1799 GGCTCAGATCTTCCTAGCTTAAGTTGGAAGCAACGGCTTGAGATATGCATTGGATCAGCA 1858
Query 1908 AGAGGATTGCATTATCTCCACACCGGTGACGCGAAACCCGTGATTCACAGAGACGTCAAA 1967
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1859 AGAGGATTGCATTATCTCCATACCGGTGACGCGAAACCCGTGATTCACAGAGACGTGAAA 1918
Query 1968 TCCGCCAACATATTGCTTGACGAGAATCTCATGGCTAAAGTTGCAGACTTTGGACTGTCT 2027
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TCCGCCAACATATTACTCGACGAGAATCTCATGGCTAAAGTTGCAGACTTTGGACTGTCT 1978
Query 2028 AAGACCGGACCGGAGATCGATCAGACTCATGTGAGTACCGCGGTCAAAGGAAGTTTCGGA 2087
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 AAGACCGGACCCGAGATCGATCAGACTCATGTGAGTACCGCGGTCAAAGGAAGTTTCGGA 2038
Query 2088 TATCTTGATCCAGAATACTTCAGAAGACAACAGCTCACAGAGAAATCAGATGTTTACTCT 2147
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 TATCTTGATCCGGAATACTTCAGAAGACAACAGCTCACAGAGAAATCAGATGTTTACTCT 2098
Query 2148 TTTGGAGTGGTTATGTTCGAGGTTCTCTGCGCGAGACCTGTTATAGACCCGACACTTACT 2207
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2099 TTTGGAGTGGTTATGTTCGAGGTTCTCTGCGCGAGACCGGTTATAGACCCGACACTTAAT 2158
Query 2208 AGAGAAATGGTGAATCTAGCGGAATGGGCAATGAAATGGCAGAAGAAAGGACAGCTTGAA 2267
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2159 AGAGAGATGGTGAATCTAGCGGAATGGGCGATGAAATGGCAGAAGAAAGGACATCTTGAA 2218
Query 2268 CACATCATCGACCCGTCACTGCGGGGTAAGATCAGACCTGACTCGCTTAGAAAGTTCGGT 2327
|| ||||| || || |||||||| ||||| ||||||||||| ||||| |||||||| |||
Sbjct 2219 CATATCATTGATCCATCACTGCGAGGTAAAATCAGACCTGATTCGCTAAGAAAGTTTGGT 2278
Query 2328 GAAACAGGGGAGAAATGTTTAGCTGACTATGGAGTCGATAGACCATCAATGGGAGATGTG 2387
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2279 GAAACAGGGGAGAAATGTTTAGCTGATTATGGAGTTGATAGACCATCAATGGGAGATGTG 2338
Query 2388 TTGTGGAATCTTGAATACGCTTTGCAGCTACAAGAAGCTGTCGTTGATGGTGATCCAGAA 2447
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2339 TTGTGGAATCTTGAATATGCTTTGCAGCTACAAGAAGCAGTCATTGATGGTGATCCAGAA 2398
Query 2448 GACAGCACAAACATGATCGGTGAGTTACCTCTACGGTTCAATGATTACAACCATGGAGAC 2507
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2399 GACAGCACAAACATGATCGGTGAGCTACCTCTACGGTTCAATGATTTTAACCATGGAGAC 2458
Query 2508 ACGAGTGTTAACTTTTCTGTAGCTAAAGAGGGACGGTTTGATGAAGAAGAATCGAGTGTT 2567
||||| |||||| |||||||||||||||||| | | ||||| | |||||||||
Sbjct 2459 ACGAGCGTTAACGTTTCTGTAGCTAAAGAGG-A-------A-GAAGA-G--TCGAGTGTT 2506
Query 2568 GATGATAGTTCAGGTGTTTCCATGAGTAAAGTTTTCTCGCAGCTGATCAAATCTGAGGGA 2627
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2507 GATGATAGTTCAGGTGTTTCCATGAGTAAAGTTTTCTCGCAGCTGGTTAAATCTGAGGGA 2566
Query 2628 CGTTAAAGCGATGATAAATTGGAACCAGAATATAGAATCTTTGTTCTGCTCTAGCTTTTC 2687
|| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 2567 CGCTAAAGAGATGATAAATTGGAACCAGAATATAGCATATTTGTTCTCCTCTAGCTTTTC 2626
Query 2688 TTCTGTACATTTTTTACGATTAGACTATGATTTTCATTCAATAACCAA 2735
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2627 TTCTGTACATTTTTAACGATTAGACTATGATTTTCATTCAATGACCAA 2674
> Ahg937338 jgi|Araly1|937338|scaffold_501529.1
Length=2530
Score = 1687 bits (913), Expect = 0.0
Identities = 1964/2461 (80%), Gaps = 113/2461 (5%)
Strand=Plus/Plus
Query 228 GATAATTACCTCATCAACTGTGGATCATCAACCAACGTCACTGTCACT-AGTCGAGTGTT 286
||||||||| | ||||||||||||||| ||| ||| | || | | | ||||| | ||
Sbjct 96 GATAATTACTTAATCAACTGTGGATCACCAAGCAATGGAACACT-AATGGGTCGAATCTT 154
Query 287 TATCTCTGATAACCT-TGCTTCAAACTTTCTAACCTCTCCTAATGAAATCCTCGC-CGCC 344
||| |||||||| || | |||| ||||| || || ||||| || || || ||||| | |
Sbjct 155 TATGTCTGATAAGCTCT-CTTCGAACTTACTTACTTCTCCCAAAGAGATTCTCGCAAG-C 212
Query 345 AGTAATCG-CAATTCAA--AT---TCAGATATTTACCAGACGGCGAGAATCTTCACCGGA 398
| || || || | || | ||||| |||||||| ||||||||| |||||||| ||
Sbjct 213 -GAAAGCGTTAA-T-AACGCTGGCTCAGACATTTACCAAACGGCGAGAGTCTTCACC-GA 268
Query 399 A-TCTCTAAG-TACAGATTCTCCGTTGCTAGAGGCCGTCACTGGATTCGTCTCCATTTCA 456
| ||||| || |||| |||||| | || | || ||||| ||| |||||||| ||||||
Sbjct 269 AGTCTCT-AGCTACAAATTCTCTATCACTCGTGGTCGTCATTGGGTTCGTCTCTATTTCA 327
Query 457 ATCCTTTTCAGTACCAAAACTTCCAAAT-GGTCTCAGCAAAATTCTCTGTTTCTTCAGAA 515
|||||||| | |||||||||||| |||| ||| ||||| |||||| | ||||| ||| ||
Sbjct 328 ATCCTTTTGACTACCAAAACTTCAAAATGGGT-TCAGCTAAATTCGCAGTTTCGTCACAA 386
Query 516 ACACATGTTCTTTTGAGTGATTTCACTG-T--GAGTTCCAGAGTTATGAAGGAATACTCT 572
| ||||| |||||||||||||||| || | |||| | |||||| | || || ||||||
Sbjct 387 AGTCATGTCCTTTTGAGTGATTTCAATGTTAAGAGTACGAGAGTTGTTAAAGAGTACTCT 446
Query 573 CTGAATGTAG-CTACGGATCATCTGGAGCTCACGTTTACTCCCTCGGGTGATTCATTTGC 631
||||||| | |||| || || | | ||||||||||||||||||||||| ||| |||||
Sbjct 447 TTGAATGT-GACTACCAATGATTTAGTGCTCACGTTTACTCCCTCGGGTGGTTCGTTTGC 505
Query 632 GTTTCTGAACGCGCTCGAGGTTGTTTCGGTTCCTGATACGTTGTTCAGTGGTGA-TCCTT 690
|||| |||||||| |||||||| | ||| |||| ||||| ||| ||| |||| | |||
Sbjct 506 GTTTGTGAACGCGATCGAGGTTATATCGATTCCGGATACATTGATCACTGGT-AGTCCAA 564
Query 691 CCTTTGCAGGCAGTCCTGGGAAGTTTCAGGGCT-TGTC-ATGGCAAGCTCTTGAGACGGT 748
||| ||||| |||| | |||||| || | |||| || ||| | |||||| || |
Sbjct 565 GGTTTATAGGCAACCCTGTGCAGTTTC-CGGATATGTCAAT-GCAGGGTCTTGAAACCAT 622
Query 749 TTATAGAGTGAACATGGGCGGTCCGCGTGTTACGCCTAGTAACGATACTCTTTCGAGAAT 808
| |||||||||||||||||||||| | |||| || ||| |||||||||||| ||||||
Sbjct 623 TCATAGAGTGAACATGGGCGGTCCACTTGTTGCGGCTAACAACGATACTCTTACGAGAAC 682
Query 809 TTGGGAGCCTGATTCTGAGTTTCTAG-TTGAGAAGAATCTAGTTAAGAGTGTGTCTAAGA 867
||||| ||||||||| | |||||| | ||||||||||| ||| ||||| ||||||||||
Sbjct 683 TTGGGTGCCTGATTCGGGGTTTCT-GCTTGAGAAGAATTTAGCTAAGACTGTGTCTAAGT 741
Query 868 TTGCATCTGTTGA-TTATGTTCCTGGTTTTGCTACAGAGGAGACTGCTCCTAGAACTGTC 926
|| || ||||| | || |||||| |||| ||| |||||||| |||| || ||||| ||
Sbjct 742 TTTCAACTGTTAACTT-TGTTCCAGGTTATGCAACAGAGGACTCTGCGCCAAGAACCGTA 800
Query 927 TATGGTACTTGCACCGAGATGAATTCTGCGGATAACCCGTCTAGCAACTTCAATGTGACT 986
||||||| ||| || ||||||||||| |||||||||||| ||||| |||||||| |||
Sbjct 801 TATGGTAGTTGTACTGAGATGAATTCCGCGGATAACCCGAATAGCATTTTCAATGTCACT 860
Query 987 TGGGATTTCGATGTTGACCCGGGTTTTCAGTACT-TTCTACGGTTTCATTTCTGCGATAT 1045
||||| ||||||||||| |||||||||||||||| || | || || || |||||||||||
Sbjct 861 TGGGAGTTCGATGTTGAGCCGGGTTTTCAGTACTATT-TCCGCTTCCACTTCTGCGATAT 919
Query 1046 CGTGAGTAAAG-CTCTAAACCAGCTTTACTTCAATCTTTATGTCGACTCTATGGAT-GTT 1103
|| || | || |||||||||| || |||||||||||||| ||||| |||| | | |
Sbjct 920 TGTTAG-CTTGTCTTTAAACCAGCTATATTTCAATCTTTATGTTGACTCGATGG-TCGCT 977
Query 1104 GTTGA-GAATCTTGATCTGAG--CTCTTATTTATCCAACACTTTGAG-TGGTGCATACGC 1159
| | | | || ||||||| || ||||| | || ||||||||| | |||||||||| |
Sbjct 978 GCT-ACGGATATTGATCTTAGCACTCTTGTGGAT--AACACTTTG-GCTGGTGCATACTC 1033
Query 1160 GATGGATTTTGTCA--CAGGATCAGCAAAACTG-ACTAA-AAGAATCCGTGTGAGCATCG 1215
|||||| ||||||| || || | | ||| | | ||| || ||||||||||||||| |
Sbjct 1034 GATGGACTTTGTCACGCA-GA-C-TCCAAAGGGTAGTAATAA-AATCCGTGTGAGCATTG 1089
Query 1216 GT-CGATCGAGTGTTCACACGGATTA-CCCTACTGCGATTCTGAACGGATTAGAGATCAT 1273
|| || |||| ||||||||| ||||| || || |||||| |||||||||| ||||||||
Sbjct 1090 GTCCG-TCGACTGTTCACACCGATTATCCAAAC-GCGATTGTGAACGGATTGGAGATCAT 1147
Query 1274 GAAGATGAATAACTCCAAAAGTCAGCTCAGTATTGGAACATTTTTGCCCAGTGGTTCAAG 1333
||||||||||||||| || ||||||| || | || ||||| || || |||| ||
Sbjct 1148 GAAGATGAATAACTCTAAGGGTCAGCTAAGCACCGGGTCATTTGTG-CC--TGGTAGTAG 1204
Query 1334 TTCAACCACTAAG-A-AG-AATGTTGGTATGATCATTGGTTTAACGATCGGCTCATTGCT 1390
||||| || |||| | || ||| | || ||||| | |||| | | || || || |||||
Sbjct 1205 TTCAAGCAGTAAGCAGAGTAATATCGGGATGATTGTAGGTTCAGCCATTGGTTCGTTGCT 1264
Query 1391 TGC-TTTAGTGGTT-TTAGGAGGTTTCTTTGTGCTGTACAAGAAAC-GAGGACGAGACCA 1447
|| || || || || ||| ||| ||||||| |||| ||||| | || ||| | |||
Sbjct 1265 CGCGGTT-GT-CTTCTTGGGAAGTTGCTTTGTGTTGTATAAGAAGCGGA-AACGTGGCCA 1321
Query 1448 AGATGGTAATTCAAAGACTTGGATTCC-TTTGTC-ATCCAATGGAACAAC--T-----TC 1498
||||||| |||||||||||||||| || ||| || || || ||||| | | |
Sbjct 1322 AGATGGTCATTCAAAGACTTGGATGCCGTTT-TCAAT-AAACGGAACTTCGATGGGAAGC 1379
Query 1499 --ATCCTCAAATGGAACTACACTTGCAAGTATAGCTTCCAATTCCAGTTATCGAATT-CC 1555
|| ||| || |||||||| ||| |||||||| || ||||| ||| ||| || ||| ||
Sbjct 1380 AAATACTCCAACGGAACTACGCTTACAAGTATAACTACCAATGCCAATTACCGTATTCCC 1439
Query 1556 TTTGGTAGCAGTTAAAGAGGCCACAAATAGCTTTGATGAGAATCG-AGCAATTGGAGTTG 1614
|||| | || |||||||| || ||||||| |||||| |||| ||| | | || || || |
Sbjct 1440 TTTGCT-GCGGTTAAAGACGCTACAAATAACTTTGACGAGAGTCGCAAC-ATCGGGGTGG 1497
Query 1615 GTGGTTTTGGTAAAGTGTACAAAGGAGAGCTTCACGACGGTACAAAAGTAGCTGTTAAAA 1674
| |||||||||||||| ||||||||||||||| | ||||||||||| |||||||| ||||
Sbjct 1498 GCGGTTTTGGTAAAGTCTACAAAGGAGAGCTTAATGACGGTACAAAGGTAGCTGTGAAAA 1557
Query 1675 GAGCG-AATCCTAAGTCTCAGCAAGGACTTGCAGAGTTCAGGACAGAAATCGAAATGTTG 1733
||| | || || || ||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct 1558 GAG-GAAACCCAAAATCTCAGCAAGGGCTTGCGGAATTCAGGACAGAAATCGAGATGTTA 1616
Query 1734 TCACAATTCCGTCATCGCCATTTGGTTTCTTTGATCGGATACTGCGACGAGAATAACGAG 1793
|| || || ||||| || |||||||| ||| ||||||| || || |||||||| || |||
Sbjct 1617 TCTCAGTTTCGTCACCGACATTTGGTCTCTCTGATCGGTTATTGTGACGAGAACAATGAG 1676
Query 1794 ATGATTCTGGTTTACGAATATATGGAGAATGGAACATTGAAGAGTCACCTTTACGGTTCA 1853
||||| ||| ||||||| ||||||||||||||||| | |||||||| ||||| || |||
Sbjct 1677 ATGATACTGATTTACGAGTATATGGAGAATGGAACGGTAAAGAGTCATCTTTATGGCTCA 1736
Query 1854 GGTCTTCTTAGCTTGAGTTGGAAGCAACGTCTTGAGATATGCATTGGATCAGCAAGAGGA 1913
||||||| |||||||| |||||| ||||| |||||||| |||||||| | || ||||||
Sbjct 1737 GGTCTTCCTAGCTTGACTTGGAAACAACGGCTTGAGATCTGCATTGGCGCGGCTAGAGGA 1796
Query 1914 TTGCATTATCTCCACACCGGTGACGCGAAACCCGTGATTCACAGAGACGTCAAATCCGCC 1973
|||||||| || ||||| |||||| ||||||| || |||||||||||||| ||||| ||
Sbjct 1797 TTGCATTACCTTCACACGGGTGACTCGAAACCGGTCATTCACAGAGACGTGAAATCTGCA 1856
Query 1974 AACATATTGCTTGACGAGAATC-TCATGGCTAAAGTTGCAGACTTTGGACTGTCTAAGAC 2032
|||||||| || |||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 1857 AACATATTACTCGACGAGAA-CTTCATGGCTAAAGTTGCAGACTTTGGACTGTCCAAGAC 1915
Query 2033 CGGACCGGAGATCGATCAGACTCATGTGAGTACCGCGGTCAAAGGAAGTTTCGGATATCT 2092
||||| ||| | ||||| |||||||||||||| || |||||||||||||| ||||||||
Sbjct 1916 TGGACCCGAGCTTGATCAAACTCATGTGAGTACTGCTGTCAAAGGAAGTTTTGGATATCT 1975
Query 2093 TGATCCAGAATACTTCAGAAGACAACAGCTCACAGAGAAATCAGATGTTTACTCTTTTGG 2152
||| || || ||||||||||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct 1976 TGACCCCGAGTACTTCAGAAGGCAACAGCTCACTGAGAAATCCGATGTTTACTCCTTCGG 2035
Query 2153 AGTGGTTATGTTCGAGGTTCTCTGCGCGAGACCTGTTATAGACCCGACACTTACTAGAGA 2212
|| ||| | || ||||||||||| || ||||||||||||||||| |||||| | |||||
Sbjct 2036 GGTTGTTCTTTTTGAGGTTCTCTGTGCTAGACCTGTTATAGACCCAACACTTCCAAGAGA 2095
Query 2213 AATGGTGAATCTAGCGGAATGGGCAATGAAATGGCAGAAGAAAGGACAGCTTGAACACAT 2272
|||||||||||| || |||||||| ||||||||||||||||||||||| || || || ||
Sbjct 2096 AATGGTGAATCTTGCAGAATGGGCTATGAAATGGCAGAAGAAAGGACAACTAGATCAGAT 2155
Query 2273 CATCGACCCGTCACTGCGGGGTAAGATCAGACCTGACTCGCTT-A-GAAAGTTCGGTGAA 2330
|||||| | ||| || || || || |||||||| || || || | |||| || | |||
Sbjct 2156 CATCGATCAGTCGCTTCGCGGAAATATCAGACCCGATTC-TTTAAGGAAA-TTTGCAGAA 2213
Query 2331 ACAGGGGAGAAATGTTTAGCTGACTATGGAGTCGATAGACCATCAATGGGAGATGTGTTG 2390
||||| ||||||||||| || || || ||||| ||||| ||||| |||||||||||||||
Sbjct 2214 ACAGGTGAGAAATGTTTGGCGGATTACGGAGTTGATAGGCCATCTATGGGAGATGTGTTG 2273
Query 2391 TGGAATCTTGAATACGCTTTGCAGCTACAAGAAGCTGTCGTTGATGGTGATCCAGAAGA- 2449
|||||||||||||||||| |||||||||||||||| ||||| ||||| || ||||||||
Sbjct 2274 TGGAATCTTGAATACGCTCTGCAGCTACAAGAAGCAGTCGTCGATGGCGAACCAGAAGAT 2333
Query 2450 --CAGCACAAACATGATCGGTGAGTTACCTCTACGGTTCAATGATTACAACCATGGAGAC 2507
|||||| || ||||||||||| ||||||| || | |||| ||| || || ||||||
Sbjct 2334 AACAGCACGAATATGATCGGTGAATTACCTCCACAGATCAACAATTTCAGTCAGGGAGAC 2393
Query 2508 ACGAGTGTTAACTTTTCTGTAGCTAAAGAGGGACGGTTTGATGAAGAAGAATCGAGTGTT 2567
|| ||||||||| || | | || | || ||| | ||| || | ||| ||||| ||
Sbjct 2394 ACAAGTGTTAACGTTCCAG--GC-ACAGCGGGGCAGTTCGA--A-GAA---TCGAGCATT 2444
Query 2568 GATGATAGT-TCAGGTGTTTCCATGAGTAAAGTTTTCTCGCAGCTGATCAAATCTGAGGG 2626
|||||| | || || ||||||||||||||||| ||||| || ||| | |||||||||||
Sbjct 2445 GATGATC-TCTCTGGCGTTTCCATGAGTAAAGTATTCTCACAACTGGTGAAATCTGAGGG 2503
Query 2627 A 2627
|
Sbjct 2504 A 2504
> Ahg950891 jgi|Araly1|950891|scaffold_802778.1
Length=2570
Score = 209 bits (113), Expect = 8e-53
Identities = 434/582 (75%), Gaps = 50/582 (9%)
Strand=Plus/Plus
Query 1872 TGGAAGCAACGTCTTGAGATATGCATTGGATCAGCAAGAGGATTGCATTATCTCCACACC 1931
|||||||||||||| ||||| |||||||||||||| | ||| | || |||||||||||
Sbjct 1897 TGGAAGCAACGTCTAGAGATCTGCATTGGATCAGCGCGTGGACTCCACTATCTCCACACG 1956
Query 1932 GGTGAC-GCGA-AACCCGTGATTCACAGAGACGTCAA-ATCCGCCAACATAT-TGCTT-G 1986
|||| | || | || | || ||| | ||||| || | || | ||||| | | ||| |
Sbjct 1957 GGTG-CAGC-ACAAGGAATCATCCACCGCGACGTTAAGA-CCACTAACAT-TCT-CTTGG 2011
Query 1987 ACGAGAATCTCA-TGGCTAAAGTTGCAGACTTTGGACTGTCTAAGACCGGACCGGAGATC 2045
||||||| || | | ||||||||| | || |||||||| || || | | || ||
Sbjct 2012 ACGAGAACCT-AGTCGCTAAAGTTTCTGATTTTGGACTTTC-AAAAGATG-CC-CCTATG 2067
Query 2046 GATC-AGACTCATGTGAGTACCGCGGTCAAAGGAAGTTTCGGATATCTT-GATCCAGAAT 2103
|| | || ||||| ||||| ||||| ||||| |||||||| ||| || || || || |
Sbjct 2068 GAACAAG-GGCATGTAAGTACGGCGGTGAAAGGTAGTTTCGGGTAT-TTAGACCCCGAGT 2125
Query 2104 ACTTCAGAAGACAACAGCTCACAGAGAAATCAGATGTTTACTCTTTTGGAGTGGT-TATG 2162
||||| | |||||||| ||||| || ||||| ||||||||||| || || ||||| | |
Sbjct 2126 ACTTCCGCAGACAACAACTCACTGATAAATCTGATGTTTACTCGTTCGGTGTGGTGT-TA 2184
Query 2163 TTCGAGGTTCTCTGCGCGAGACCTGTTATAGACCCGACACTTA-CTAGAGAA-ATGGTGA 2220
||||||||||| |||||||| || || ||| |||| ||| ||| |||||||| | || |
Sbjct 2185 TTCGAGGTTCTTTGCGCGAGGCCAGTGATAAACCC-ACAGTTACCTAGAGAACA-AGTTA 2242
Query 2221 ATC-TAGCGGAATGGGCAATGAAATGGCAGAAG-AAAGGACA-GCTT-GA-ACACATCAT 2275
| | |||| |||| || ||||| | ||| || ||||| | | || || | | |||||
Sbjct 2243 A-CTTAGCAGAATATGCTATGAATTTGCA-TAGAAAAGG-TATG-TTGGAGA-AAATCAT 2297
Query 2276 CGA-CCCGTCACTGCG-GGGTAA-GATCAG-ACCTGACTCGCTT-AGAAAGTTCGGT-GA 2329
||| ||| | | || ||| || || || | | ||| || ||||| ||| || ||
Sbjct 2298 CGATCCC-AAAAT-CGTGGG-AACAATTAGTA-AAGGGTCG-TTAAGAAAATTC-GTGGA 2351
Query 2330 AACAGGGGAGAAATGTTTAGCTGACTATGGAGTCGATAGACCAT-CAATGGGAGATGTGT 2388
| | ||||||||||| ||||| || || || ||| | || | ||||||||||||||
Sbjct 2352 GGCTGCAGAGAAATGTTTGGCTGAGTACGGTGTTGATCGGCC-TGGAATGGGAGATGTGT 2410
Query 2389 TGTGGAATCTTGAATACGCTTTGCAGCTACAAGAAGCTGTCG 2430
|||||||||||||||| |||||||| || |||||||| ||||
Sbjct 2411 TGTGGAATCTTGAATATGCTTTGCAACTTCAAGAAGC-GTCG 2451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107985844575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5