BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59780.3
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496112 jgi|Araly1|496112|fgenesh2_kg.8__1928__AT5G59780.3 1421 0.0
> Ahg496112 jgi|Araly1|496112|fgenesh2_kg.8__1928__AT5G59780.3
Length=983
Score = 1421 bits (769), Expect = 0.0
Identities = 919/985 (93%), Gaps = 36/985 (4%)
Strand=Plus/Plus
Query 51 agagagagagagagagagagagagaTGAAACTTGTGCAAGAAGAATACCGTAAAGGACCG 110
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AGAGAGTTAGAGAAAGAGAAAGAGATGAAACTTGTGCAAGAAGAATACCGTAAAGGACCG 69
Query 111 TGGACAGAACAGGAGGACATCCTCTTGGTCAACTTTGTCCACTTGTTCGGAGATCGAAGA 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TGGACAGAACAGGAGGACATCCTCTTGGTCAACTTTGTCCACTTGTTCGGAGATCGAAGA 129
Query 171 TGGGATTTTGTAGCGAAAGTTTCAGGTTTAAACAGAACAGGAAAGAGTTGCAGGTTAAGG 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TGGGATTTTGTAGCGAAAGTTTCAGGTTTAAACAGAACAGGAAAGAGTTGCAGGTTAAGG 189
Query 231 TGGGTTAATTACCTGCATCCTGGTCTCAAACGTGGTAAGATGACTCCACAAGAAGAGCGT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TGGGTTAATTACCTGCATCCTGGTCTCAAACGTGGTAAGATGACTCCACAAGAAGAGCGT 249
Query 291 TTAGTCCTTGAGCTTCACGCCAAATGGGGAAACAGGTGGTCAAAAATTGCCCGGAAATTA 350
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 250 CTAGTCCTTGAGCTTCACGCCAAATGGGGAAACAGATGGTCAAAAATCGCCCGTAAATTG 309
Query 351 CCGGGGAGAACAGATAATGAGATAAAGAACTACTGGAGGACTCATATGAGGAAGAAGGCT 410
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 310 CCGGGAAGAACGGATAACGAGATAAAGAATTACTGGAGGACTCATATGAGGAAGAAGGCT 369
Query 411 CAAGAGAAGAAGCGACCTATGTCTCCTACTTCCTCATCTTCAAACTGTTGCTCATCATCT 470
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 370 CAAGAGAAGAAGCGACCTATGTCTCCAACTTCTTCATCTTCAAACTGCTGCTCATCATCT 429
Query 471 ATGACCACTACTACTAGTCAAGACACTGGAGGCTCCAACGGGAAAATGAATCAAGAATGC 530
|||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 430 ATGACCACTACTACTACTCAGGACACTGGCGGCTCCAATGGGAAAATGAATCAAGAATGC 489
Query 531 GAAGACGGGTACTACTCCATGGATGACATATGGAGAGAGATTGATCAGTCTGGAGCAAAC 590
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GAAGACGGATATTACTCGATGGATGACATATGGAGAGAGATTGATCAGTCTGGAGCAAAC 549
Query 591 GTTATTAAACCGGTAAAAGACAACTACTACTCAGAGCAAAGCTGTTACTTGAATTTCCCT 650
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 550 ATTATTAAACCGGTAAAAGACATCTACTACTCAGAGCAAAGCTGTTACTTGAATTTCCCT 609
Query 651 CCTCTGGCTTCTCCAACATGGGAAAGTTCCTTGGAATCTATATGGAACATGGATGCAGAT 710
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 610 CCTCTGGCTTCTCCAACATGGGAAAATTCCTTGGAATCTATATGGAACATGGATGCAGAT 669
Query 711 GAAAGTAAGATGTCTTCTTTTGCTATTGATCAGTTTCCTCTAAGTTTTGAACATGGTAG- 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GAAAGTAAGATGTCTTCTTTTGCTATTGATCAGTTTCCTCTAAGTTTTGAACATGGTAGA 729
Query 770 T----G-G-TCGCCT-T-TA-GTCTAGGATTTGATTCATTTGGAATGTTTATATGTGCAG 820
| | | ||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct 730 TCATCGTGGTCGTCTATATAAGTCTAGGATTTGATTCATTTGGAATGTTTATATGTGCAG 789
Query 821 CATATATATGTTATCAAACGACGACTGTAGTAGTTT-CCTATGACTTACATCAAAAATCA 879
|||||||||||||||||||||| ||||||||||| || ||||||||||||| ||| |
Sbjct 790 CATATATATGTTATCAAACGAC---TGTAGTAGTTTTCC-ATGACTTACATCAGAAA-C- 843
Query 880 CCACCCACTGTACTAATCTCATAAGTAGTCATCATC-T--TATGCCTTTGTTTAGTTTGT 936
| || ||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 844 C-AC----TGTACTAATCTCATATGTAGTCATCATCATCCTATGCCTTTGTTTAGTTTGT 898
Query 937 AGAGTGAGTGAAAAGA----TGTGTAATAC-A-A-GTCAGAACTC--T--ATTTCCAAAA 985
|||| ||||||||||| |||||||||| | | |||||||||| | ||||||||||
Sbjct 899 AGAGCGAGTGAAAAGAACACTGTGTAATACTACAAGTCAGAACTCGATCTATTTCCAAAA 958
Query 986 TAAATAGACTTTTGAAGTTTCTGTG 1010
|||||||||||||||||||||||||
Sbjct 959 TAAATAGACTTTTGAAGTTTCTGTG 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37551073245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5