BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60360.3
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496172 jgi|Araly1|496172|fgenesh2_kg.8__1988__AT5G60360.3 2080 0.0
> Ahg496172 jgi|Araly1|496172|fgenesh2_kg.8__1988__AT5G60360.3
Length=1426
Score = 2080 bits (1126), Expect = 0.0
Identities = 1349/1452 (93%), Gaps = 34/1452 (2%)
Strand=Plus/Plus
Query 1 GATAACGTTTCCGTCTGTAtctctctcttccgtcttctactcttcttcttcttcttcttc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATAACGTTCCCGTCTGTATCTCTCTCTTCCGTCTTCTACTCTTCTTCTTCTTCTTCTTC 60
Query 61 ttcCACTCACAATCTATCG-AGCTAAAACACTGAAGCAGACATTAGCGTTGAGaaaaaaa 119
|| | || | | | | ||| | | | | ||| | || | | ||| ||| ||
Sbjct 61 TT--A---AC-A-C--T-GAAGC--AGATA-T-AAG-A-AC--T---G-AGAG-AAACAA 97
Query 120 aaaaaGTAAGAACGAGAGAGAGAAAGCCATGTCTGCGAAAACAATCCTATCATCAGTAGT 179
| ||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 98 ACTAAGTAAGAACGCGAGAGAGAAAACCATGTCTGCCAAAACAATCCTATCATCACTAGT 157
Query 180 TTTGGTGGTTCTCGTCGCCGCATCAGCAGCGGCTAATATCGGATTCGATGAGTCAAACCC 239
| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 158 TCTGGTCATTCTCATCGCCGCATCAGCAGCGGCGGATATCGGATTCGATGAGTCAAACCC 217
Query 240 GATCCGAATGGTCTCCGATGGTCTCCGGGAGGTAGAAGAATCTGTTTCCCAGATCTTAGG 299
|||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 218 GATCCGAATGGTTTCCGATGGCCTTCGGGAGGTAGAAGAAACTGTTTCCCAGATCTTAGG 277
Query 300 TCAATCTCGTCACGTTCTCTCTTTCGCTCGCTTCACTCACCGATATGGTAAAAAGTATCA 359
||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 278 TCAATCTCGCCACGTTCTCTCCTTCGCTCGCTTCACTCACCGGTATGGGAAAAAGTATCA 337
Query 360 GAACGTGGAGGAGATGAAGCTTCGATTCTCGATTTTCAAGGAGAATCTTGATTTGATCAG 419
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 338 GAACGTGGAGGAGATGAAGCTTCGATTCTCGATTTTCAAAGAGAATCTGGATTTGATCAG 397
Query 420 ATCCACCAACAAGAAAGGCTTATCTTACAAACTCGGTGTTAATCAATTTGCTGATTTGAC 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 ATCCACTAACAAGAAAGGCTTATCTTACAAACTCGGTGTTAATCAATTTGCTGATTTGAC 457
Query 480 ATGGCAAGAGTTTCAAAGGACCAAGCTTGGTGCTGCTCAGAACTGCTCTGCCACTTTAAA 539
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 458 CTGGCAAGAGTTCCAAAGGACCAAGCTTGGTGCTGCTCAAAACTGCTCTGCCACGTTAAA 517
Query 540 GGGCAGCCACAAGGTCACAGAAGCAGCTCTTCCTGAAACAAAAGACTGGAGAGAAGATGG 599
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 518 GGGCAGCCACAAACTCACAGAAGCAGCTCTTCCGGAAACGAAAGACTGGAGAGAAGATGG 577
Query 600 TATCGTTAGTCCGGTCAAAGATCAGGGAGGTTGTGGATCTTGCTGGACATTCAGCACAAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TATCGTTAGTCCGGTCAAAGATCAGGGAGGTTGTGGATCTTGCTGGACATTCAGCACAAC 637
Query 660 TGGAGCTCTTGAGGCAGCTTACCATCAGGCATTTGGAAAAGGAATTTCTCTCTCTGAGCA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 638 TGGAGCTCTTGAGGCAGCTTACCATCAGGCATTTGGAAAAGGAATATCTCTCTCTGAGCA 697
Query 720 ACAGCTTGTGGATTGTGCTGGAGCTT-TCAATAACTATGGTTGCAATGGTGGCCTTCCTT 778
|||||| ||||| ||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 698 ACAGCTCGTGGACTGTGCTGGAGCTTAT-AATAACTATGGCTGCAATGGTGGCCTTCCTT 756
Query 779 CTCAAGCCTTTGAATACATCAAATCCAACGGTGGCCTCGACACAGAGAAAGCTTATCCTT 838
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 CTCAAGCCTTTGAATACATCAAATCCAACGGTGGCCTCGACACAGAGGAAGCTTATCCTT 816
Query 839 ATACCGGTAAAGATGAAACCTGCAAATTTTCAGCTGAAAACGTTGGTGTACAAGTCCTCA 898
| | ||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 817 ACATCGGGAAAGATGGAACCTGCAAATTTTCAGCAGAAAATGTTGGTGTACAAGTCCTCG 876
Query 899 ACTCAGTCAACATTACTCTGGGTGCTGAAGATGAACTGAAGCATGCGGTTGGATTGGTAC 958
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 877 ACTCAGTCAACATTACTCTGGGTGCTGAAGATGAATTGAAGCATGCGGTTGGATTGGTAC 936
Query 959 GGCCAGTAAGCATAGCATTTGAGGTTATACACTCGTTCCGGCTTTACAAGAGTGGAGTTT 1018
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 937 GACCAGTAAGCATAGCATTCGAGGTTATACACTCGTTCCGGCTTTACAAGAGTGGAATTT 996
Query 1019 ACACTGATAGTCACTGTGGAAGTACTCCAATGGATGTGAACCACGCGGTTTTGGCCGTTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 997 ACACTGATAGTCACTGTGGAAGTACTCCAATGGATGTGAACCACGCGGTTTTGGCGGTTG 1056
Query 1079 GTTATGGAGTTGAAGACGGTGTACCATATTGGCTTATTAAGAACTCATGGGGAGCGGATT 1138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1057 GTTATGGAGTTGAAGACGGTGTACCGTATTGGCTTATTAAGAACTCATGGGGAGCGGATT 1116
Query 1139 GGGGCGACAAAGGTTACTTCAAGATGGAGATGGGGAAGAACATGTGTGGTAAGTATTGCT 1198
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GGGGCGACAAAGGCTACTTCAAGATGGAGATGGGGAAGAACATGTGTGGTAAGTATTGCT 1176
Query 1199 ACATGTGCATCATACCCCGTTGTGGCTTGAGATGATCA---GCGAATGTGGTTGGTCAAT 1255
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 ACATGTGCATCGTACCCCGTTGTGGCTTGAGATGATCAACAGCGAATGTGGTTGGTCAAT 1236
Query 1256 TATCAAATTACGAAA-TGTTCACGTATTTATTGGATTAAGACATTACGTAA-AAGTTGGG 1313
||||||||||||||| ||||| | ||||||||||||||||||||||| | ||||||||
Sbjct 1237 TATCAAATTACGAAAATGTTCGCATATTTATTGGATTAAGACATTACTTTTTAAGTTGGG 1296
Query 1314 -ACTTGGGAATGCATATGGTTTATGCTTGTTGTAACATAAAAAGGTCTGTTAATATGTAC 1372
|||||||||||||||| ||||||||||||||||| ||||| ||| |||| ||||||||
Sbjct 1297 GACTTGGGAATGCATATTGTTTATGCTTGTTGTAATATAAA--GGTATGTTCATATGTAC 1354
Query 1373 AAAATAAAGCCAAAACTATAGACGACAAATTTATAATATTTTCATGTTAAATTTATGAAC 1432
||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||
Sbjct 1355 AAAATAAAGCCAAAACTATAGACGATAAATTTATATTATTTGCATGTTAAATTTAAGAAC 1414
Query 1433 ATAAATTGATTT 1444
||||||||||||
Sbjct 1415 ATAAATTGATTT 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5