BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59740.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332244 jgi|Araly1|332244|fgenesh1_pm.C_scaffold_8001587 1712 0.0
Ahg937311 jgi|Araly1|937311|scaffold_501502.1 1064 0.0
> Ahg332244 jgi|Araly1|332244|fgenesh1_pm.C_scaffold_8001587
Length=1035
Score = 1712 bits (927), Expect = 0.0
Identities = 1000/1036 (97%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 202 ATGGCTGAGCCAGAATTAGTAAACGGAGGAGTGAAAGAGAACAAATTATGGAAAGGTGTA 261
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTGAGCCGGAAACAGTAAACGGAGGAGTGAAAGAGAACAAATTATGGAAAGGAGTA 60
Query 262 TTCGCAGTTTCCGGCATTATGTCTACTCTTGTAATCTACGGTGTTCTTCAGGAGAAGATA 321
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTCGCAGTTTCCGGCATTATGTCTACTCTTGTAATCTATGGTGTTCTTCAGGAGAAGATA 120
Query 322 ATGAGAGTTCCTTATGGAGTGAACAAGGAGTT-TTTTAAGCACTCTTTGTTTCTTGTTTT 380
|||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||
Sbjct 121 ATGAGAGTTCCTTATGGAGTGAACAAAGA-TTATTTTAAACACTCTTTGTTTCTTGTTTT 179
Query 381 CTGCAATCGGCTTACTACATCAGCTGTCTCTGCTGGTGCTTTACTGGCAAGCAAGAAAGT 440
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CTGCAATCGGCTCACTACATCAGCTGTCTCTGCTGGTGCTTTATTGGCAAGCAAGAAAGT 239
Query 441 TTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCTTAAC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCTTAAC 299
Query 501 TACAACATGTCAATATGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTGCAAA 560
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CACAACATGCCAATACGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTGCAAA 359
Query 561 GTGTGCCAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAGTATAA 620
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGTGCTAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAGTATAA 419
Query 621 GGGCTTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATTCTCTT 680
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GGGATTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATTCTTTT 479
Query 681 TCCGGCAGGAGATGATGTTAGTCCATACAATAAGGGAAGGGAAAATACTGTTTGGGGTGT 740
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TCCGGCAGGAGATGATGTTAGTCCGTACAATAAGGGAAGGGAAAATACTGTTTGGGGTGT 539
Query 741 TTCCCTTATGGCTGGTTATCTTGGGTTTGACGGCTTTACAAGTACATTCCAAGACAAGCT 800
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 540 TTCCCTTATGGCTGGTTATCTGGGGTTTGACGGCTTTACAAGCACATTCCAAGACAAGCT 599
Query 801 CTTTAAAGGATATAACATGGAGATACATAACCAAATATTCTACACAACACTTTGTTCTTG 860
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTAAAGGATATAATATGGAGATACATAACCAAATATTCTACACAACACTTTGTTCTTG 659
Query 861 TGTTTTGAGTTTCACTGGACTTATATTGCAAGGGCATCTACTACCAGCTGTAGATTTTGT 920
||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 660 TGTTTTGAGTTTCACAGGACTTATATTGCAAGGGCATTTACTACCAGCTATAGATTTTGT 719
Query 921 TTCTCTGCATAGGGATTGTTTACTCGACATCGCTCTGCTTTCCACAGTTGCAACAGCGAG 980
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 720 TTCTCTGCATAGGGATTGTTTACTCGACATCGCTCTGCTTTCTACGGTTGCAACAGCAAG 779
Query 981 CCAGTTCTTCATTTCTTACACAATTAGGACATTTGGTGCTCTAACATTTGCTGCAATCAT 1040
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCAGTTCTTCATTTCGTACACAATTAGGACATTTGGTGCTCTAACATTTGCTGCAATCAT 839
Query 1041 GACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCATCCTCTTAG 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCATCCTCTTAG 899
Query 1101 CTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGGTCTTTATATGCGAAAAACTTACT 1160
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 900 CTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGATCTTTATACGCGAAAAACTTACT 959
Query 1161 GAACAACAAGAAAAATTCACAAACGCAACCACCACCTCCAGAACTTCCGCAGTACGAAAA 1220
||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 960 GAACAACAAGAAAAAATCACAAACGCAACCATCGCCTCCAGAACTTCCGCAGTACGAAAA 1019
Query 1221 GGTTGAGAGCTCTTAA 1236
|| |||| ||||||||
Sbjct 1020 GGCTGAGGGCTCTTAA 1035
> Ahg937311 jgi|Araly1|937311|scaffold_501502.1
Length=1084
Score = 1064 bits (576), Expect = 0.0
Identities = 845/974 (87%), Gaps = 21/974 (2%)
Strand=Plus/Plus
Query 202 ATGGCTGAGCCAGAATT-AGTAAACGGAG--GAGTGA-AAG-AGAACAAATTATGGAAAG 256
||||||||||||| ||| ||||||| || || || ||| |||| || |||||||||
Sbjct 21 ATGGCTGAGCCAG-ATTCTGTAAACGAAGCCAAG-GAGAAGAAGAAGAAGCTATGGAAAG 78
Query 257 GTGTATTCGC-AGTTTCCGGCATTATG-TCTACTCTTGTAATCTACGGTGTTCTTCAGGA 314
||| ||||| | | || || || ||| | |||||| || ||||||||| ||||||||||
Sbjct 79 CTGTTTTCGCTA-TCTCTGGGATCATGAT-TACTCTCGTCATCTACGGTCTTCTTCAGGA 136
Query 315 GAAGATAATGAGAGTTCCTTATGGAGTGAACAAGGAGTTTTTTAAGCACTCTTTGTTTCT 374
|||||| |||||||| ||||||||| |||| || |||| ||||||||||||||||||||
Sbjct 137 GAAGATTATGAGAGTGCCTTATGGATTGAAAAAAGAGTACTTTAAGCACTCTTTGTTTCT 196
Query 375 TGTTTTCTGCAATCGGCTTACTACATCAGCTGTCTCTGCTGGTGCTTTACTGGCAAGCAA 434
||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 197 TGTTTTCTGTAATCGTCTTACTACATCAGCTGTTTCTGCTGCTGCTTTACTGGGAAGCAA 256
Query 435 GAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACAT 494
||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 257 GAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTCATATCAGTAACTAACAT 316
Query 495 CTTAACTACAACATGTCAATATGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCT 554
|||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||| |
Sbjct 317 CTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTTTCCCAGTCCAAACG-T 375
Query 555 TG-C-AAAGTGTGCCAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAG 612
|| | ||| ||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 376 TGGCTAAA-TGTGCCAAAATGATACCTGTAATGGTTTGGGGAACTCTCATCATGCAGAA- 433
Query 613 AAG-TATAAGGGCTTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTT 671
||| |||| ||| ||||| ||||||||||| ||||| ||||| |||||||||||||| ||
Sbjct 434 AAGGTATAGGGGGTTTGATTATTTAGTGGCGTTTCTCGTGACTCTTGGCTGCTCTGTGTT 493
Query 672 TATTCTCTTTCCGGCAGGAGATGATGTTAGTCCATACAATAAGGGAAGGGAAAATACTGT 731
|||||| |||||||| ||||||||| ||||||| ||||| |||||||| |||||||||||
Sbjct 494 TATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAAGAGAAAATACTGT 553
Query 732 TTGGGGTGTTTCCCTTATGGCTGGTTATCTTGGGTTTGACGGCTTTACAAGTACATTCCA 791
|||||||| |||||||||| |||||||||||||||||| || |||||||| ||||||||
Sbjct 554 CTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTACAAGCACATTCCA 613
Query 792 AGACAAGCTCTTTAAAGGATATAACATGGAGATACATAACCAAATATTCTACACAACACT 851
|||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||| |
Sbjct 614 AGACAAACTCTTTAAAGGTTATAATATGGAAATACATAACCAGATATTCTACACAACAAT 673
Query 852 TTGTTCTTGTGTT-TTGAGTTTCACTGGACTTATATTGCAAGGGCATCTACTACCAGCTG 910
|||||| | | || || ||||| ||||| |||||||||||||| ||| |||| ||||| |
Sbjct 674 TTGTTCCTCTATTCTT-AGTTTTACTGGCCTTATATTGCAAGGACATTTACTCCCAGCAG 732
Query 911 TAGATTTTGTTTCTCTG-CATAGGGATTGTTTACTCGACATCGCTCTGCTTTCCACAGTT 969
|||| |||||||||| | |||||||||||| || | ||||||||| |||||||||| ||
Sbjct 733 TAGACTTTGTTTCTC-GACATAGGGATTGTCTATTTGACATCGCTTTGCTTTCCACTGTA 791
Query 970 GCAACAGCGAGCCAGTTCTTCATTTCTTACACAATTAGGACATTTGGTGCTCTAACATTT 1029
|||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 792 GCAACAGCCAGCCAATTTTTCATTTCGTACACCATTAGGACATTTGGTGCTCTAACGTTT 851
Query 1030 GCTGCAATCATGACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCT 1089
||||| || ||||| || |||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 852 GCTGCCATTATGACAACAAGACAGCTTGTGAGCATTATGCTCTCCTGCATTTGGTTCTCT 911
Query 1090 CATCCTCTTAGCTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGGTCTTTATATGCG 1149
|| || |||||||||||||| ||||| ||||| || || |||||||||||| |||||||
Sbjct 912 CACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGGTCTCTATATGCT 971
Query 1150 AAAAACTTACTGAA 1163
|||| |||| ||||
Sbjct 972 AAAACCTTAGTGAA 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5