BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59800.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496115 jgi|Araly1|496115|fgenesh2_kg.8__1931__AT5G59800.1 1480 0.0
> Ahg496115 jgi|Araly1|496115|fgenesh2_kg.8__1931__AT5G59800.1
Length=1239
Score = 1480 bits (801), Expect = 0.0
Identities = 1105/1240 (89%), Gaps = 67/1240 (5%)
Strand=Plus/Plus
Query 68 CACTCTCGTCTCGGGCTTTTGGGTTAGACCCGGCAACGAAGCGATGCAGACGAGATCCTC 127
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 CACACTCATCTCGGGTTTTTGGGTTAGACCCGGCAACGAAGCGATGCAGACGAGATCCTC 102
Query 128 TTCCTCTCCTTCGGCTAACCACCGCCGCGAAACCCAGTTGCAGATCGCGGATCCCACCTC 187
|||||| || ||| || ||||||||||||||| |||| |||| ||||| |||||||| ||
Sbjct 103 TTCCTCACCCTCGCCTGACCACCGCCGCGAAAGCCAGCTGCAAATCGCCGATCCCACTTC 162
Query 188 GTTTTGCGGCAAGATTATGCCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCA-ACA 246
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |
Sbjct 163 GTTTTGCGGCAAGATTTTACCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCAGA-A 221
Query 247 ACGG-TGTTGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCACTA 305
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 222 ACGGCAG-TGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCTCTA 280
Query 306 GAAGCTATTCACAGACACTTGGCTGGAGAAGTAAATGACAGACGCTTGACTCGAGCAGGA 365
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 281 GAAGCTATTCACAGACACTTGGCTCGAGAAGTAAATGACAAACGTTTGACTCGAGCAGGA 340
Query 366 TCCTTTTTCCAGGACAA-GACAAGGGTTTATGAAGGATCAAGAA-C---C--AAACAGGA 418
||||| |||||||| || ||| |||||||||||||||| ||||| | | ||||||||
Sbjct 341 TCCTTCTTCCAGGA-AAGGACTAGGGTTTATGAAGGATTAAGAACCAAACAAAAACAGGA 399
Query 419 TCACTGCGGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCCGTTGA 478
|||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 400 TCACCGCAGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCTGTTGA 459
Query 479 GGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGG 519
Query 539 AAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCCCGG-AACTC-T 596
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 520 AAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCC-GGTAAC-CGT 577
Query 597 ATAGAGCAGCAGCTTAGGGTTTTACAGAATCGCCGTGGCCATTCCAAAGATTTCAGGTTA 656
| ||| |||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 578 ACAGATCAGCAGCTTATGCTTTTACAGAATCGCCGAGGCCATTCCAAAGATTTCAGTTTA 637
Query 657 CCTGATGGATGGATCGTTGAGGAGAAACCGCGAAGAAGTTCCAGTCATATAGACAGGTCA 716
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 638 CCTGATGGATGGATCATTGAGGAGAAACCGCGAAGAAATTCCAGTCATATAGACAGGTCT 697
Query 717 TATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTG 757
Query 777 -ATATCAGTCGGGAACATTACACTTGACTCGGTTTCTATGGTGCATTCGGAGCGGCTTCC 835
| | |||||| ||||| |||| ||||| ||||||||||| ||||||||| |
Sbjct 758 CA-AGCAGTCGAGAACAGTACAGTTGAC---------ATGGTGCATTCCGAGCGGCTTGC 807
Query 836 TCTTCTGATGAACCGGAATGGTATCAGATTTCAGAGCGAAGTTATTGACCCAAACCCACC 895
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 808 TCTTCTGATGAACCGGAATGGTACCAGATTTCAGAACGAAGTTATCGACCCAAACCCACC 867
Query 896 GAAGAAAGTAAAGTGGGTTCTTACCGGTTCC-GGCGGAAACATGTTCACTGCGAATGTAC 954
||||||||| |||||||| ||||||||| || |||||| ||| ||| ||||||||||||
Sbjct 868 GAAGAAAGTTAAGTGGGTCCTTACCGGT-CCAGGCGGAGACAAGTTTACTGCGAATGTAA 926
Query 955 GCGGATCGAATGTCTCTAGCTTGGTTAAACATACATGGTCCGAGGCATTTGTTTCACTGA 1014
|||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 927 GCGGATCGGATGTCTCTAGCTTGGTTAAACAGACATGGTCCGAGGCGTTTGTTTCACTAA 986
Query 1015 TCGAAGACCGCTCTTAACCGA-A-CT-A------GGTTTGTCAATTTAGTTTACGGTTAA 1065
|| |||||||||||||||||| | || | ||||| ||||||| ||||||||||||
Sbjct 987 TCCAAGACCGCTCTTAACCGATATCTGAATCCTAGGTTTATCAATTTGGTTTACGGTTAA 1046
Query 1066 CAAGAGCTAATTCCAGTCGGTAGTCTGTTCAAGTTCATACTTCGGTCTAGTTTATAACTG 1125
||||||||| ||| | | | || || | | |||||||||||||||
Sbjct 1047 CAAGAGCTAGTTC-A-T----A--CT-TT---G----------G-TCTAGTTTATAACTG 1083
Query 1126 ACCCAAATAACCGGCTTTT-CCAAAATTTTCAATTTCATATTCGGTGTGAACCGGATTTT 1184
|||||||||||||| |||| ||||| ||||||| |||||||||| |||||||||||||||
Sbjct 1084 ACCCAAATAACCGG-TTTTGCCAAATTTTTCAAGTTCATATTCG-TGTGAACCGGATTTT 1141
Query 1185 GGTTATTCGGGCAGGTATGTTAGTGCTCATATTAAGTTTGGGGACTTAAAATTCGAA-GT 1243
||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |
Sbjct 1142 GGTAATTCGTGCAGGTATGTTAGTGCTCATATTAAGTTTGGGGACTTTAAAT-CGGATGG 1200
Query 1244 TGTCTGTAGTAAGGTGTAAATAATGGTTCAAAATTCCAAG 1283
|| |||||||||||||||||||||||| ||| || ||||
Sbjct 1201 TGG-TGTAGTAAGGTGTAAATAATGGTTGAAATTTTCAAG 1239
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 CGTTACGTGAAAGCAGTGACAGAGAAATAAGAAGTGTGTGTG 42
|||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CGTTACGTAAAAGCAGTGACAGAGAAATAAGAAGTGTGTGTG 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5