BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60940.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496246 jgi|Araly1|496246|fgenesh2_kg.8__2062__AT5G60940.1 2420 0.0
> Ahg496246 jgi|Araly1|496246|fgenesh2_kg.8__2062__AT5G60940.1
Length=1539
Score = 2420 bits (1310), Expect = 0.0
Identities = 1486/1566 (95%), Gaps = 32/1566 (2%)
Strand=Plus/Plus
Query 1 GGAGGAGGAAGAAGACGATGGTTGACACTTGACAGAGTAAGCTCAGAAATGGCGACTCTG 60
||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1 GGAGGAGGAAGAAGACGATGG-T-----TTAACAGAGTAAGCTCAGAAATGGCGACTCTG 54
Query 61 GTTTCGAATTGAACTTGTGAGGAAGGTTTTTAGGGTTATAAGGTGATAAAGAAAATGGGG 120
|||||||||| ||||||| | ||| || |||| | ||||||||| |||||||
Sbjct 55 GTTTCGAATTAAACTTGT---G-AGG----TA-GGTT-T--TGTGATAAAG--AATGGGG 100
Query 121 AATAGTGGAGATTTGGAGCAGGCTCTGCAAGATGGGAATATCTTTAGACAGCTCAATGCT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AATAGTGGAGATTTGGAGCAGGCTCTGCAAGATGGGAATATCTTTAGACAGCTCAATGCC 160
Query 181 CTTATTGTAGCTCATCTCCGTCATCACAATCTCTCACAAGTTGCAAGTGCGGTTGCTTCA 240
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 161 CTCATTGTAGCTCATCTCCGTCATCACAATCTCTCACAGGTTGCAAGTGCGGTTGCATCA 220
Query 241 GCAACAATGACACCATTGAATATTGAGGTTCCTCCAAACCGTCTTTTGGAGCTTGTTGCA 300
||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 221 GCAACGATGACACCATTGTATATTGAGGTTCCTCCAAACCGTCTTCTAGAGCTTGTTGCA 280
Query 301 AAGGGTCTTGCAGCGGAGAACAATGGGACATTGAGAGGTGTTTCTTCATCAGTCTTGTTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AAGGGTCTTGCAGCGGAGAACAATGGGACATTGAGAGGTGTTTCTTCATCAGTCTTGTTA 340
Query 361 CCTTCTTCTTATGGATCAATCACTACTCCTCGAACAGCTTCTATCGACTTTAGTGTTAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 341 CCTTCTTCTTATGGATCAATCACTACTCCTCGAACAGCTTCTATCGACTTCAGTGTTACT 400
Query 421 CATGCGAAGGGCTCATCAAAGACTATCCCAAAGCATGAATCAAAGACGCTATCAGAGCAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CATGCGAAGGGCTCATCAAAGACTATCCCAAAGCATGAATCAAAGACGCTATCAGAGCAC 460
Query 481 AAGAGCGTTGTTAGGTGTGCAAGATTTAGTCCTGATGGAATGTTTTTTGCTACTGGTGGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 461 AAGAGCGTTGTTAGGTGTGCAAGATTTAGTCCTGATGGAATGTTTTTTGCAACTGGCGGT 520
Query 541 GCAGACACATCTATTAAGCTCTTTGAGGTGCCAAAAGTTAAACAGATGATTTCAGGAGAT 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GCAGACACATCAATTAAGCTCTTTGAGGTGCCAAAAGTTAAACAGATGATTTCAGGAGAT 580
Query 601 ACTCAAGCTCGACCATTAATACGGACTTTTTATGATCATGCTGAACCGATAAACGATCTT 660
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 581 ACTCAAGCTCGACCATTAATACGGACCTTTTATGATCATGCTGAACCCATAAACGATCTT 640
Query 661 GATTTCCACCCTCGGAGCACAATCCTAATATCTAGTGCCAAAGACAACTGTATAAAGTTC 720
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GATTTCCACCCTCGAAGCACAATCCTAATATCTAGTGCCAAAGACAACTGTATAAAGTTT 700
Query 721 TTCGACTTCTCCAAAACCACGGCTAAACGAGCATTCAAAGTTTTTCAGGATACCCATAAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TTCGACTTCTCCAAAACCACGGCTAAACGAGCATTCAAAGTTTTTCAGGATACCCATAAT 760
Query 781 GTGCGCTCTATATCTTTTCATCCGTCAGGAGAGTTTCTTCTTGCAGGAACCGATCATCCA 840
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GTGCGCTCTGTATCTTTTCATCCGTCAGGAGAGTTTCTTCTTGCAGGAACCGATCATCCA 820
Query 841 ATTCCACATCTGTACGATGTAAACACATATCAGTGCTTTCTTCCTTCAAACTTCCCTGAC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 821 ATTCCACATCTGTACGATGTAAACACATATCAGTGCTTTCTTCCTTCAAACTTCCCAGAC 880
Query 901 AGTGGAGTAAGTGGAGCCATTAATCAGGTGAGATATTCTTCCACGGGATCCATCTACATT 960
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 881 AGTGGAGTAAGTGGAGCCATTAATCAGGTGCGATATTCTTCCATGGGATCCATCTACATT 940
Query 961 ACAGCCTCAAAGGATGGAGCTATTCGACTCTTTGACGGGGTTAGCGCAAAGTGTGTTCGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 ACAGCCTCAAAGGATGGAGCTATTCGACTCTTTGACGGGGTTAGCGCAAAGTGTGTTCGC 1000
Query 1021 TCCATTGGCAATGCACATGGAAAATCAGAGGTCACAAGCGCAGTGTTCACTAAAGATCAA 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1001 TCCATTAGCAATGCACATGGAAAATCAGAGGTCACAAGCGCAGTGTTCACTAAGGATCAA 1060
Query 1081 AGGTTTGTTCTCTCATCCGGTAAGGATTCCACAGTTAAGTTATGGGAAATAGGCTCAGGT 1140
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1061 AGGTTTGTTCTCTCATCCGGTAAGGATTCTACAGTTAAGTTATGGGAAATAGGCTCAGGT 1120
Query 1141 CGAATGGTAAAGGAATATCTTGGAGCAAAGCGGGTAAAACTGCGGTCTCAGGCAATTTTT 1200
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1121 CGAATGGTAAAGGAATATCTTGGAGCAAAGCGGATAAAACTGCGGTCTCAGGCAATCTTT 1180
Query 1201 AACGACACTGAAGAGTTTGTAATCTCCATAGATGAAGCAAGCAATGAGGTCGTTACATGG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AACGACACTGAAGAGTTTGTAATCTCCATAGATGAAGCAAGCAATGAGGTCGTTACATGG 1240
Query 1261 GATGCTAGAACCGCAGATAAAGTGGCAAAGTGGCCTTCTAACCATAACGGTGCACCACGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GATGCTAGAACCGCAGATAAAGTGGCAAAGTGGCCTTCTAACCATAACGGTGCACCACGG 1300
Query 1321 TGGATCGAGCACTCGCCGGTTGAATCAGTCTTTGTTACTTGTGGAATAGATAGATCAATT 1380
||||| ||||||||||| | |||||||||||||||||||||||||| ||| |||||| |
Sbjct 1301 TGGATTGAGCACTCGCCAGATGAATCAGTCTTTGTTACTTGTGGAACAGACAGATCAGTC 1360
Query 1381 CGGTTCTGGAAGGAATCCGTTTAGATGAGAATCCAATCAA-----TCAAAGTAGTGTATT 1435
||||||||||||||||||||||||| ||||| |||||||| |||||||||| | ||
Sbjct 1361 CGGTTCTGGAAGGAATCCGTTTAGAAGAGAA-CCAATCAAAGCAATCAAAGTAGTAT-TT 1418
Query 1436 TTATTCTCTTAAAACATAAACCATACATGaaaaaaaaaaaaaaTCCGTTGTTCATGTTGC 1495
|||||||||||||||| |||||||||||| ||||||| |||||||||||| |||
Sbjct 1419 TTATTCTCTTAAAACAAAAACCATACATGGAAAAAAAC-----TCCGTTGTTCATATTGG 1473
Query 1496 TTTGTAGAAGACGCAAGTAATCTTCCAGGTCACTGCAAAAGAACGAAATCAAAGCAGGTG 1555
||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1474 TTTGTGGAAGACGCAAGTAATGTTCCAGGTCACTGCAAAAGAACAAAAACAAAGCAGGTG 1533
Query 1556 AGCTTC 1561
||||||
Sbjct 1534 AGCTTC 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5