BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60850.1 Length=1425 Score E Sequences producing significant alignments: (Bits) Value Ahg950837 jgi|Araly1|950837|scaffold_802724.1 1441 0.0 > Ahg950837 jgi|Araly1|950837|scaffold_802724.1 Length=980 Score = 1441 bits (780), Expect = 0.0 Identities = 917/981 (93%), Gaps = 18/981 (2%) Strand=Plus/Plus Query 108 TCTTTATCATCATCTCTTCGAAATGCAAGATATTCATGATTTCTCCATGAAcggagttgg 167 ||||||||||| ||||| |||||||||||||||||||||| ||| |||| ||||||||| Sbjct 1 TCTTTATCATC-TCTCTAAGAAATGCAAGATATTCATGATTACTCGATGACCGGAGTTGG 59 Query 168 tggtgggggaggaggaggagggaggtttttcggtggaggaatcggcggcggaggaggtgg 227 ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 60 CGGTGGAGGAGGTGGAGGAGGGAGGTTTTTCGGTGGAGGAATGGGCGGTGGAGGAGGTGG 119 Query 228 tgatcgaaggaTGAGAGCTCATCAGAACAATATACTTAACCATCATCAATCTCTCAAGTG 287 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGATCGGAGGATGAGAGCTCATCAGAACAATATACTTAACCATCATCAATCTCTCAAGTG 179 Query 288 TCCTCGTTGTAATTCTCTTAACACAAAGTTCTGTTACTACAACAATTACAATCTTTCTCA 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCCTCGTTGTAATTCTCTTAACACAAAGTTCTGTTACTACAACAATTACAATCTTTCTCA 239 Query 348 GCCTCGTCACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGTGGTGTTCTCCGTAA 407 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 240 GCCTCGACACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGCGGTGTTCTCCGTAA 299 Query 408 CGTTCCCGTCGGAGGTGGTTGCCGGAAAGCTAAACGTTCGAAAACAAAACAGGTTCCGTC 467 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 CGTTCCCATCGGAGGTGGTTGCCGAAAAGCTAAACGTTCGAAAACAAAACAGGTTCCGTC 359 Query 468 GTCGTCATCAGCCGACAAACCAACGACGACGCAAGATGATCATCACGTGGAGGAGAAATC 527 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTCGTCCTCAGCTGACAAACCAACGACGACGCAAGATGATCATCACGTGGAGGAGAAATC 419 Query 528 GAGTACAGGATCTCACTCTAGCAGCGAGAGCTCTTCTCTCACCGCTTCTAACTCTACCAC 587 |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 420 GAGTACGGGATCTCACTCTAGCAGCGAGAGCTCTTCTCTCACTGCTTCCAACTCTACCGC 479 Query 588 CGTCGCCGCCGTCTCCGTCACCGCGGCGGCGGAAGTTGCTTCGTCGGTTATTCCAGG-T- 645 |||| ||||||||||||||||||||||||| || |||||||||||||||||||| || | Sbjct 480 CGTCCCCGCCGTCTCCGTCACCGCGGCGGCAGAGGTTGCTTCGTCGGTTATTCCCGGGTC 539 Query 646 --TT-T----G-----A-TATGCCTAATATGAAAATTTACGGTAACGGGATCGAGTGGTC 692 || | | | |||||||||||||||| | ||||| ||||||||||||||||| Sbjct 540 GGTTATTCCCGGTTTTAATATGCCTAATATGAAACTGTACGGGAACGGGATCGAGTGGTC 599 Query 693 GACGTTACTTGGACAAGGCTCATCGGCCGGTGGTGTTTTCTCGGAGATCGGTGGTTTTCC 752 ||||||||| |||||||||||||||| |||||| |||||||| |||||||| |||||| | Sbjct 600 GACGTTACTCGGACAAGGCTCATCGGACGGTGGAGTTTTCTCTGAGATCGGGGGTTTTAC 659 Query 753 GGCGGTTTCAGCTATTGAAACTACACCGTTTGGATTCGGGGGTAAATTCGTAAATCAAGA 812 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 660 GGCGGCGTCGGCTATTGAAACGACACCGTTTGGATTCGGGGGTAAATTCGTAAATCAAGA 719 Query 813 TGATCATCTGAAGTTAGAAGGTGAAACTGTACAGCAGCAACAGTTTGGAGATCGAACGGC 872 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 720 CGATCATCTGAAGTTAGAAGGTGAAACTGTACAGCAGCAGCAGTTTGGAGATCGAACGGC 779 Query 873 TCAGGTTGAGTTTCAAGGAAGATCTTCGGATCCGAATATGGGATTTGAACCGTTGGATTG 932 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 780 TCAGGTTGAGTTTCAAGGAAGATCTTCTGATCCGAATATGGGATTTGAACCGTTGGATTG 839 Query 933 GGGAAGTGGCGGTGGAGATCAAACACTGTTTGATTTAACCAGTACCGTTGATCATGCATA 992 |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 840 GGGAAGTGGCGGAGGAGATCAAACACTGTTTGATCTAACCAGCACCGTTGATCATGCATA 899 Query 993 CTGGAGTCAAAGTCAATGGACGTCGTCTGACCAAGATCAGAGTGGTCTCTACCTTCCTTG 1052 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 900 CTGGAGTCAAAGTCAATGGACGTCGTCTGACCAAGATCAGAATGGTCTCTACCTTCCTTG 959 Query 1053 ATTCT--GATCATAGCTTCTT 1071 ||||| |||||||||||||| Sbjct 960 ATTCTCTGATCATAGCTTCTT 980 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53288252755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5