BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60450.1 Length=3114 Score E Sequences producing significant alignments: (Bits) Value Ahg496192 jgi|Araly1|496192|fgenesh2_kg.8__2008__AT5G60450.1 3895 0.0 Ahg906919 jgi|Araly1|906919|Al_scaffold_0003_4047 388 1e-106 > Ahg496192 jgi|Araly1|496192|fgenesh2_kg.8__2008__AT5G60450.1 Length=3035 Score = 3895 bits (2109), Expect = 0.0 Identities = 2494/2669 (93%), Gaps = 70/2669 (3%) Strand=Plus/Plus Query 328 TTTGCCTCTTCTTTGTGAAATTTAGC-TGAAAAAGGAGAGGAATTCCGAATTCTGTCACT 386 ||||| |||||||||||||||||| | || ||||||||| |||||| ||||||||||||| Sbjct 279 TTTGCTTCTTCTTTGTGAAATTTA-CTTG-AAAAGGAGAAGAATTCTGAATTCTGTCACT 336 Query 387 TCAAAGCTCGAATTTTGCAAACTTTCCTTTGATGGGTTTTACTTGTTTTGTTGTAATCTG 446 || |||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 337 TC-AAGCTCAAATTTTGCCAACTTTCCTTTGATGGGTTTTACTTGTTTTGTTGTAATTTG 395 Query 447 ATTAAAAATAGAAACTTTTTG--TTTTCTTCTTGTCTCCTTTTGCT-CTTAAAAGAGAAG 503 ||||||||||||||||||||| |||| ||||| ||| ||| | || ||| Sbjct 396 ATTAAAAATAGAAACTTTTTGTTTTTTTTTCTT-TCTTCTTGT-CTCCTT---------- 443 Query 504 CTTTTTCAATGGAATTTGACTTGAATACTGAGATTGCggaggtggaagaggaggagaatg 563 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 444 -TTTTTCAATGGAATTTGACTTGAATACTGAGATTGCGGAGGTGGAAGAGGAAGAGAATG 502 Query 564 atgatgtaggagtaggagtaggaggaggaACAAGAATTGACAAGGGTAGGCTTGGAATTT 623 |||| | |||||||| |||||||||||||||| ||| ||||||||||||||||| Sbjct 503 ATGA--T----GTAGGAGT---AGGAGGAACAAGAATTAACAGGGGTAGGCTTGGAATTT 553 Query 624 CACCATCTTCTTCTTCTTCATGCTCTTCCGGATCATCATCGTCATCATCTTCTACAGGCT 683 |||| || ||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 554 CACCGTCCTCTTCTTCTTCATGCTCTTCCGG---ATCA---TCATCATCTTCTACAGGCC 607 Query 684 CTGCATCTTCCATTTACTCTGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACTTGTCTTC 743 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 608 CTGCATCTTCCATTTACTCTGAGCTGTGGCATGCTTGTGCTGGTCCTCTCACTTGTCTTC 667 Query 744 CCAAGAAAGGCAATGTAGTTGTCTATTTCCCTCAAGGTCATTTGGAGCAAGATGCTATGG 803 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 668 CCAAGAAAGGCAATGTAGTTGTCTATTTCCCACAAGGTCATTTGGAGCAAGATGCTATGG 727 Query 804 TTTCATATTCGTCTCCTCTTGAAATCCCCAAATTTGACCTTAATCCCCAAATCGTCTGCA 863 |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 728 TTTCTTATTCTTCTCCTCTTGAAATCCCCAAATTTGACCTTAATCCCCAAATCTTCTGCA 787 Query 864 GGGTGGTTAATGTCCAGTTGCTTGCTAATAAGGACACCGATGAGGTCTACACTCAAGTCA 923 |||||||| ||||||| |||||||| |||||||| || |||||||| ||||||||||||| Sbjct 788 GGGTGGTTCATGTCCAATTGCTTGCCAATAAGGAAACTGATGAGGTTTACACTCAAGTCA 847 Query 924 CTCTGCTTCCACTTCAAGAGTTTTCGATGCTAAATGGGGAGGGGAAAGAGGTCAAGGAGT 983 ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 848 CTCTGCTTCCACTCCAAGAGTTTTCGATGCTAAATACGGAGGGGAAAGAGGTCAAGGAGT 907 Query 984 TAGGAGGGGAGGAAGAGAGGAACGGAAGCTCATCCGTCAAGCGGACACCTCATATGTTCT 1043 |||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||||| Sbjct 908 TAGGAGGGGACGAAGAGAGGAACGGAAGCTCATCTGTCAAACGAACACCGCATATGTTCT 967 Query 1044 GTAAAACCTTAACAGCGTCTGACACAAGCACACATGGAGGCTTCTCTGTACCTAGAAGAG 1103 | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 968 GCAAAACCTTAACAGCTTCTGACACAAGCACCCATGGAGGCTTCTCTGTACCTAGAAGAG 1027 Query 1104 CCGCTGAAGATTGTTTTGCTCCTCTTGACTACAAACAACAGAGGCCATCTCAAGAGCTCA 1163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1028 CCGCTGAAGATTGTTTTGCTCCTCTTGACTACAAACAACAGAGGCCATCTCAAGAGCTCA 1087 Query 1164 TTGCAAAGGACCTCCATGGAGTAGAGTGGAAGTTTCGCCATATCTATAGAGGTCAACCAA 1223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 TTGCAAAGGACCTCCATGGAGTAGAGTGGAAGTTTCGCCATATCTATAGAGGTCAACCAA 1147 Query 1224 GGAGGCATCTACTCACCACTGGTTGGAGTATCTTTGTCAGTCAAAAGAATCTCGTCTCTG 1283 ||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||| Sbjct 1148 GGAGGCATCTACTCACCACTGGTTGGAGTATATTTGTTAGTCAAAAGAATCTAGCCTCTG 1207 Query 1284 GTGATGCGGTTCTCTTTCTGAGAGACGAAGGAGGAGAGCTGAGATTAGGAATCAGAAGAG 1343 ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1208 GTGATGCCGTTCTCTTTCTGAGAGACGAAGGTGGAGAGCTGAGATTAGGAATAAGAAGAG 1267 Query 1344 CAGCACGGCCAAGAAATGGACTTCCTGACTCAATCATTGAGAAGAATTCATGTTCAAACA 1403 ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1268 CAGCAAGGCCAAGAAATGGACTTCCTGACTCAATCATTGAGAAGAACTCATGTTCGAACA 1327 Query 1404 TTCTGTCTCTTGTGGCTAATGCTGTATCTACAAAAAGCATGTTTCATGTGTTCTACAGTC 1463 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1328 TTCTGTCTCTTGTGGCTAATGCTGTATCTACAAAAAGCATGTTTCATGTGTTTTACAGTC 1387 Query 1464 CACGAGCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGA 1523 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1388 CACGAGCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATGTCACAAGCATCAGGA 1447 Query 1524 GTCCTGTTTGCATAGGCACAAGATTTAGAATGCGATTTGAAATGGACGATTCTCCTGAGA 1583 ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1448 ATCCCATTTGCATAGGCACAAGATTCAGAATGCGATTTGAAATGGACGACTCTCCTGAGA 1507 Query 1584 GAAGATGCGCTGGTGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACT 1643 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1508 GAAGATGCGCTGGAGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACT 1567 Query 1644 CTAAATGGAGGTGCTTGTTGGTGCGATGGGATGAGTCTTTTGTGAGTGATCATCAAGAAA 1703 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1568 CTAAATGGAGGTGCTTGTTGGTGCGATGGGATGAGTCATTTGTGAGTGATCATCAAGAAA 1627 Query 1704 GAGTTTCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTGAGCATTCAGTCAT 1763 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1628 GAGTTTCACCTTGGGAGATTGATCCCTCGATTTCTCTCCCACACTTAAGCATTCAGTCAT 1687 Query 1764 CTCCAAGGCCTAAAAGGCCATGGGCAGGTTTACTGGATACTACCCCACCCGGAAACCCCA 1823 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1688 CTCCAAGGCCTAAAAGGCCGTGGGCAGGTTTACTGGATACTACTCCACCCGGAAACCCCA 1747 Query 1824 TAACAAAAAGGGGTGGTTTTTTGGACTTTGAGGAGTCGGTTAGACCCTCTAAGGTCTTGC 1883 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1748 TAACCGAAAGGGGTGGTTTTTTGGACTTTGAGGAGTCGGTTAGACCCTCTAAGGTCTTGC 1807 Query 1884 AAGGTCAAGAAAATATAGGTTCTGCATCACCCTCACAGGGGTTTGATGTTATGAACCGCC 1943 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1808 AAGGTCAAGAAAATTTAGGTTCTGCATCACCCTCACAGGGGTTTGATGTTATGAACCGCC 1867 Query 1944 GGATACTGGATTTTGCGATGCAGTCTCATGCAAATCCAGTTCTTGTGTCGAGTAGAGTCA 2003 ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| | Sbjct 1868 AGATACTGGATTTTGCGATGCAGTCTCACGCAAGTCCAGTTCTTTTGTCGAGTAGAGTGA 1927 Query 2004 AGGATCGATTTGGTGAGTTTGTAGATGCTACTGGCGTGAACCCAGCTTGTTCAGGTGTTA 2063 ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| Sbjct 1928 AGGATCGATTTGGTGAGTTTGTAAATGCTACTGCCCTGAACCCAGCTTGTTCAGGTGTTA 1987 Query 2064 TGGACCTGGATAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATTTGCTCGCTTAAATCAT 2123 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1988 TGGACCTGGACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATTTGCTCGCTTAAATCAT 2047 Query 2124 TCCCGCAATTTGCTGGTTTCAGTCCAGCTGCTGCT-C-------C----T-----A-AT- 2164 ||||||||||||||||||||||||||||||||||| | | | | || Sbjct 2048 TCCCGCAATTTGCTGGTTTCAGTCCAGCTGCTGCTTCAGGTAAACCAAATCTTGGATATA 2107 Query 2165 C----CC-TTTGCTTACCAAGCCAACAAGTCAAGTTACTATCCGCTAGCTTTGCATGGGA 2219 | || ||||| |||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 2108 CTGATCCCTTTGCGTACCAAGCCAACAAGTCAAGTTTCTATCCGCTAGCTTTACATGGGA 2167 Query 2220 TTAGGAGCACTCATGTTCCGTATCAGAATCCATACAATGCGGGAAACCAATCCTCGGGTC 2279 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 2168 TTAGGAGCACTCATGTTCCATATCAGAATCCATACAATGCGGGAAATCAATCCTCGGGTC 2227 Query 2280 CCCCTTCACGTGCAATAAACTTTGGTGAAGAGACTAGAAAGTTTGATGCACAAAATGAAG 2339 |||||| | |||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 2228 ACCCTTCTCCTGCAATAAACGTTGGTGAAGAGACTAGAAAGTTTGATGCACAAAATGGAG 2287 Query 2340 GTGGCCTACCAAATAATGTTACAGCTGATTTGCCATTCAAGATTGATATGATGGGAAAAC 2399 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2288 GTGGCCTACCGAATAATGTTACCGCTGATTTGCCATTCAAGATTGATATGATGGGAAAAC 2347 Query 2400 AGAAAGGCAGTGAGTTGAATATGAATGCTTCATCAGGATGTAAACTTTTCGGATTCTCCT 2459 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2348 AGAAAGGCAGTGACTTTAATATGAATGCTTCATCAGGATGTAAACTTTTCGGATTCTCCT 2407 Query 2460 TACCAGTGGAGACACCTGCATCTAAGCCGCAAAGCTCGAGCAAAAGAATCTGTACAAAGG 2519 |||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct 2408 TACCCGTGGAGACACCTGCATCTAACCCGCAAAGCTCGAGCAAAAGGATATGTACAAAGG 2467 Query 2520 TTCACAAGCAAGGAAGCCAAGTGGGGAGAGCTATTGATTTGTCGCGACTTAACGGGTATG 2579 |||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||| Sbjct 2468 TTCACAAGCAAGGAAGCCAAGTGGGGAGAGCTATTGATTTATCCCGACTAAACGGTTATG 2527 Query 2580 ATGATCTCCTTATGGAGCTTGAACGGCTGTTCAACATGGAAGGGCTTCTCAGGGATCCTG 2639 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2528 ATGATCTCCTTACCGAGCTTGAACGGCTGTTCAACATGGAAGGGCTTCTCAGGGATCCTG 2587 Query 2640 AAAAAGGATGGAGGATCTTATATACTGATAGTGAGAACGATATGATGGTCGTTGGCGATG 2699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2588 AAAAAGGATGGAGGATCTTATATACTGATAGTGAGAACGATATGATGGTCGTTGGCGATG 2647 Query 2700 ATCCATGGCATGATTTCTGCAATGTGGTGTGGAAGATACACTTATACACGAAAGAGGAAG 2759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2648 ATCCATGGCATGATTTCTGCAATGTGGTGTGGAAGATACACTTATACACGAAAGAGGAAG 2707 Query 2760 TGGAGAATGCGAATGACGATAACAAGAGTTGTTTAGAGCAAGCTGCTCTCATGATGGAAG 2819 |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| Sbjct 2708 TGGAGAATGCGAATGATGATAACAAGAGTTGTTTAGAACAAGCTGCTATCATGATGGAAG 2767 Query 2820 CATCAAAGTCATCTTCTGTGAGCCAGCCTGATTCTTCTCCTACAATCACTAGGGTTTGAT 2879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2768 CATCAAAGTCATCTTCTGTGAGCCAGCCTGATTCTTCTCCTACAATCACTAGGGTTTGAT 2827 Query 2880 A----C--CC-AT-AAAGAAGCTTATTTCCT-ATGTT-TTAAAGTGTGTTTTGCTCACAA 2929 | | || | |||||||||||||| || ||||| || |||||||||||||| |||| Sbjct 2828 AAAAACAACCCAAGAAAGAAGCTTATTTTCTTATGTTCTTTAAGTGTGTTTTGCTGACAA 2887 Query 2930 AAGAACTTCAACTTTATCTTT-GTCTTTG 2957 |||||||||| |||||||||| || |||| Sbjct 2888 AAGAACTTCATCTTTATCTTTTGTGTTTG 2916 Score = 324 bits (175), Expect = 3e-87 Identities = 244/273 (89%), Gaps = 21/273 (8%) Strand=Plus/Plus Query 4 GAAAGGGAGAGTGTAGGTGTGGGTTCTGTTCTGTCTTGGCTTTGTCTCCCCCGCTTAtct 63 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAAGAGAGAGTGTAGGTGTGGGTTCTGTTCTGTCTTGGCTTTGTCTCCCCCGCTTA--- 57 Query 64 ctccctctctttctctctctctctctctTTCCACTAAATTGttttttttttGCTCTTT-A 122 || |||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 58 -------TC--TCTCTCTCTCTCTCTC--TCCACTAAATTGTTTTTTTTTTGCTCTTTAA 106 Query 123 AAAAGTATAtttttttCCAATCTGCAAA-TTTTAGTCTATGTCTGTT-C--CTTGTGCTC 178 |||||||||||||||||||||||| ||| ||||| ||| |||||||| | ||| ||||| Sbjct 107 AAAAGTATATTTTTTTCCAATCTGTAAATTTTTA-TCTCTGTCTGTTCCTTCTTCTGCTC 165 Query 179 CCTCTTCTCAGTACCTGCAAATGGAGGAAGAAGAATCCTTCTCTGAAACCCTTGTTCTCA 238 |||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||| Sbjct 166 CCTCTTCTCAGTACCTGCAAATGGAGGAGGAAGAATCATACTTTGAAACCCTTGTTCTCA 225 Query 239 TTTGATTCCTCCTTCctctctcttcttctctct 271 |||||||||||||||||||||||| |||||||| Sbjct 226 TTTGATTCCTCCTTCCTCTCTCTT-TTCTCTCT 257 > Ahg906919 jgi|Araly1|906919|Al_scaffold_0003_4047 Length=651 Score = 388 bits (210), Expect = 1e-106 Identities = 277/306 (91%), Gaps = 18/306 (6%) Strand=Plus/Plus Query 1469 GCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGAGTCCT 1528 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 289 GCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGAATCCC 348 Query 1529 GTTTGCATAGGCACAAGATTTAGAATGCGATTTGAAATGGACGATTCTCCTGAGAGAAGA 1588 ||||||||||||||||||| | |||||||||||||||| |||| |||||||||||| Sbjct 349 ATTTGCATAGGCACAAGATTCATAATGCGATTTGAAATGAACGACTCTCCTGAGAGA--- 405 Query 1589 TGCGCTGGTGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACTCTAAA 1648 ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 406 TGCGCTGGTGTAGTGGCTGGAGTCTATGACTTGGACCCATATAGGTGGCCAAACTCTAAA 465 Query 1649 TGGAGGTGCTTGTTGGTGCGATGGGATGAGTCTTTTGTGAGTGATCATCAAGAAAGAGTT 1708 ||| ||| | |||||||||||||| |||||||||||||||||||||||| Sbjct 466 TGG---TGC--G--------ATGGGATGAGTCTT--GTGAGTGATCATCAAGAAAGAGTT 510 Query 1709 TCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTGAGCATTCAGTCATCTCCA 1768 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 511 TCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTAAGCATTCAGTCATCTCCA 570 Query 1769 AGGCCT 1774 |||||| Sbjct 571 AGGCCT 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117622676560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5