BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60970.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg496250 jgi|Araly1|496250|fgenesh2_kg.8__2066__AT5G60970.1 1550 0.0 > Ahg496250 jgi|Araly1|496250|fgenesh2_kg.8__2066__AT5G60970.1 Length=1105 Score = 1550 bits (839), Expect = 0.0 Identities = 951/1003 (95%), Gaps = 15/1003 (1%) Strand=Plus/Plus Query 251 ACATGTTGCAACAACAACAG-CCGAGTTCGG--T-ATCATCTTCAAGGCAATGGACTTCA 306 ||||||||||||| |||| | |||||||||| | ||||||||||||||||||||||||| Sbjct 109 ACATGTTGCAACAGCAAC-GACCGAGTTCGGTATCATCATCTTCAAGGCAATGGACTTCA 167 Query 307 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAC 366 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAT 227 Query 367 AGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 426 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 AGCAAAGTCTGTACGGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 287 Query 427 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATC 347 Query 487 GATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCA 546 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 348 GATTGGTTACTCGAAGCAGCAAAAGATGACGTCGACAAGCTACCTCCTCTACAATTCCCA 407 Query 547 CATGGATTTAACCAGATGTATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCT 606 ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 408 CATGGGTTTAACCAAATGTATCCAAATCTCATCTTTGGAAACTCCGGGTTTGGAGAATCG 467 Query 607 CCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 666 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 468 CCATCTTCAACTTCATCAACAGCGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 527 Query 667 GATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGA 726 ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 528 GATCTTGGTGGTTCTTCCAGAACAAGATCAAGATTAACCGATACTACTACGACCCAGAGA 587 Query 727 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAACGACGAGAATAGTAATCAAGAT 786 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 588 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAACACGACGAGAATAGTAATCACGAT 647 Query 787 CATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAAC 846 ||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 648 CATCAAGGGTTCGACACCAATCATCAACAT---TTTCCACTGACCAATCCTTACAACAAC 704 Query 847 ACTTCAGCTTATTACAACCTTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAAC 906 |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 705 ACTTCATCTTATTACAACCTCGGACATCTTCAACAATCGTTAGACCAATCCGGTAATAAC 764 Query 907 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCCT 966 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 765 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAACAACAATAATCTCAATTTGCCTCCT 824 Query 967 CCTTCCTCGTCTGCCGGAGATGGATCTCAGCtttttttCGGTCCTACTCCTCCGGCAATG 1026 |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||| Sbjct 825 CCTTCCTCGTCTGCTGGAGATGGATCTCAGCTTTTTTTTGGTCCTTCTCCTCCAGCAATG 884 Query 1027 AGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCTTCTCATCATCATCAT---GTC 1083 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 885 AGCTCTCTATTCCCGACATACCCTTCGTTTCTCGGAGCTTCTCATCATCATCATCATGTC 944 Query 1084 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCT-CGAATTCAAATACCGCATCGCAGCA 1142 |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| Sbjct 945 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAG-TACGAATTCAAATACCGCCTCGCAGCA 1003 Query 1143 ACACATGATGC-CGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1201 ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1004 ACAGTTGAT-CACGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1062 Query 1202 ATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTC 1244 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1063 ATCATGATACGGATCGTCATAGTAGCGATAATGAATCAGATTC 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5