BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60100.2
Length=2182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496148 jgi|Araly1|496148|fgenesh2_kg.8__1964__AT5G60100.1 1439 0.0
Ahg952435 jgi|Araly1|952435|scaffold_7100005.1 411 1e-113
Ahg917759 jgi|Araly1|917759|Al_scaffold_0008_2510 279 4e-74
> Ahg496148 jgi|Araly1|496148|fgenesh2_kg.8__1964__AT5G60100.1
Length=1961
Score = 1439 bits (779), Expect = 0.0
Identities = 942/1020 (92%), Gaps = 13/1020 (1%)
Strand=Plus/Plus
Query 1039 CAG-TCTAGCGGAAGCGGAAGTGAGAGTGGAATACATGACAAGAAGTCGGTGAAACCTGA 1097
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 946 CAGCTCTAGCGGAAGCGGAAGTGAGAGTGGAATACAGGACAAGAAGTCGGTGAAACCTGA 1005
Query 1098 AAGCACCCAAGGGTCAGAAAATGATGCCAGCATCAGTGATGAACACAG-GAATGAAAG-T 1155
||||||| |||||||||||||||||||||||||||||||||||| | | ||| | ||| |
Sbjct 1006 AAGCACCGAAGGGTCAGAAAATGATGCCAGCATCAGTGATGAACTC-GAGAA-GGAAGAT 1063
Query 1156 GGGAGTAGTGGTGGTTTGAGTAACCAAGATGGTGGGAGTGATAACGGGAGTGGAACTCAG 1215
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1064 GGGAGTAGTGGTGGTTTGAGTAACCGAGATGGTGGAAGTGATAACGGGAGTGGAACTCAG 1123
Query 1216 AGTTCTTGGACAAAAAGAGCCAGTGATACTAAGAGCACCTCGCCTTCAAATCAATTTCCC 1275
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1124 AGTTCTTGGACCAAAAGAGCCAGTGATACTAAGAGCACCTCGCCTTCAAATCAGTTGCCC 1183
Query 1276 GATGCACCCAACAAGAAAGGAACCTATGAAAATGGATGTGCACATGTTAATAGACTGAAG 1335
||||||||||| |||||||||||||||| ||||||||| | || |||||||| |||||||
Sbjct 1184 GATGCACCCAATAAGAAAGGAACCTATGGAAATGGATGGGTACGTGTTAATAAACTGAAG 1243
Query 1336 GAGGCTGAAGATCAGAAGGAACAAATAGGCACGGGATCACAGACAGGAATGTCTATGAGT 1395
|||| |||||||||||| ||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1244 GAGGTTGAAGATCAGAAAGAACAAATAGGCACGGGTTCGCAGACAGGTATGTCTATGAGT 1303
Query 1396 AAGAAAGCTGAAGAACCA-GGAGATCTTGAAAAGAATGCAAAGTATTCTGTTCAAGCTTT 1454
||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1304 AAGAAAGCTGAAGAA-CACGGAGATCTGGAAAAGGATGCAAAGTATTCTGTTCAAGCTTT 1362
Query 1455 GGAGAGAAACAATGATGACACGCTGAATCGCTCTTCTGGTAACTCACAAGTAGAAAGCAA 1514
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1363 GGAGAGAAACAATGATGATACGCTGAATCGCTCTTCTGGTAACTCACAAGGAGAAAGCAA 1422
Query 1515 AGCACCTTCATCTAACCGAGAAGATTTGCAATCACTCGAGCAAACTCTGaaaaaaaCAAG 1574
| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1423 AACAGCTTCATCTAACCGAGAAGTTTTGCAATCACTCGAGCAAACTCTGAAAAATCCAAG 1482
Query 1575 AGAGGATAGAGATTACA-AAGTCGGTGATCGAAGTGTGTTGAGGCATTCAAATCTCTCTG 1633
||||| | ||||||||| || ||||||||| |||| | |||||||||||||||| |||||
Sbjct 1483 AGAGGCTGGAGATTACAGAA-TCGGTGATCAAAGTATTTTGAGGCATTCAAATCACTCTG 1541
Query 1634 CATTCTCAAAATACAATAATGGTGCTACTTCTGCTAAGAAGGCTCCAGAAGAAAATGTGG 1693
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1542 CGTTCTCAAAATACAATAATGGTGCTACTTCTGCTAATAAGGCTCCAGAAGAAAACGTGG 1601
Query 1694 AAAGTTGTTCTCCTCATGACAGTCCTATTGCAAAACTGTTGGGTTCGAGTTCAAGCAGTG 1753
||||||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||||
Sbjct 1602 GAAGTTGTTCTCCTCATGGCAGTCCTGTTGGGAAACTGTTGGGTTCGGGTTCGAGCAGTG 1661
Query 1754 ACAATCCTTTAAAGCAGCAGTCTAGTGGAAGTGACCGATGGGCACAAAGAGAAGCTGCTT 1813
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1662 ACAATCCTTTAAATCAGCAGTCTAGTGGAAGTGACCGTTCGGCACAAAGAGAAGCTGCTT 1721
Query 1814 TGATGAAGTTTCGCCTTAAACGTAAAGAGCGATGTTTTGAGAAAAAGGTTAGGTACCATA 1873
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1722 TGATGAAGTTTCGTCTTAAACGTAAAGAGCGATGTTTTGAGAAGAAGGTAAGGTACCATA 1781
Query 1874 GCAGGAAGAAACTAGCTGAGCAACGGCCTCACGTCAAAGGTCAATTCATTCGCAAGAG-- 1931
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1782 GCAGGAAGAAACTAGCCGAGCAACGGCCTCGCGTCAAAGGTCAATTCATTCGCAATCCTT 1841
Query 1932 -GGATGATCATAAATCAGGAAGTGAAGACAATTGAACAACAAAATTGGTATAGAAGAGAG 1990
||||| | |||||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 1842 TGGATGCTTATAAATCAGGAAGTGACGACAGTTGAACAACAAAATTGATATAGAAGAGAG 1901
Query 1991 ATCCACCTCCAATATCTGAAGAAC-AGAAGAAAATTTCACAAAGTGGCAttttttttttt 2049
||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1902 ATCCATTTCCAAGATCTGAAGAACCAGAAGAAACTTTCACAAAGTGGCATTTTTTTTTTT 1961
Score = 1279 bits (692), Expect = 0.0
Identities = 888/975 (91%), Gaps = 43/975 (4%)
Strand=Plus/Plus
Query 3 tttaaattttctttctttttattc-tattttAGTAGCAATTTGG-TTCTGTAAAGTTGTT 60
|||||| |||||||||||||| | |||||||||||||| |||| |||||||||||||||
Sbjct 1 TTTAAAATTTCTTTCTTTTTA--CATATTTTAGTAGCAA-TTGGATTCTGTAAAGTTGTT 57
Query 61 GGTAAAAGAAAAA--TAGATACGAATCAAAACATTTTTGAATGATTAGGTGATTAAA-TG 117
||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 58 GGTAAGAGAAAAAGTTAGATACGAATCAAAACATTTTTGGATGATTAGGTGATTAAATTG 117
Query 118 CTAAGCAAATCAGATTAAGCAAAAATCTGTTC-TTTTTTGGTTGTAATTTG-GTTTTT-C 174
||||| || | || | |||||||| |||||| ||||||||||| |||||
Sbjct 118 CTAAG-----CA-A--AA-C----ATCTGTTCTTTTTTTCGTTGTAATTTGTTTTTTTGA 164
Query 175 AAGTCAGATATGGTGAGAGATTCTGGTGGTGGTGGTGTTCATCA-ATG-GATTATGTGAA 232
||||||| |||||| ||||||||||||||||||||||||| ||| || | || | ||
Sbjct 165 AAGTCAGGTATGGTAAGAGATTCTGGTGGTGGTGGTGTTCTTCATTTGAGGTT-T-TGGT 222
Query 233 AAAGGGATTAGAATAAGTTTGGGGAAAGAAGAAATGTGCAAGTGTTATGTCAGTGTAGAG 292
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAGGGATTAAAATAAGTTTGGGGAAAGAAGAAATGTGCAAGTGTTATGTCAGTGTAGAG 282
Query 293 GGGAAGTTTCTGCAGAATCTTAGCTGTTACTTGATGCTGCTTCTATTCTATCTTGTTCAT 352
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 283 GGGAAGTTTCTGCAGAATCTTAGCTGTTGTTTGATGCTGCTTCTATTCTATCTTGTTCAT 342
Query 353 GGAGGCTGGTCTTGACACTTTCATGAGATATTAGTA-TTCTAAAAATGTGTTTTAATAAC 411
||||||||||||||||| ||| | | |||| | |||||||||||||||||||||||
Sbjct 343 GGAGGCTGGTCTTGACA-TTT--T---CT-TTAG-ATTTCTAAAAATGTGTTTTAATAAC 394
Query 412 ATTGAAACTGGTGATGAAGTGGAAACCGAGAGGCAAGTGTTTGGTTCATCTGAAGAAGAT 471
| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||
Sbjct 395 AACGAAACTGGTGATGAAGTGAAAACCGAGAGGCAAGTGTTTGTTTCATCCGAAGAAGAT 454
Query 472 GAATTTCGAGTTGAAGATACTGCT--AGA-AATACCAACAA--TG-TACAGATTTCTCAA 525
||||||||||||||||||||| || ||| || ||||||| || ||||||||||||||
Sbjct 455 GAATTTCGAGTTGAAGATACTCCTGGAGATGATGCCAACAATTTGATACAGATTTCTCAA 514
Query 526 CAACAGCAGCAACCGCTAGCTCATGTTGTGAAGTGGGAGAGGTATCTCCCAGTTAGATCG 585
||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 515 CAACAACAGCAACCGCTAGCTCCTGTTGTTAAGTGGGAGAGGTATCTCCCGGTTAGATCG 574
Query 586 CTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACACGCCATATTGTTACTGCCCTTTTA 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACACGCCATATTGTTACTGCCCTTTTG 634
Query 646 AAGAATTGCAGCTATGAAGTTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTA 705
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 635 AAGAATTGCAGCTATGAAGTTACTGCTGTTTCGGATGTCCTTGAAGCCTGGAGAATTCTA 694
Query 706 GAAGATGAGAAAAGTTGCATTGATCTTGTCTTAACAGAGGTTGACATGCCTGTGCATTCA 765
|||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |||||
Sbjct 695 AAAGATGAGAAGAGTTGCATTGATCTTGTATTAACAGAGGTTGTCCTGCCTGTCCATTCT 754
Query 766 GGAACCGGTCTGCTGTCCAAGATTATGAGCCATAAGACACTTAAGAACATCCCCGTCATA 825
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GGAACTGGTCTGTTGTCCAAGATTATGAGCCATAAGACACTTAAGAACATCCCCGTCATA 814
Query 826 ATGATGTCATCACATGATTCTATGGTTCTGGTCTTTAAGTGTTTGTCGAATGGTGCTGTT 885
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATGATGTCATCTCATGATTCCATGGTTCTGGTCTTTAAGTGTTTGTCGAATGGTGCTGTT 874
Query 886 GATTTTCTCGTGAAACCCATTAGAAAGAACGAACTAAAGAATCTTTGGCAACATGTCTGG 945
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 875 GATTTTCTCGTGAAACCCATTAGAAAGAACGAACTAAAGAATCTTTGGCAGCATGTCTGG 934
Query 946 AGAAGATGTCACAGC 960
|||||||||||||||
Sbjct 935 AGAAGATGTCACAGC 949
> Ahg952435 jgi|Araly1|952435|scaffold_7100005.1
Length=349
Score = 411 bits (222), Expect = 1e-113
Identities = 263/282 (93%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 389 TTCTAAAAATGTGTTTTAATAACATTGAAACTGGTGATGAAGTGGAAACCGAGAGGCAAG 448
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 13 TTCTAAAAATGTGTTTTAATAACAACGAAACTGGTGATGAAGTGAAAACCGAGAGGCAAG 72
Query 449 TGTTTGGTTCATCTGAAGAAGATGAATTTCGAGTTGAAGATACTGCT--AGA-AATACCA 505
|||||| |||||| |||||||||||||||||||||||||||||| || ||| || |||
Sbjct 73 TGTTTGTTTCATCCGAAGAAGATGAATTTCGAGTTGAAGATACTCCTGGAGATGATGCCA 132
Query 506 ACAA--TG-TACAGATTTCTCAACAACAGCAGCAACCGCTAGCTCATGTTGTGAAGTGGG 562
|||| || ||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 133 ACAATTTGATACAGATTTCTCAACAACAACAGCAACCGCTAGCTCCTGTTGTTAAGTGGG 192
Query 563 AGAGGTATCTCCCAGTTAGATCGCTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACAC 622
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AGAGGTATCTCCCGGTTAGATCGCTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACAC 252
Query 623 GCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAG 664
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 253 GCCATATTGTTACTGCCCTTTTGAAGAATTGCAGCTATGAAG 294
> Ahg917759 jgi|Araly1|917759|Al_scaffold_0008_2510
Length=462
Score = 279 bits (151), Expect = 4e-74
Identities = 171/181 (94%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 613 GACTCAACACGCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAGTTACTGCT 672
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 112 GACTCAACTCGCCATATTGTCACTGCCCTTTTGAAGAATTGCAGCTATGAAGTTACTGCT 171
Query 673 GTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAAAGTTGCATTGATCTT 732
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 172 GTTCCGGATGTTCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAGAGTTGCATTGATCTT 231
Query 733 GTCTTAACAGAGGTTGACATGCCTGTGCATTCAGGAACCGGTCTGCTGTCCAAGATTATG 792
|| ||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 232 GTATTAACAGAGGTTGTCATGCCTGTGCATTCTGGAACTGGTCTGTTGTCCAAGATTATG 291
Query 793 A 793
|
Sbjct 292 A 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82122568220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5