BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60270.1
Length=2299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496163 jgi|Araly1|496163|fgenesh2_kg.8__1979__AT5G60270.1 3517 0.0
Ahg950784 jgi|Araly1|950784|scaffold_802671.1 385 9e-106
> Ahg496163 jgi|Araly1|496163|fgenesh2_kg.8__1979__AT5G60270.1
Length=2222
Score = 3517 bits (1904), Expect = 0.0
Identities = 2082/2168 (96%), Gaps = 11/2168 (1%)
Strand=Plus/Plus
Query 2 TTTGTTTCATTACCAATGATTCGAGGATTGCTTTTGGGAATCATCTGGATGATATTTTGT 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTTTCATTACCAATGATTCGAGGATTGCTTTTGGGAATCATCTGGATGATATTTTGT 60
Query 62 GTTTGTTCATCATTTCAGCAAGAGACGCCGTTTGTTTACAACAACTTTGGTCACGTAGAT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 GTTTGTTCATCATTTCAGCAAGAGACGCCGTTTGTTTACAACAACTTTGGTCAAGCAGAT 120
Query 122 CATCTTCACCTTGACGGTAGTGCAAGAATCATTCCCAGTGGTGGTATCCTGCAACTGACA 181
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CATCTTCACCTTGACGGTAGTGCAAGAATCATTCCTAGTGGTGGTATCCTGCAACTGACA 180
Query 182 AATGCAACCAATAGCCAAATAGGTCATGTTTTCTACGAGAAGCCGATTGAGTTCAAATCA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATGCAACCAATAGCCAAATAGGTCATGTTTTCTACGAGAAGCCGATTGAGTTCAAATCA 240
Query 242 TCTGAATCAGTCTCGTTCTCGACATATTTTGTGTGTGCACTGCTCCCTGCTGGTGATCCG 301
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 241 TCTGAATCAGTCTCGTTCTCGACACATTTTGTGTGTGCACTGCTCCCTGCAGGTGATCCG 300
Query 302 AGTGGCCATGGCATGACCTTTTTTGTGTCTCATTCCACTGATTTCAAAGGCGCAGAAGCA 361
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 301 AGTGGCCATGGCATGACCTTTTTTGTTTCTCATTCCACTGATTTCAAAGACGCAGAGGCA 360
Query 362 ACTCGATACTTCGGGATTTTCAACAGAAATGGTTCTACTTCCACACGTGTGTTGGCTGTA 421
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ACTCGATACTTCGGGCTTTTCAACAGAAATGGATCTACTTCCACACGTGTGTTGGCTGTA 420
Query 422 GAGCTTGACACTTCTCTAGCTTCAGATGTGAAAGACATCAGCGATAATCATGTTGGGATT 481
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 421 GAGCTTGACACTTCTCTAGCTTCCGATGTGAAAGACATCAATGATAATCATGTTGGGATT 480
Query 482 GATGTGAACAGCGCAGAGTCTATTACATCTGCCAATGCTTCTTATTTTTCAGACAAAGAA 541
|||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 481 GATGTGAACAGCGCGGAGTCTGTGACATCTGCCAATGCTTCTTATTTCTCAGACAAAGAA 540
Query 542 GGGAAGAAGATTGACATAAAACTCTTGAGTGGTGATCCTATCCAGGTTTGGGTGGACTAT 601
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAAGAATATAGACATAAAACTCTTGAGTGGTGATCCTATCCAGGTTTGGGTGGACTAT 600
Query 602 GAAGGAACAACGCTCAACGTTTCATTGGCTCCTCTTAGAAACAAGAAACCAAGCCGACCT 661
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 601 GAAGGATTAACACTCAACGTTTCATTGGCTCCTCTTAAAAACAAGAAACCAAGCAGACCT 660
Query 662 CTTTTGTCATCAACATCCATCAATCTAACTGATATTTTGCAAGGTAGAAGAATGTTTGTT 721
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 CTTTTGTCGTCAACATCCATCAATCTTACTGATATTTTGCAAGGTAGAAGAATGTTTGTC 720
Query 722 GGGTTTTCTGGCTCAACCGGATCAAGCATGAGTTACCAGTACATACTCGGGTGGAGTTTC 781
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGTTTTCTGGCTCAACCGGGTCAAGCATGAGTTACCAGTACATACTCGGGTGGAGTTTC 780
Query 782 AGCAAAAGCATGGCGTCTCTGCCGAACATTGACATCTCAAAACTTCCCAAAGTTCCTCAC 841
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 AGCAAAAGCATGGCGTCTCTGCTGAACATTGACATCTCAAAACTTCCCAAAGTTCCTCAC 840
Query 842 TCTAGCACTAAAAAGAAGTCTACATCTCCTGTGCTCAGTGTTCTGCTTGGTTTAATAGCT 901
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 841 ACTAGCACTAAAAAGAAGTCTACATCTCCTATGCTCGGTGTTCTGCTTGGTTTAATAACT 900
Query 902 TTCATAGTTTTGGGGATTCTTGTTGTAGCTTATTTGTATAGGAGAAACTTGTACTCTGAA 961
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 901 TTCATAGTTTTGGGGATTCTTGTTGCAGCTTATTTGTATAGGAGAAACTTGTACGCTGAA 960
Query 962 GTAAGAGAGGAATGGGAAAAAGAGTATGGTCCAATTAGGTATTCCTACAAATCTCTATAC 1021
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 961 GTAAGAGAGGAATGGGAAAAGGAGTATGGTCCACTCAGGTATTCCTACAAATCTCTATAC 1020
Query 1022 AAAGCAACCAAAGGATTCAATAGGAGTGAATTTCTTGGGAGAGGAGGTTTTGGTGAAGTC 1081
|||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGCAACAAAAGGGTTCAATAGGACTGAATTTCTTGGGAGAGGAGGTTTTGGTGAAGTC 1080
Query 1082 TACAAAGGAACTCTCCCTCGGAGCAGAGAACTGAGAGAAGTAGCAGTGAAGCGAGTATCA 1141
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 TACAAAGGAACTCTCCCTCGGAGCAGAGAACTGAGAGAAGTAGCTGTGAAGCGAGTATCA 1140
Query 1142 CATGATGGTGAGCACGGTATGAAGCAATTTGTTGCTGAGATCGTGAGCATGAGGAGTTTA 1201
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CATGATGGTGAGCAGGGTATGAAGCAATTTGTTGCTGAGATCGTGAGCATGAGGAGTTTA 1200
Query 1202 AAACACCGGAGCTTGGTTCCACTTCTTGGGTATTGCAGGAGAAAACATGAGTTATTACTG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAACACCGGAGCTTGGTTCCACTTCTTGGGTATTGCAGGAGAAAACATGAGTTATTACTG 1260
Query 1262 GTGTCTGAGTACATGCCAAATGGTAGTCTTGACCATTACTTGTTTAATCATGATAGATTG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTGTCTGAGTACATGCCAAATGGTAGTCTTGACCATTACTTGTTTAATCATGATAGATTG 1320
Query 1322 TCTCTTCCCTGGTGGAGAAGACTTGCGATCCTTAGGGACATCGCATCAGCTCTTAGTTAC 1381
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1321 TCTCTTCCCTGGTGGAGAAGACTCGCGATCCTTAGAGACATCGCATCAGCTCTTAGTTAC 1380
Query 1382 TTACATACAGAAGCTGACCAAGTTGTTATACACAGAGACATCAAAGCTGCAAATGTTATG 1441
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 TTACATACAGAAGCTGACCAAGTTGTTATACACAGAGATATCAAAGCTGCAAATGTTATG 1440
Query 1442 TTGGATGCAGAGTTCAATGGAAGGTTGGGAGATTTTGGTATGTCCAGGTTATATGACAGA 1501
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1441 TTGGACGCAGAGTTCAATGGAAGGTTGGGTGATTTTGGTATGTCCAGGTTATATGACAGA 1500
Query 1502 GGGGCTGATCCAAGCACAACAGCTGCAGTGGGAACTGTTGGTTACATGGCACCTGAGCTT 1561
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1501 GGGGCTGATCCAAGTACAACAGCTGCAGTGGGAACTGTTGGTTACATGGCGCCTGAGCTT 1560
Query 1562 ACAACAATGGGAGCTTCTACTGGAACTGATGTGTACGCGTTTGGTGTTTTCTTGCTTGAA 1621
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1561 ACAACAATGGGAGCTTCCACTGGAACTGATGTGTATGCGTTTGGTGTTTTCTTGCTTGAA 1620
Query 1622 GTAACTTGTGGGAGGAGACCTGTGGAACCCGGCTTACCTGAAGCAAAACGTTTTCTGATC 1681
||||||||||||||||||||||||||||| || || |||| |||||||||| |||||||
Sbjct 1621 GTAACTTGTGGGAGGAGACCTGTGGAACCTGGATTGCCTGCTGCAAAACGTTATCTGATC 1680
Query 1682 AAATGGGTTAGTGAATGCTGGAAAAGGTCTTCTTTGATTGATGCTAGAGATCCAAGGTTG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 AAATGGGTTAGTGAATGCTGGAAAAGGTCTTCTTTGATTGATGCTAGAGATCCAAGGTTG 1740
Query 1742 ACAGAATTCTCATCCCAGGAAGTCGAGAAGGTTCTGAAACTCGGTTTGCTATGTGCAAAC 1801
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ACAGAATTCTCATCTCAGGAAGTCGAGAAGGTTCTGAAACTCGGTTTGCTATGTGCAAAC 1800
Query 1802 CTTGCTCCAGATTCAAGACCGGCCATGGAACAAGTGGTGCAATACTTAAATGGAAACCTA 1861
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1801 CTTGCTCCAGATTCAAGACCGGCCATGGAACAAGTGGTGCAATACTTAAACGGAAACCTA 1860
Query 1862 GCTTTACCCGAGTTTTGGCCCAATTCTCCAGGGATTGGAGTTCTGTCTCCAATGGCGCTT 1921
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1861 GCTTTGCCCGAGTTTTGGCCCAATTCTCCAGGGATTGGAGTTCTCAGTCCAATGGAGCTT 1920
Query 1922 TCCCCAGCACCACTCGTGATCCCTTCACTATCATTTTCGTCTTCCTCCTCCAACAACTCT 1981
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1921 TCGCCAGCACCACTCGTGATCCCTTCACTATCATTTTCGTCTTCCTCCTCCAACAGCTCT 1980
Query 1982 ATGTTTATTACTCACTCAGTCCTCTACGGGAGTGGGCGATGAAAGTTTCTAACAACTTCC 2041
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1981 ATGTTTATTACTCACTCAGTCCTCTACGGGAGTGGGCGAT-AAAGTTTCTAACAGCTTCC 2039
Query 2042 CTCTTCTTTGGCCTCTTAATATTGACTGATTTTCAGCCATTTCTAT-TCAGATTTTGTTT 2100
|||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||
Sbjct 2040 CTCTTCTTTGGCCTCTTATTATTGACTGATTTTCAGCCATTTCT-TCTCAAATTTTGTTT 2098
Query 2101 CATTAATGTATATGGTAGCACCATGTCCATTCTC--CAT--G-A--A-GCTTAGCTTGTA 2152
||| |||||||||| | |||||||||||||||| ||| | | | ||||||| ||||
Sbjct 2099 CATCAATGTATATGCTCGCACCATGTCCATTCTTGACATCTGCACTAAGCTTAGCGTGTA 2158
Query 2153 GAACGATT 2160
||||||||
Sbjct 2159 GAACGATT 2166
> Ahg950784 jgi|Araly1|950784|scaffold_802671.1
Length=1781
Score = 385 bits (208), Expect = 9e-106
Identities = 858/1153 (74%), Gaps = 119/1153 (10%)
Strand=Plus/Plus
Query 353 GCAGAAGCAACTCGATACTTCGGGATTTTCAA-----C-AGAAATGGTTCTACTTCCACA 406
|||||| ||||| ||||||| ||||||||||| | | |||||| ||| | || |
Sbjct 286 GCAGAATCAACTAGATACTTGGGGATTTTCAACGTGTCAAAAAATGGATCTCCCTCTTCT 345
Query 407 CGTGTG-TTGGCTGTAGAGCTTGACACT-TCTCTAGCTTCAGA-TGTGAAAGACATCAG- 462
| |||| || ||||| |||||||||||| | | | | | || | || |||| ||| |
Sbjct 346 CATGTGCTT-GCTGTTGAGCTTGACACTATTTGGAAC-CCGGATTTTG-AAGATATC-GA 401
Query 463 CGATAATCATGTTGGGATTGATGTGAACAG-CGCAGAGTC-TAT-TACATCTGCCAATGC 519
| | |||||||| ||||||||||||||||| | | ||| || | || || ||
Sbjct 402 CCACAATCATGTGGGGATTGATGTGAACAGTC-CTCTGTCGGATGGA-AT-AGCTTCGGC 458
Query 520 TTCTTATTTTTCAGACAAAGAAG-GGAAGAA-GATTGACATAAAACTCTTGAGTGGTGAT 577
||||| ||||| |||| | ||| ||||||| || | |||||| ||||||||||| |
Sbjct 459 ATCTTACTTTTCCGACATA-AAGCGGAAGAACGAAAG-CATAAACCTCTTGAGTGG-AAA 515
Query 578 CCTA-TCCAGGTTTGGGTGGACTATGAAGGAAC-A-ACGCTCAACGTTTC-ATTGGCTCC 633
|| | | ||||||||||| || |||||| | || | | |||||| ||||| | |||||||
Sbjct 516 CCCATTACAGGTTTGGGTTGATTATGAA-G-ACAATATGCTCAATGTTTCGA-TGGCTCC 572
Query 634 TCT-TAGAA-ACAAGAAACCAA---GC-CGACCTCTTTTGTCATCAACATCCATCAATCT 687
| | | ||| | |||| |||| || || |||||||||||| |||| ||||||||||
Sbjct 573 T-TGT-GAAGTCCAGAAGCCAAGTCGCTCG-CCTCTTTTGTCA-CAAC--CCATCAATCT 626
Query 688 AACTGATATTTT-GCAAGGTAGAAGAATGTTTGTTGGGTTTTCTGGC-TCAAC-CGGATC 744
| |||||||| ||| |||||| | ||||||||||| ||| || |||| ||| |
Sbjct 627 TTCAGATATTTTCCCAA-ACAGAAGACTTTTTGTTGGGTTCTCT-GCAGCAACAGGGA-C 683
Query 745 AAGC-ATGAGTTACCAGTACATACTCGGGTGGAGTTTCAGCAAAAGCATG-GCG-TCTCT 801
||| || ||||| || || || || ||||||||| |||| ||||| | | | || ||
Sbjct 684 -AGCTATCAGTTATCAATATATTCTTTCGTGGAGTTTTAGCACAAGCA-GAG-GATCACT 740
Query 802 GC--CGAACATTGACATCTCAAAACTTCCCAAAGTTCCTCACT-CTAGCA-CT-AA-A-A 854
|| || || |||||||||||| ||| || ||||||| || | |||| | || || | |
Sbjct 741 GCAGCG-AC-TTGACATCTCAAGACTACCTGAAGTTCCACA-TCCTAG-AGCTGAACATA 796
Query 855 AGAAGTCTACATCTCCTG-TGCTCAGTGTTCTGCTTGGTTTAATAGCTTTCATAGTTTTG 913
|||| || |||||| | || | | ||| ||||||||||| | ||| |||| | |||
Sbjct 797 AGAA-CCT--ATCTCC-GCTGTTTATTGTCCTGCTTGGTTTTCTGGCTATCATGGGCTTG 852
Query 914 GGGATTCTTGTTGTAGCT-TA-TTTGTATAGGAGAAACTTGTACT-CTGAAGTAAGAGAG 970
| | |||| || | | || ||| | |||||| | | ||| | | ||||||| ||
Sbjct 853 TGTACTCTTACTGGA-ATGTACTTT-TTTAGGAGGAGCAAGTA-TGCAGAAGTAACCGAA 909
Query 971 GAATGGGAAAAAGAGTATGGTCCA-ATTAGGTATTC-C-TACAAAT-CTCTATACAAAGC 1026
| ||||||||| || | |||| || | | | |||| | ||||||| || | ||||||||
Sbjct 910 GCATGGGAAAAGGAATTTGGTGCACA-T-CG-ATTCTCTTACAAATCCT-TGTACAAAGC 965
Query 1027 AACCAAAGGATTCAA-TAGGAGTGAATTTCTTGGGAGAGGAGGTTTTGGTGAAGTCTACA 1085
||| ||||| || || |||| || ||||||||| |||||||||||||| ||||||||||
Sbjct 966 AACAAAAGGGTTTAACAAGGA-TGGATTTCTTGGAAGAGGAGGTTTTGGAGAAGTCTACA 1024
Query 1086 AAGGAACTCTCCCTCGGAGCAGAGAACTGAGAGAAGTAGCAGTGAAGCGAGTATCACATG 1145
||||| ||| || | | ||| |||||| |||| |||||| || | |||||||
Sbjct 1025 GAGGAAATCT--CT--TTTC--A-AAC--AGAGAAATAGCTGTGAAGAGAATGTCACATG 1075
Query 1146 ATGGTGAGCACGGTATGAAGCAATTTGTTGCTG-AGATCGTGAGCATGAGGA-GTTTAAA 1203
| ||||| || ||| ||||||||||||| |||| || |||||||||||| || || | ||
Sbjct 1076 ACGGTGATCAAGGTGTGAAGCAATTTGTGGCTGAAG-TCGTGAGCATGA-GATGTCTGAA 1133
Query 1204 ACACCGG-AGCTTGGTTCCACTTCTTGGGTATTGCAGGAGAAAACATGAGTTA-TTACTG 1261
|||| || | ||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1134 ACACAGGAATCTT-GTTCCGCTTCTTGGGTATTGCAGGAGAAAACATGAGTTTCTT-CTT 1191
Query 1262 GTGTCTGAGTACATGCCAAATGGTAGTCTTGACCATTACTTGTTTAATCATGATAGATTG 1321
|| |||||||||||||| ||||||||||||||| | | |||||| || | | | | |
Sbjct 1192 GTCTCTGAGTACATGCCCAATGGTAGTCTTGACGAGCATTTGTTTGATGACCAGAAACCG 1251
Query 1322 -T-CTCTTCCCTGGTGGAGAA-GACTTGCGATCCTTA-GGGACATCGCAT--CAGCTCT- 1374
| || ||| ||| | | || |||||| ||| ||| ||| || |||| | || ||
Sbjct 1252 GTACT-TTCT-TGGCG-ACAAAGACTTGTGATTATTAAGGGT-ATTGCATATCTGCACTC 1307
Query 1375 TAGTTAC-TTACATACAGAAGCTGACCAAGTTGTTATACACAGAGACATCAAAGCTGCAA 1433
| ||||| || ||||||| || |||||||||||| | ||| |||| ||||||||| |||
Sbjct 1308 T-GTTACCTT-CATACAGGTGCGGACCAAGTTGTTCTGCACCGAGATATCAAAGCTTCAA 1365
Query 1434 ATGTTATGTTGGA 1446
| ||||||||||
Sbjct 1366 ACATTATGTTGGA 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86579126885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5