BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60280.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950782 jgi|Araly1|950782|scaffold_802669.1 3007 0.0
> Ahg950782 jgi|Araly1|950782|scaffold_802669.1
Length=2022
Score = 3007 bits (1628), Expect = 0.0
Identities = 1862/1977 (94%), Gaps = 8/1977 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCAGGATTGGATCTGATCTGGATGGTAATCTCCTTTCTTCTTCTGATTCATCTG 60
||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||| | |
Sbjct 23 ATGGCTCCAAGACTGGATCTGATCTGGATGGTGATCTCCTTTTTTCTTCTGATTCACCAG 82
Query 61 TCAAGTCAACAAGAAACTGGCTTCAGCTTCAACGGTTTTCGCCAGGGAGATCTTCATGTT 120
|||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||
Sbjct 83 TCAAGTCAACAAGAAACTGGATTCATCTTCAATGGTTTTCGCCAGGGAGATCTTCATGTT 142
Query 121 GATGGGGTTGCTCAAATCCTTCCCGGTGGACT-TCTGCGGCTGACTGACACTTCAGAGCA 179
|||||||||||||||||||| ||||||||||| | ||| |||||| |||||||||||||
Sbjct 143 GATGGGGTTGCTCAAATCCTCCCCGGTGGACTAT-TGCAGCTGACCAACACTTCAGAGCA 201
Query 180 GAAAAAGGGTCATGCTTTCTTCAGGCAGCCCTTAGTGTTCAATTCATCTGAACCTCTCTC 239
||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||| ||
Sbjct 202 GAAAATGGGTCATGCTTTCTTCAGGCAGCCCTTTGAGTTCAATTCATCTGAATCTCTGTC 261
Query 240 GTTCTCAACGCATTTCGTGTGTGCTATGGTGCGTAAACCGGGAGTTACCGGTGGAAATGG 299
|||||||| |||||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 262 ATTCTCAACACATTTCGTGTGTGCCATGGTGCGTAAACCAGGAGTTACAGGCGGAAATGG 321
Query 300 GATTGCTTTCTTTCTATCTCCTTCCATGGATCTTACAAACGCAGATGCAACTCAGTATTT 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 322 GATTGCTTTCTTTCTATCTCCTTCCATGGATCTTTCAAACGCAGATGCAACTCAGTATTT 381
Query 360 GGGTCTTTTCAACACCACAACCAACAGGTCTCCCTCATCTCATATCTTTGCTATTGAGCT 419
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 382 GGGCCTTTTCAACACCACAACCAACAGATCTCCCTCATCTCATATCTTTGCTATTGAGCT 441
Query 420 TGATACTGTTCAAAGTGCAGAATTTGATGACATCGATAACAATCATGTTGGTATCGACGT 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 442 TGATACTGTTCAAAGTGCAGGATTTGATGACATCGATAACAATCATGTTGGTATCGATGT 501
Query 480 GAACAGCCTAACCTCTGTTGAATCTGCTCCGGCTTCTTACTTTTCAGACAAAAAAGGTCT 539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 502 GAACAGCCTAACCTCTGTCGAATCTGCTCCGGCTTCTTACTTTTCAGACAAAAAGGGTCT 561
Query 540 CAATAAGAGCATAAGTCTCTTGAGTGGAGATTCAATCCAGGTCTGGGTGGACTTTGATGG 599
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CAACAAAAGCATAAGTCTCTTGAGTGGAGATTCAATCCAGGTCTGGGTGGACTTTGATGG 621
Query 600 AACTGTACTAAACGTTTCATTGGCGCCTCTAGGGATTCGGAAGCCAAGTCAAAGTCTTAT 659
|||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||| |
Sbjct 622 AACTGTACTAAACGTTTCATTGGCACCTCTTGGGATTCAGAAGCCAAGTCAGAGTCTTTT 681
Query 660 ATCAAGATCCATGAATCTTTCAGAAGTTATCCAGGATAGAATGTTTGTCGGATTCTCTGC 719
|||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 682 ATCAAGGTCCATCAACCTTTCAGAAGTTATCCAGGATAGAATGTTTGTTAGATTCTCTGC 741
Query 720 AGCAACAGGACAATTGGCTAATAACCATTACATACTCGGTTGGAGTTTCAGCAGAAGCAA 779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AGCAACAGGACAATTGGCAAATAACCATTACATACTCGGTTGGAGTTTCAGCAGAAGCAA 801
Query 780 GGCATCGTTACAGAGCCTAGACATCTCAAAACTTCCCCAAGTTCCTCATCCTAAAATGAA 839
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 802 GGCATCATTACAGAGCCTGGACATCTCAAAACTTCCCCAAGTTCCTCATCCTAAAAAGAA 861
Query 840 AACTTCTCTCCTGCTGATTCTTCTGTTGATTGTACTTGGAATCATACTCTTGGTACTCCT 899
| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 862 ACCTTCTCTCGTGCTGATTCTTCTGTTGATTGTGCTTGGAATCATACTCTTGGTACTTAT 921
Query 900 GGTAGGAGCTTATCTATACAGAAGAAACAAGTATGCAGAAGTAAGAGAGGAATGGGAAAA 959
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 922 GGGAGGAGCTTATTTATACAGAAGAAACAAGTATGCAGAAGTAAGAGAGGAATGGGAGAA 981
Query 960 AGAGTATGGTCCACACCGATACTCTTACAAATCCCTGTACAAAGCAACAAAAGGATTCCA 1019
|||||||||||||||| ||||||| |||||| || ||||||| |||||||||||||||||
Sbjct 982 AGAGTATGGTCCACACAGATACTCCTACAAAGCCATGTACAAGGCAACAAAAGGATTCCA 1041
Query 1020 CAAAGATGGTTTTCTTGGTAAAGGAGGATTCGGAGAAGTCTACAAAGGAACTCTACCTCA 1079
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1042 CAAAGATGGTTTTCTTGGAAAAGGAGGATTCGGAGAAGTCTACAAAGGAACTCTACCTGA 1101
Query 1080 -G--GAAGACATAGCTGTGAAAAGATTTTCCCATCATGGAGAACGAGGGATGAAGCAATT 1136
| | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1102 TGAAGGAGATATAGCTGTGAAAAGATTTTCCCATGATGGAGAACGAGGGATGAAGCAATT 1161
Query 1137 CGTAGCTGAAATTGCAAGCATGGGTTGCTTAGACCACAGGAACTTGGTTCCACTTTTCGG 1196
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1162 CGTGGCTGAAATCGCAAGCATGGGTTGCTTAGATCACAGGAACTTGGTTCCACTTTTCGG 1221
Query 1197 ATACTGCAGGCGAAAAGGCGAGTTTCTTCTCGTCTCCAAGTACATGCCTAATGGAAGTCT 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GTACTGCAGGCGAAAAGGCGAGTTTCTTCTCGTCTCCAAGTACATGCCTAATGGAAGTCT 1281
Query 1257 TGACCAGTTCTTGTTTCATAACAGAGAACCATCTCTTACTTGGTCCAAAAGGCTAGGGAT 1316
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1282 TGACCAGTTCTTGTTTCATAACAGAGAACCATATCTTACTTGGTTTAAAAGGCTAGGGAT 1341
Query 1317 TCTAAAGGGTATAGCTTCAGCTCTTAAATACTTACACACAGAAGCTACACAAGTTGTTCT 1376
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1342 TCTAAAGGGTATAGCTTCAGCTCTAAAATACTTGCACACAGAAGCTACACAAGTTGTTCT 1401
Query 1377 ACACAGAGATATCAAAGCTTCTAATGTAATGTTAGACACAGACTTCACAGGAAAGTTAGG 1436
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1402 ACACAGAGATATCAAAGCTTCAAATGTAATGTTGGACACAGACTTCACTGGAAAGTTAGG 1461
Query 1437 AGATTTTGGTATGGCTAGGTTTCATGACCATGGAGCAAATCCAACAACAACAGGAGCTGT 1496
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1462 AGATTTTGGTATGGCTAGGTTTCATGACCATGGAGCTAATCCAACAACAACAGGAGCTGT 1521
Query 1497 TGGAACAGTAGGATACATGGGACCTGAGCTAACATCAATGGGAGCTTCAACTAAAACCGA 1556
|| || ||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1522 GGGCACTGTAGGATACATGGCACCAGAGCTAACAGCAATGGGAGCTTCAACTAAAACAGA 1581
Query 1557 TGTATACGCATTTGGTGCATTGATCCTTGAAGTAACTTGTGGGAGAAGACCTGTAGAACC 1616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1582 TGTATACGCATTTGGTGCATTGATTCTTGAAGTAACTTGTGGGAGAAGACCTGTAGAACC 1641
Query 1617 TAATCTGCCGATTGAGAAACAGCTTCTGGTGAAATGGGTTTGTGATTGCTGGAAAAGGAA 1676
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1642 TAATCTTCCGATTGAGAAACAACTTCTGGTGAAATGGGTTTGTGATTGCTGGAGAAGGAA 1701
Query 1677 AGATTTAATCAGTGCTCGAGATCCCAAACTGAGTGGAGAATTGATACCTCAAATCGAGAT 1736
|| |||||| |||||||||||||||| | |||||| ||| ||||||||| ||||||||||
Sbjct 1702 AGCTTTAATTAGTGCTCGAGATCCCAGATTGAGTGAAGACTTGATACCTGAAATCGAGAT 1761
Query 1737 GGTATTGAAATTAGGGTTGCTTTGCACGAATCTTGTGCCGGAATCGAGACCTGACATGGT 1796
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1762 GGTATTGAAATTAGGGTTGCTGTGCACGAATCTTGTGCCGGAATCGAGACCTGAGATGGT 1821
Query 1797 AAAAGTTGTGCAGTACCTTGACAGACAGGTTTCGTTGCCGGATTTCTCACCAGATTCACC 1856
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1822 AAAAGTTGTGCAGTACCTTGATGGACAGGTTTCGTTGCCGGATTTCTCACCAGATTCACC 1881
Query 1857 GGGAATTGGGATTGTTACTCCGGTTTTGGTCGGAGGAAGCTCCACCGTGATCTCTAACAT 1916
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 GGGAATTGGGATTCTTACTCCGGTTTTGGTCGGAGGAAGCTCCACCGTGATCTCTAACAA 1941
Query 1917 TTCTTCTCCGGTGACTGA---GTTTATTACTCACTCGATTCAATACGGAATTGGACG 1970
|||||| |||| |||| | |||||||||||||||||| ||||||||| |||||||
Sbjct 1942 TTCTTCACCGGAGACTCATCAGTTTATTACTCACTCGATCCAATACGGAGTTGGACG 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5