BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60580.2
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496205 jgi|Araly1|496205|fgenesh2_kg.8__2021__AT5G60580.4 2597 0.0
Ahg932853 jgi|Araly1|932853|scaffold_400841.1 254 2e-66
> Ahg496205 jgi|Araly1|496205|fgenesh2_kg.8__2021__AT5G60580.4
Length=1884
Score = 2597 bits (1406), Expect = 0.0
Identities = 1627/1726 (94%), Gaps = 45/1726 (3%)
Strand=Plus/Plus
Query 131 GATGGCTACTGAAGAGAAGCCTCTTAATTCTCTTGATTTAAGCCATGATGATTCTTCCCC 190
||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 202 GATGGGTACTGAAGAGAAGCCTCTTAATTCTCTTGATTCAAGTCATGGTGATTCTTCCCC 261
Query 191 TGCTTCAAATCAGGCTGAAGGATCATCTGCTATAACTGAAGACACTTCTGCGAATGTTCA 250
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 262 TGCTTCAAATCAGGCTGAAGGATCATCTGCTATAACAGAAGAGACTTCTGCAAATGTTCA 321
Query 251 ACAATGGAGGCGAAAGAATCTCTCTTTACAGATACCCTCTAGAGCAGCTGGTCTCTCTCC 310
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ACAATGGAGGCGAAAGAACCTCTCTTTACAGATACCCTCTAGAGCAGCTGGTCTCTCTCC 381
Query 311 TGAAGATTCGGTTGTTATCAAAATGCCTCCAACGCCTAGTCCAACTCCAAGAAGAGTCAA 370
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 382 TGAAGATTCGGTTGTTATCAAAATGCCTCCAACGCCTAGTCCAACTCCGAGAAGAGTCAA 441
Query 371 CTTTGCTTTGACTTCGAGTTCTCCAGGTCCTACTCCTACTTCTTCTTCTGTTCTTCCTCG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 442 CTTTGCTTTGACTTCGAGTTCTCCAGGTCCTACTCCTACTTCTTCTTCTGTTCTTCCGCG 501
Query 431 TGGCAAATCGTCCCTGAAGAATCTATTGCCAAAAGCTGGGTGTAAACCAAAAACCTCTAA 490
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 502 TGGCAAATCGTCCTTGAAGAATCTATTGCCAAAAGCTGGGTGTAAACCAAAAATCTCTAA 561
Query 491 CACTGATATCGAGAAGGGACAAGGGAATGCCTGTTCTCCTCCTGCATCGCAGGAGAAGGC 550
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 562 CACCGATATCGAGAAGGGACAAGGGAATGCCTGTTCTCCTTCTGCATCCCAGGAGAAGGC 621
Query 551 TTCGATATCGAGGTCATTATCACTTTCAAAGCTATTTACACCTAGGATCAAGAGAACTTC 610
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 622 TTCGATATCGAGGTCATTATCACTTTCAAAGTTATTTACACCTAGGATCAAGAGAACATC 681
Query 611 GTCCCTACCTGTGACTCCTGTTATTCTTTCAAACTCAGAGTCAGCTCACGGAGGAACCAG 670
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ATCTCTACCTGTGACTCCCATTATTCTTTCAAACTCAGAGTCAGCTCACGGAGGAACCAG 741
Query 671 TGTTGCTCCTCAAACTCCAAACAGAAAAGGGAGTGTACACATAGCTCGCTCTCGCTCTGT 730
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 742 TGTTGCTCCTCAAACTCCAAACAGAAAAGGGAGTGTGCACATAGCTCGCTCTCGCTCTGT 801
Query 731 GCCCCTTAACGACAAGGAATTAAGCCTGAAGGGAATGGATTCATTTTTCAGAGTAATTCC 790
||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 802 GCCTCTTAATGACAAGGAATTAAGCCTAAAGGGAATGGATTCATTCTTCAGAGTAATTCC 861
Query 791 TTCGACTCCTCGTGTTAAGGAAGGAGACGTTTTCTCAAATGCATCAGAGGCTGGTAATAC 850
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 862 TTCGACTCCTCGTGTAAAGGAAGGAGATGTTTTCTCAAATGCATCAGAGACTGGTAATAC 921
Query 851 TGAAACAGGTGATGCTGATGGAGAAGACATACCTGAGGATGAAGCAGTTTGTAGGATTTG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TGAAACAGGTGATGCTGATGGAGAAGACATACCTGAGGATGAAGCAGTTTGTAGGATTTG 981
Query 911 TTTGGTAGAGCTCTGTGAAGGAGGAGAAACCTTAAAAATGGAGTGTAGTTGCAAAGGCGA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TTTGGTAGAGCTCTGTGAAGGAGGAGAAACCTTAAAAATGGAGTGTAGTTGCAAAGGCGA 1041
Query 971 ACTTGCTCTTGCCCACAAAGATTGTGCTCTTAAATGGTTCACCATAAAGGGTAACAAGAC 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ACTTGCTCTTGCCCACAAAGATTGTGCTCTTAAATGGTTCACCATAAAGGGTAACAAGAC 1101
Query 1031 TTGTGAGGTGTGTAAACAAGAAGTTAAGAACTTACCTGTAACACTCTTACGCATCCAAAG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1102 TTGTGAGGTGTGTAAACAAGAAGTTAAGAACTTACCTGTAACACTCTTACGGATCCAAAG 1161
Query 1091 CCTTCGAAATTCTGGTGTTCCTCAGCTAGATGTCTCTGGCTATAGGGTGTGGCAGGAGGT 1150
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1162 CCTTCGAAATTCTGGTGTTCCTCAGCTAGATGTCTCGGGCTACAGGGTTTGGCAGGAGGT 1221
Query 1151 ACCGGTTCTAGTAATCATCAGCATGCTCGCTTACTTCTGCTTCCTCGAGCAGCTCCTGGT 1210
|| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1222 GCCAGTTCTAGTAATCATTAGCATGCTCGCTTACTTCTGCTTCCTCGAGCAACTCCTGGT 1281
Query 1211 TGAGAATATGGGTACAGGTGCCATCGCTATATCACTGCCGTTTTCTTGTATTCTTGGTCT 1270
|||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1282 TGAGAAAATGGGTACAGGCGCAATCGCGATATCACTGCCGTTTTCTTGTATTCTTGGTCT 1341
Query 1271 TCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAGTAATGAGAAG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 TCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAGTAATGAGAAG 1401
Query 1331 ATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTCGTTCTCTTCGCCCATATATT 1390
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1402 ATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTTGTTCTCTTCGCCCATATATT 1461
Query 1391 TTACTCTGTGGTGAAGTTGCAACCAGTTCTGTCAGTTCTTCTGTCAACATTTGCTGGATT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TTACTCTGTGGTGAAGTTGCAACCAGTTCTGTCAGTTCTTCTGTCAACATTTGCTGGATT 1521
Query 1451 TGGTGTATGCATATGCGGAAGTTCAGTGATGGTTGAGTTTGTGAGATGGAGACGAAGATG 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TGGTGTATGCATATGCGGAAGTTCAGTGATGGTTGAGTTTGTGAGATGGAGACGAAGATG 1581
Query 1511 GCGAGCCAGAAGGCTAGAGCAACAGCTGAACCATGCTTTGACTCTGTCACAACCGCCGCA 1570
||||||||||||||||||||||||||||||||| | | ||| | || |||||| ||
Sbjct 1582 GCGAGCCAGAAGGCTAGAGCAACAGCTGAACCA-G----G-CTCAG--AC-ACCGCCCCA 1632
Query 1571 ACCACTGGATCCAACAACCTCTCTGCATCATTCAAATACCTCATAGAGAGCCAAGAAGTG 1630
||| ||||||||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 1633 ACCGCTGGATCCAACAACCTCTCTGCATCATTCAAATGCCTCAT--AGAGCCCAGAAGTG 1690
Query 1631 GACA-GATGATTTTACATTTATACAGTGTAGTTTGGTTAATGTTTATGTAATGATTTGTA 1689
|| | |||||||||||||||||||| ||||||||||||||| | ||| |||||||||||
Sbjct 1691 GA-AGGATGATTTTACATTTATACA--GTAGTTTGGTTAATG-TAATGCAATGATTTGTA 1746
Query 1690 TAAAAGAAAAAGAGAAAGTGATCCAAGGAATGCTTAAAGATTGTTCCTTTTGTTTGTTTT 1749
|||||| ||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 1747 TAAAAG-AAAAGAGAAAGTGAT-CAAGGAATGCTTAAAGA-------------TTG--TT 1789
Query 1750 ACATACACATTTGTATTGTTGTAAGTTTGTAACTTTGATTTGCTCAATCTCTGCAAATGA 1809
| | | |||| ||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 1790 ---T-C-C-TTTG-CTTGTT-T---TTTGTATCTTTGATTTGCTCAATCTCTGCAAATGA 1838
Query 1810 AATGTTTGTAGCAGTATTGG-TTTCTCTGTATAATAAAAAGATTTA 1854
||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct 1839 AATGTTTGTAGTAGTATTGTATTTCTTTGTATAATAAAAAGATTTA 1884
Score = 134 bits (72), Expect = 3e-30
Identities = 113/131 (86%), Gaps = 9/131 (7%)
Strand=Plus/Plus
Query 2 TAGCTACTGTGTCACGCTTTTCTCTAGCGAATACTTTGATGCTTCTTCATGACTCTTTAA 61
|||||||||||||||||||||||||||| || |||||||| | |||| || | | ||
Sbjct 15 TAGCTACTGTGTCACGCTTTTCTCTAGCAAAAACTTTGATCCCTCTTAAT-A-T----AA 68
Query 62 CAAGATTATTCTGAGCTTTTCCTCTGGCCTTCTAA-TTATTAAAGTCTTCCTTTTTAT-- 118
|||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||
Sbjct 69 GAAGATTATTCTGAGATTTTTCTCTGGCCTTCTAAATTATTAAAGTCTTCTTTTTTATAT 128
Query 119 CTATTGTTAAG 129
|||||||||||
Sbjct 129 CTATTGTTAAG 139
> Ahg932853 jgi|Araly1|932853|scaffold_400841.1
Length=367
Score = 254 bits (137), Expect = 2e-66
Identities = 139/140 (99%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1261 TTCTTGGTCTTCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTGGTCTTCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAG 60
Query 1321 TAATGAGAAGATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTCGTTCTCTTCG 1380
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TAATGAGAAGATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTTGTTCTCTTCG 120
Query 1381 CCCATATATTTTACTCTGTG 1400
||||||||||||||||||||
Sbjct 121 CCCATATATTTTACTCTGTG 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5