BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60050.1
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358221 jgi|Araly1|358221|fgenesh1_pg.C_scaffold_8002008 2377 0.0
> Ahg358221 jgi|Araly1|358221|fgenesh1_pg.C_scaffold_8002008
Length=1503
Score = 2377 bits (1287), Expect = 0.0
Identities = 1439/1511 (95%), Gaps = 15/1511 (1%)
Strand=Plus/Plus
Query 366 ATGGCGTCAAGAGAAGTATCAACGATGATCAAACAAGGGTTTATCGCAGACCCTtctctc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCAAGAGAAGTATCAACGATGATCAAACAAGGGTTTATCGCAGACCCTTCTCTC 60
Query 426 tctttttctccgtcaagaatctcatctccgattaaactctccaccgcctctcctcctctt 485
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 61 TCTTTTTCTCCGTCAAGAATCACATCTCCGGTTAAACTCT------CCTCTCCTCCTCTT 114
Query 486 cctccgccacctcct------ccgccaccaaacgaatcgactctctcAAACCCGACTCTT 539
||||||||||||||| ||||| ||||||| |||| ||| |||||| |||||||||
Sbjct 115 CCTCCGCCACCTCCTCCGCCGCCGCCGCCAAACGTATCGGCTCACTCAAATCCGACTCTT 174
Query 540 TTCGATATGATGTCAGACGAGCACAACCGCGAGCTACCAAGGAGGAAATCTCACGCGCGC 599
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 TTCGACATGATGTCAGACGAGCACAACCGCGAGCTACCACGGAGGAAATCTCACGCGCGT 234
Query 600 GTGGCTCAAATCTTGACGGAGTTCAAGAACGGCGTCGTTTACGGCCACAGCCTCGGGCCA 659
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 235 GTGGCTCAAATCTTGACGGAGTTCAAGAACGGCGTCGTTTACGGCCATAGTCTTGGGCCA 294
Query 660 GGAGACGTTAAGCTGACTGTGGTGGGCAAAGACGGTTACAGAGTCACTATGGATGTTCAT 719
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 295 GGCGACGTTAAGCTGACTGTGGTGGGTAAAGACGGTTACAGAGTCACCATGGATGTTCAT 354
Query 720 CGGAAGGTTTTATCTGAGAAGAGTAGGTTTTTTATGGAGAAGATGAATTCTAGAAGAGAG 779
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 355 AGGAAGGTTTTATCAGAGAAGAGCAGGTTTTTCATGGAGAAGATGAATTCTAGAAGAGAG 414
Query 780 AAAGGAGTTTCTCACATGGTGGAGATAAGTGAGTGTGATGATTTAGAGATTTATGTAGAG 839
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAAGGAGTATCTCACATGGTGGAGATAAGTGAGTGTGATGATTTAGAGATTTATGTAGAG 474
Query 840 ACTGTTGTTTTGATGTATAGTGATGATCTCAAGAAGAAGTTGATCGGTGAAAATGTCATC 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ACTGTGGTTTTGATGTATAGTGATGATCTCAAGAAGAAGTTGATCGGTGAAAATGTCATC 534
Query 900 AAAATCTTGGCTTTACTCAAGGTTTCTGCAGCTATCTCGTTTGATGAAGGCGTTATGTCA 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 AAAATCTTGGCTTTACTCAAGGTTTCTGCAGCTATCTCGTTTGATGAAGGAGTTATGTCA 594
Query 960 TGTTTGGAGCATTTGGAAGCTGTACCATGGTCAGAAGATGAAGAAGAGACTGTTGTGACT 1019
|||||| |||||||||||||||| || |||||||||||||||||||||| |||||| ||
Sbjct 595 TGTTTGAAGCATTTGGAAGCTGTTCCTTGGTCAGAAGATGAAGAAGAGATTGTTGTTTCT 654
Query 1020 TGTCTTGAAGAGCTTCATCTTCCTGATGATTCTGTCACTTTGATTCTTCAGAGAGTTTCA 1079
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 TGTCTTGAAGAGCTTCATCTTCCTGACGATTCTGTCACTTTGATTCTTCAGAGAGTTTCA 714
Query 1080 TCTCAACCTTCGACTTCCTCAACGAGAACTAGAACTGATGATATCTT-TTCGAAGCTTCT 1138
||||||||| | |||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 715 TCTCAACCTACCCCTTCCTCAACGAGAACTAGAACCGATGATATCTTCTT-GAAGCTTCT 773
Query 1139 CACTGGTGTTCTACAAGCGAAAGATGATAAAGCTCGGCGAGAGATGAAAGTTTTGATCTT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CACTGGTGTTCTACAAGCGAAAGATGATAAAGCTCGGCGAGAGATGAAAGTTTTGATCTT 833
Query 1199 TAAATTGGTTAGAGAAGAAGCCGATTATGATGTCTCTAGAGACACACTCTATGGTTTGTG 1258
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 834 TAAATTGGTCAGAGAAGAAGCTGATTATGATGTCTCTAAAGACACACTCTATGGTTTGTG 893
Query 1259 CCATCGATGTCTCACGTCTCTTGTGCTTTGCTTATCTGAAGTGACCACACAGATGAATGA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCATCGATGTCTCACGTCTCTTGTGCTTTGCTTATCTGAAGTGACCACACAGATGAATGA 953
Query 1319 TCCGGGGAAAGACCGTGGTGCTCTGATGGGAGAAATCGCCAGAGAAGCTGATAACATGCT 1378
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 TCCGGGGATAGACCGTGGTGCTCTGATGGGAGAAATCGCCAGAGAAGCTGATAACATACT 1013
Query 1379 GTGGATGGTAGATATATTGATTGAGAAGAAACTGTGCAGTGAGTTTGTGAAACTATGGGC 1438
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1014 GTGGATGGTAGATATATTGATTGAGAAGAAACTGTGCGGTGAGTTTGTGAAACTATGGGC 1073
Query 1439 GGATCAAAAGGAGCTAGCGAATCTTCATTCCAAGATCCCAACGATGTACAGACACGAAAT 1498
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1074 GGATCAAAAGGAGCTAGCGAATCTTCATTCCAAGATCCCGACGATGTACAGACACGAAAT 1133
Query 1499 AAGCAAGATCACCGCGCAGATATGTGTTGGTATTGGTAAAGGAAGGATCTTGGTGAATCG 1558
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 AAGCAAGATCACTGCGCAGATATGTGTTGGTATTGGTAAAGGAAAGATCTTGGTGAATCG 1193
Query 1559 GGAGACTAGGTTTGCGGTTCTGAATACATGGTTAGAGGCTTTGTATGATGATTTCGGGTG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GGAGACTAGGTTTGCGGTTCTGAATACATGGTTAGAGGCTTTGTATGATGATTTCGGGTG 1253
Query 1619 GATGAGACGGTTATCCTCGAGATCTCTGGATAGGAAACTGGTGGAGGATGGACTCAGCCA 1678
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GATGAGACGGTTATCCTCAAGATCTCTGGATAGGAAACTGGTGGAGGATGGACTCAGCCA 1313
Query 1679 GACCATATTGACTTTGTCGTTGAGACAACAACAAGTGATTCTGATGAAATGGTTTGATCG 1738
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1314 GACCATATTGACCTTGTCGTTGAGACAACAGCAGGTGATTCTGATGAAATGGTTTGATCG 1373
Query 1739 GTTTCTGAGCAAAGGTGATGATTGTCCAAATGTGCAACGAGCATTTGAGGTGTGGTGGAG 1798
||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1374 ATTTCTGACCAAAGGCGATGATTGTCCAAATGTTCAGCGAGCATTTGAGGTGTGGTGGAG 1433
Query 1799 AAGAGCTTTCATAAGACAGGTCTTGACAGAGCCCGATGAGCCTCGGCTGCAGATTACACT 1858
||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||
Sbjct 1434 AAGAGCTTTCATAAGACAGGTCTTGACAGAGCCAGATGCGCCGCAGCTGCAGATTACACT 1493
Query 1859 CTATTGACTAA 1869
|||| ||||||
Sbjct 1494 CTAT-GACTAA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74352158240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5