BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59750.2 Length=1798 Score E Sequences producing significant alignments: (Bits) Value Ahg496108 jgi|Araly1|496108|fgenesh2_kg.8__1924__AT5G59750.1 2004 0.0 > Ahg496108 jgi|Araly1|496108|fgenesh2_kg.8__1924__AT5G59750.1 Length=1738 Score = 2004 bits (1085), Expect = 0.0 Identities = 1198/1253 (96%), Gaps = 5/1253 (0%) Strand=Plus/Plus Query 548 AGTTTGTGATCGTTGTTGACGATGAAACCGGAGATGTTGAAGGGAATCTGATCATGGCTG 607 ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| | Sbjct 454 AGTTTGTGATCGTTGTTGACGATGAAAATGGGGATGTTGAAGGGAATCTGATTATGGCGG 513 Query 608 CAACTCTTACGAGTCCAAAAGACATAGCTTTTCTGATTAAGAATGGTTCAGGTATTGTCT 667 || |||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||| Sbjct 514 CATCTCTAACGAGTCCAAAAGATATAGCCTTTCTGATTAAGAATGGTTCTGGAATTGTCT 573 Query 668 CAGTTGGTATGAAGAAAGAAAACCTTGAAAGATTAAGCCTTACACTTATGTCACCTGAAA 727 ||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||| Sbjct 574 CAGTTGGGATGAAGAAAGAATACCTCGAAAGATTAAGCCTTACACTCATGTCACCTGAAA 633 Query 728 TGGAAGACGAAGATTCCTCTGCTCCAACTTTCACCATCACTGTGGATGCAAAATCTGGAA 787 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 634 TGGAAGACGAAGATTCCTCTGCTCCAACTTTCACTATCACTGTGGATGCAAAATCCGGAA 693 Query 788 CATCAACTGGAGTATCAGCTTCAGACAGGGCGATGACGGTTCTTGCACTTTCGTCTCTCG 847 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 694 CATCAACTGGAGTATCAGCTTCAGACAGGGCGATGACGGTTCTTGCACTTTCGTCCCTCG 753 Query 848 ATGCTAAACCAGATGATTTCAGGAGGCCTGGTCATGTATTCCCTCTCAAGTACAGAGATG 907 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 754 AAGCTAAACCAGATGATTTCAGGAGGCCTGGTCATGTATTCCCTCTCAAGTACAGAGATG 813 Query 908 GTGGAGTTTTAAGGAGAGCTGGTCACACCGAAGCTTCAGTGGATCTAATGATATTGGCTG 967 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 814 GTGGAGTTTTAAGGAGAGCCGGTCACACTGAAGCTTCAGTGGATCTAATGATATTGGCTG 873 Query 968 GTTTACGTCCCCTCTCTGTTCTTTCAGCTATTCTTGATCAAGAAGATGGGTCTATGGCTT 1027 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 874 GTTTACGTCCTGTCTCTGTTCTTTCAGCTATTCTTGATCAAGAAGATGGGTCAATGGCTT 933 Query 1028 CACTGCCGTATATGAAAAAGCTTGCTACGGAACATGATATCCCCATTGTATCGTTGACTG 1087 |||| || |||||||||||||||||||| |||||||| || ||||||||||||||||||| Sbjct 934 CACTACCTTATATGAAAAAGCTTGCTACAGAACATGACATTCCCATTGTATCGTTGACTG 993 Query 1088 ATTTAATCAGATATCGAAGAAAGCGAGATAAGCTTGTTGAGAGAATCACAGTGTCTCGTT 1147 || |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 994 ATCTAATCAGATATCGAAGAAAGCGAGATAAGCTTGTGGAGAGAATCACGGTGTCTCGTT 1053 Query 1148 TGCCTACCAAATGGGGTCTTTTCCAAGCTTATTGTTATCGATCTAAACTCGATGGAACCG 1207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 TGCCTACCAAATGGGGTCTTTTCCAAGCTTATTGTTATCGATCTAAACTCGATGGAACCG 1113 Query 1208 AAAATATCGCCCTCGTTAAGGGAAACGTTGGAAATGGTGAGGACATTCTGGTGCGAGTGC 1267 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1114 AGAATATCGCCCTCGTTAAAGGAAACGTTGGAAATGGTGAGGACATTCTGGTACGAGTGC 1173 Query 1268 ATTCAGAGTGCTTGACAGGAGACATTTTTGGCTCAGCACGGTGTGACTGTGGAAACCAAT 1327 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1174 ATTCAGAGTGCTTAACAGGAGACATTTTTGGCTCAGCGCGGTGTGACTGTGGAAACCAAT 1233 Query 1328 TGGACT-TAGCCATGGAGTTAATCGAGAAAGAGGGAAGAGGAGTTGTTGTGTATCTCCGT 1386 |||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1234 TGGA-TCTAGCCATGGAGCTAATCGAGAAAGAGGGAAGAGGAGTCGTTGTGTATCTTCGT 1292 Query 1387 GGCCACGAAGGAAGAGGCATTGGCCTTGGTCACAAGCTTAGAGCTTATAACTTGCAGGAC 1446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1293 GGCCACGAAGGAAGAGGCATTGGCCTTGGTCACAAGCTTAGAGCTTATAACTTGCAGGAC 1352 Query 1447 GAAGGACACGACACTGTTCAGGCCAATGTTGAACTTGGCCTATCCATTGATTCTCGTGAA 1506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 GAAGGACACGACACTGTTCAGGCCAATGTTGAACTTGGCCTATCCATTGATTCTCGTGAA 1412 Query 1507 TACGGTATCGGTGCTCAGATGCTACGAGACATAGGAGTGAGAACAATGAGACTAATGACG 1566 |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 1413 TACGGTATCGGTGCTCAGATGCTAAGGGACATAGGAGTGAGAACAATGAGACTGATGACG 1472 Query 1567 AATAACCCTGCCAAATTCACTGGTCTGAAAGGGTACGGACTCGCTGTAGTTGGCCGTGTG 1626 |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1473 AATAACCCCGCCAAGTTCACAGGTCTGAAAGGGTACGGACTCGCTGTAGTTGGCCGTGTG 1532 Query 1627 CCGGTGGTGACACCAATCACCAAGGAGAACAGAAGATATATGGAGACCAAACGCAAGAAG 1686 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1533 CCAGTGGTGACACCAATCACCAAGGAGAACAGAAGATATATGGAGACCAAACGCAAGAAG 1592 Query 1687 ATGGGTCACATTTATATCTCTGATAACAACGATCAGCCATTAGCTTGACCCAAAAGCTTT 1746 |||||||||||||||||||||||||||||||||||||| || |||||||| |||||| || Sbjct 1593 ATGGGTCACATTTATATCTCTGATAACAACGATCAGCCTTTGGCTTGACC-AAAAGCCTT 1651 Query 1747 TGATAGAAAC-ACACACTTTTGAATTTTGTATTTATAAATTGATTCATTCTTA 1798 |||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1652 TGATAGAAACGA-ACACTTTTGAATTTTGTATTTATAAATTGATTCATTCTTA 1703 Score = 521 bits (282), Expect = 5e-147 Identities = 408/463 (88%), Gaps = 31/463 (7%) Strand=Plus/Plus Query 1 AATT-TTAAAATTTTCAGATTTTGGTTTTGTGTTGAGAACAACTCCAAAGAGACGAGAAG 59 |||| || |||||||||||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct 19 AATTCTT-AAATTTTCAGATTTGGGTTTTGTGTTGAAAACAACTCCAAGGAGACGAGAAG 77 Query 60 -C-AGCGAATCGTACG-AGCAGAGAGATATATGTTTCATTACGTCGATGATGGATTCTGC 116 | ||||||||||||| || | |||||||||||||||||||||| ||||||||||||||| Sbjct 78 CCGAGCGAATCGTACGAAG-AAAGAGATATATGTTTCATTACGTAGATGATGGATTCTGC 136 Query 117 -TT-TAT-ATCATCCTCGAATCTTTTTCGCTCACAGCTTCATCAATGGCTTGTATAGTTC 173 || ||| |||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 137 TTTATATCATCATCCTCGAATCTTTTTCGCTCACAGCTTCATCAATGGCTCGTATAGGTC 196 Query 174 TCCTAGGTTTGCTAATACTTGCTGGAGATTG-GTTAGTCGTTCAAGTTGGGAGATCAAGG 232 |||| ||||||||||||||||||||||||| || | | ||||| ||||| ||||||||| Sbjct 197 ACCTATGTTTGCTAATACTTGCTGGAGATTGAGTGA-TGGTTCACGTTGGAAGATCAAGG 255 Query 233 CTAGTGAGAATAGTGATCGCAATGTGTTCGATGAAAATCCTGTTAG-GAAAACCGACGGG 291 |||||||||||||||||||||| |||||||| |||| |||||| || | || |||||| | Sbjct 256 CTAGTGAGAATAGTGATCGCAACGTGTTCGACGAAAGTCCTGTGAGAGGAA-CCGACGAG 314 Query 292 TCGTTGTTTGATTCTGCTTCGTTTGAGACAGTTGACGCGGAAATCACGCCTGAGACTGAT 351 |||||||||||||||| || | | | | || | ||||||| |||||||||||| Sbjct 315 TCGTTGTTTGATTCTG-TT-G----A--C-G----CG-G-AAATCACTCCTGAGACTGAT 359 Query 352 GATTTCTTCGTGAGTGACGCAGAGGGTGATCCAGATTGTCCTACTCAAGGTTATTCCTCT 411 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 GATTTCTTTGTGAGTGACGCAGAGGGTGATCCAGATTGTCCTTCTCAAGGTTATTCCTCT 419 Query 412 ATTGAACT-TGCTCTTCAAGCTCTACGCAAAGGAAAGGTTTGT 453 ||||| | ||||||||||||| |||||||||||||| ||||| Sbjct 420 GTTGAA-TATGCTCTTCAAGCTTTACGCAAAGGAAAG-TTTGT 460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67495914140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5