BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60680.1 Length=832 Score E Sequences producing significant alignments: (Bits) Value Ahg496217 jgi|Araly1|496217|fgenesh2_kg.8__2033__AT5G60680.1 1035 0.0 Ahg484911 jgi|Araly1|484911|fgenesh2_kg.5__903__AT3G45210.1 176 2e-43 Ahg481665 jgi|Araly1|481665|fgenesh2_kg.4__725__AT2G28400.1 130 2e-29 > Ahg496217 jgi|Araly1|496217|fgenesh2_kg.8__2033__AT5G60680.1 Length=787 Score = 1035 bits (560), Expect = 0.0 Identities = 751/834 (90%), Gaps = 49/834 (6%) Strand=Plus/Plus Query 1 TAAAACCAAAGACTCCCTCACGACTAATTCTTCTTCTTCATTAGCAGATTAAACAAATCT 60 ||||| |||||||| |||||||||||||||||||||||||||| || | ||||||||||| Sbjct 1 TAAAAGCAAAGACTGCCTCACGACTAATTCTTCTTCTTCATTACCA-AATAAACAAATCT 59 Query 61 CAACATTCGAATTTTTAAAAATTCTTCAAAATCTCTTCTTCAATGGCGACGGGAAAGAGT 120 |||| |||||| || ||| | |||||||| ||||||||||||||||||||| Sbjct 60 CAACTTTCGAA---TT-----TTC--C---ATCTCTTCATCAATGGCGACGGGAAAGAGT 106 Query 121 TACTACGCTAGGCCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 TACTACGCTAGACCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 166 Query 181 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTTCAATCCAATCCACTCCGATTCA 240 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 167 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTACAATCCAATCCACTCCGATTCA 226 Query 241 CCAGATTTTTGCCGTAAAATCTCTTCATCAGTCAGATCCGGTAAAAAATCGTCGAATCGT 300 ||||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct 227 CCAGATTTTCGCCGCAAAATCTCTTCATCAGCCAGATCCGCTAAAAAACCGTCGAATCGT 286 Query 301 CCCTCCGCCGCTTCCTCCGCCGCAGCAGCGTCGTCGCTTCCTGTTAACGTGCCGGACTGG 360 |||||||||| | ||||||||||||||||||||| ||||| ||||||||| Sbjct 287 CCCTCCGCCG-----T-------AGCAGCGTCGTCGCTTCCTGTAAACGTACCGGACTGG 334 Query 361 TCCAAGATTCTCCGCGG-AGAATACCGCGATAACCGACGGAGAAGCATCGAGGATAACGA 419 |||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||| Sbjct 335 TCCAAGATTCTCCG-GGAAGAATACCGTGATAACCGCCGGAGAAGCATCGAGGATAACGA 393 Query 420 CGACGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGTTTCTGGC 479 ||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| || Sbjct 394 CGACGAT---GATGATAACGAAGACGGAGGCGGTTGGTTGCCGCCGCATGAGTTTCTAGC 450 Query 480 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAG 539 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 451 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTTGGGAGGACATTGAAAGGAAG 510 Query 540 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAATTTGGGTTCCAAGATTAAATATT 599 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 511 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAAATTGGGTTCCAAGATTAAATATT 570 Query 600 TGGAAACTTTTGGAGTTTTCCTTTAATTTTTGGCTTACTTCAATCATTTTCTCAAGTAAC 659 |||| |||| ||| | ||| |||| || |||||||||||||||||||||||||| Sbjct 571 TGGAG--TTTTCC--TTT-CATTT--TTTT-GGTTTACTTCAATCATTTTCTCAAGTAAC 622 Query 660 TGTCagagaagagagagagCATGTAATATTTCTAGAAATGCCCTCCATTTATCGTTATAT 719 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 623 TGTCAGAGAAGAGAGAGAGCATGTAATATTTCTAGAAATGCCCTCGATTTATCGTTATAT 682 Query 720 TCCGAAAATCTTACCCTATGTAATTGtttttttaacttttgagatttttatcacattttg 779 |||||||||||||||| |||||||| ||||| ||||| | |||| | |||||||| Sbjct 683 TCCGAAAATCTTACCC-ATGTAATT-TTTTT----CTTTT-AC-TTTTGAG-ACATTTTG 733 Query 780 cgtaatgagtaatagataatgttttcttttttt-GGAAGAGTGTTTGTTTTGTT 832 ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 734 CGTAATGAGTAATAGATTATGTTTTCTTTTTTTTGGAAGAATGTTTGTTTTGTT 787 > Ahg484911 jgi|Araly1|484911|fgenesh2_kg.5__903__AT3G45210.1 Length=666 Score = 176 bits (95), Expect = 2e-43 Identities = 149/174 (86%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 423 CGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGT-TTCTGGCGA 481 |||| ||||||| ||| ||||||| | || || ||||||||||||| || |||||| Sbjct 293 CGATAACGATGACGACGGAGACGGT-G-GA-AAATTGCCGCCGCATGAGTATT-TGGCGA 348 Query 482 AGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAGAG 541 |||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||| Sbjct 349 AGACGAGAATGGCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAG 408 Query 542 ATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAA-ATTTGGGTTCCAAGATTAA 594 || ||||||||||||||||||||||||| ||||| | | ||||| ||||||| Sbjct 409 ATATGAGTAGGGTTCGAAATGCAATTTTGGAAAAGACT-GGGTTTTTAGATTAA 461 > Ahg481665 jgi|Araly1|481665|fgenesh2_kg.4__725__AT2G28400.1 Length=763 Score = 130 bits (70), Expect = 2e-29 Identities = 123/147 (84%), Gaps = 9/147 (6%) Strand=Plus/Plus Query 456 GTTACCGCCGCATGAGTTTCTGGCGAAGAC-GAGAATGGCTTCGTTCTCGGTTCATGAAG 514 ||| ||||||||||| || || ||||| | ||| |||||||| || ||||||||||||| Sbjct 414 GTT-CCGCCGCATGAATTGCTTGCGAA-CCGGAGGATGGCTTCATTTTCGGTTCATGAAG 471 Query 515 GAG-TAGGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTTCGAAATGCAATTTTTGAA 573 | | | ||||||||||||||||||||||||||||||||||| |||||| | |||||| || Sbjct 472 GTGCT-GGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTGCGAAATACTATTTTT-AA 529 Query 574 AAATTTG-GGT-TCCAAGATTAAATAT 598 || || | || || |||||||| ||| Sbjct 530 AA-TTAGAGGGATCGAAGATTAATTAT 555 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30765194019 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5