BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59770.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358193 jgi|Araly1|358193|fgenesh1_pg.C_scaffold_8001980 887 0.0
> Ahg358193 jgi|Araly1|358193|fgenesh1_pg.C_scaffold_8001980
Length=666
Score = 887 bits (480), Expect = 0.0
Identities = 564/605 (93%), Gaps = 4/605 (1%)
Strand=Plus/Plus
Query 238 ATTTCGCTTCTGATTATTCTTAACAGCTTTTTATCGAACAAGACGA-TCATTTCTGCTTA 296
||||||||||||| ||| |||||||||||||||||||||||| ||| | || | ||||||
Sbjct 64 ATTTCGCTTCTGAGTATACTTAACAGCTTTTTATCGAACAAGGCGATTAATGT-TGCTTA 122
Query 297 CGCTTCTGCTGGATTCCTGATTAGTCTGTTTCAAACTGCTGCTATTCTTGAAGTTCTTCA 356
|||||||||||||| | |||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 123 CGCTTCTGCTGGATACTTGATTAGTGTGTTTCAAACTGTTGCTGTTCTTGAAGTTCTTCA 182
Query 357 TGGAGCTATTGGAATTGTCCCGAGTGGATTCTTGTCTCCACTGATGCAATGGAGTGGAAG 416
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 183 TGGAGCTATAGGAATTGTCCCTAGTGGGTTCTTGTCTCCACTGATGCAATGGAGTGGAAG 242
Query 417 AACTCACTTCATATTGGCTATTGTTGGACAGATCAAGGAGGTCCAGGATTCGCCGTGGCT 476
||| || ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 243 AACCCATTTCATATTGGCTATTGTTGGACAGATCAAAGAGGTCCAGGATTCCCCATGGCT 302
Query 477 GTCTA-TAACACTTGTGGCTTGGTGTATCGGTGAGATGATCAGATATCCTCATTATGCTT 535
|| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 303 ATC-ATTAACACTTGTGGCTTGGTGTATCGGCGAGATGATCAGATATCCTCACTATGCTT 361
Query 536 TTACTTGCCTCGGTAGATGTCCCTATTGGCTAACCTACCTCAGGTACACGGGATTCATCG 595
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 362 TTACTTGCCTCGGTAGATGTCCCTATTGGCTAACCTATCTCAGGTACACGGGATTCATCA 421
Query 596 TGATTTATCCAACGGGACTAGTGGGTGAATTGTTGATCATGTACAAAGCACTTCCATATG 655
| || |||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 422 TCATCTATCCAACAGGACTAGTAGGCGAATTGTTGATCATGTACAAAGCACTTCCATATG 481
Query 656 TTAAAGAAAGGAATCTTTACGCTAATTTCTTCTCTGTTTTCCCCTTCAGTTACTACGATT 715
||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 482 TTAAAGAAACGAATCTTTACGCGAAATTCTTCTCTGTTTTCCCCTTCAGTTACTACAATT 541
Query 716 TCCTTTGGGCCGTCCTCTTGGTCTACCCATTCCTTTGGTTGAAGCTTTATCTCCAGCTTT 775
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 542 TCCTTTGGGCCGTCCTCTTGGTGTACCCATTTATTTGGTTGAAGCTTTATCTCCAGCTTT 601
Query 776 TCAAACAAAGAAAGTCTAAGCTTGGAAAATCGAAGAAGCTTCACGGCAAGAGAAAGAGAA 835
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 602 TCAAACAAAGAAAGTCTAAGGTTGGAAAATCGGAGAAGCTTCACGGCAAGAGAAAGAGAA 661
Query 836 TGTGA 840
|||||
Sbjct 662 TGTGA 666
Score = 89.8 bits (48), Expect = 3e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 143 ATGTCGCCGTTTGTGAAGTTTTATCTCTTCAGTTACAATTTTCTCCAAGCTTCTGCATGG 202
|||||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGTCGCCATTCGTGACGTTTTATCTCTTCACTTACAATTTTCTCCAAGCTTCTGCATGG 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5