BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61010.1 Length=2852 Score E Sequences producing significant alignments: (Bits) Value Ahg950854 jgi|Araly1|950854|scaffold_802741.1 3007 0.0 Ahg346243 jgi|Araly1|346243|fgenesh1_pg.C_scaffold_4002585 457 2e-127 > Ahg950854 jgi|Araly1|950854|scaffold_802741.1 Length=1963 Score = 3007 bits (1628), Expect = 0.0 Identities = 1857/1969 (94%), Gaps = 10/1969 (1%) Strand=Plus/Plus Query 694 CTCTAGTC-TTTGGTTTTGGTTATGGCAGAGTTTGATTCCAAGGTTCCTGTTTCCGGAAT 752 |||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||| Sbjct 1 CTCTAGTCTTTTGGTTTGGGTTATGGCAGAGTTTGAATCCAAGCTTCCTGTTTCCGGGGG 60 Query 753 GAACAATCATGTCTTTGAGGCATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAA 812 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAAAATCATGTCTTTGAGGCATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAA 120 Query 813 CAACCTGGATGCCAATTTGAGAAAGCTCCTAAGTGACCTAGAGAT-GCATTTGTCAACAT 871 ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| Sbjct 121 CAACCTGGATGCCAACTTGAGAAAGCTCCTAAGTGACCTAGAG-TCGCATTTGTCAACAT 179 Query 872 TTGGGATTGCTGATACCAAAGTTGAAGATGCAGGATTCTCTGAGATCAAGAAGAGATTCA 931 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 180 TTGGGATTGCTGATACCAAAGTTGAAGATGCAGGATTCTCTGAGATCAAGGAGAGATTCA 239 Query 932 AAGAAGCTGTGAAGAGAATCCGCAGTTGGGAGACAAACCAGTCGACGATGTTT-GAAGCT 990 ||||||||||||||| |||||||||| ||||||| ||||| |||||||| ||| |||||| Sbjct 240 AAGAAGCTGTGAAGAAAATCCGCAGTAGGGAGACTAACCAATCGACGAT-TTTGGAAGCT 298 Query 991 GGTCTGTCTGAAGCTGATCAGTTCTTTCAAGCCCTGTATGACGTTCAAACAGTTCTTGTG 1050 |||||||||| ||| |||| |||||||||||||||||||| |||||| ||||||||||| Sbjct 299 GGTCTGTCTGCAGCAAATCAATTCTTTCAAGCCCTGTATGAAGTTCAATCAGTTCTTGTG 358 Query 1051 GGTTTCAAAGCTTTGCCCATGAAAACTAACCAGATGGAGAAAGATGTTTACAACCAAGCT 1110 |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||| Sbjct 359 GGTTTCAAAGCTTTACCCATCAAAACTAACCAGAAAGAGAAAGATGTTTACAACCAGGCT 418 Query 1111 ACGGTTGCTCTTGACATCGCGATGTTGAGGCTTGAGAAAGAGCTCTGTGATGTTCTGCAT 1170 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 419 ACGGTTGCTCTTGACATCGCGATGCTGAGGCTTGAGAAAGAGCTCCGTGATGTTCTGCAT 478 Query 1171 CAGCACAAACGGCATGTACAGCCTGATTACTTGGCTGTTAGTTCCCGTAGAAAAGATATT 1230 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||||| Sbjct 479 CAGCACAAACAGCATGTACAGCCTGAATACTTGGCTGTTAGTTCCCATAGAAAGGATATT 538 Query 1231 GTGTACGACGAGTCCTTTGTCTCCCTAGATGATGAAGTTATTGTCGAAGCTTCTTCACAT 1290 |||||||||||||||||||| ||| |||||||||||||| |||| ||||| |||||||| Sbjct 539 GTGTACGACGAGTCCTTTGTTTCCTTAGATGATGAAGTTGTTGTTGAAGCCTCTTCACAC 598 Query 1291 GAAGATGATGAACAGATATCGGACTTT-TATAATTCTGATTTGGTTGATCCCATCGTACT 1349 ||||||||||| |||||||| || ||| |||||||||||||| |||||||||||||| || Sbjct 599 GAAGATGATGAGCAGATATCAGA-TTTCTATAATTCTGATTTAGTTGATCCCATCGTCCT 657 Query 1350 TCCTCACATCAAAGCTATTGCAAACGCCATGTTTGCTTGCGAGTATGATCAACCATTCTG 1409 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 658 TCCTCACATTAAAGCTATTGCAAACACCATGTTTGCTTGCGAGTATGATCAACCATTCTG 717 Query 1410 TGAAGCTTTCATCGGCGTTCAAAGAGAAGCTCTGGAGGAGTATATGGTTACTCTCGAAAT 1469 ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 718 TGAAGCTTTCATCATCGTTCAAAGAGAAGCTCTGGATGAGTATATGGTCACTCTTGAAAT 777 Query 1470 GGAAAGATTCAGCTGCGTTGATGTTCTCAGAATGGACTGGGAGGATTTGAATGGTGCAAT 1529 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 778 GGAAAGATTCAGCTGCGTTGATGTTCTCAAAATGGACTGGGAGGATTTGAATGGTGCAAT 837 Query 1530 GAGAAAATGGACAAAGGTTGTTAAGATCATTACTCAGGTCTATCTCGCCAGTGAAAAACA 1589 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 838 GAGAAAATGGACAAGGGTTGTTAAGATCATTACTCAGGTCTATCTCCCCAGTGAAAAACA 897 Query 1590 GCTATGTGATCAGATTTTGGGAGACTTTGAGTCAATTTCTACAGCTTGCTTCATTGAAAT 1649 ||| ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 898 GCTCTGTGAAGAGATCTTGGGAGACTTTGAGTCAATATCTACGGCTTGCTTCATTGAAAT 957 Query 1650 CTCAAAAGATGCAATTCTATCACTCCTCAACTTTGGAGAAGCTGTGGTGCTGAGATCTTG 1709 |||||||||| || || |||| ||||||||||||||||||||||||| |||||||||||| Sbjct 958 CTCAAAAGATACAGTTATATCCCTCCTCAACTTTGGAGAAGCTGTGGCGCTGAGATCTTG 1017 Query 1710 CAAGCCAGAAATGCTTGAGCGCTTCCTTAGTATGTATGAGGTTTCAGCAGAGATTCTCGT 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1018 CAAGCCAGAAATGCTTGAGCGCTTCCTTAGTATGTATGAGGTTTCAGCAGAGATTCTCTT 1077 Query 1770 GGATGTCGATAACCTCTTCCCCGATGAAACAGGCTCGTCTTTAAGAATTGCATTTCACAA 1829 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| | Sbjct 1078 GGATGTCGATAACCTCTTCCCGGATGAAACAGGCTCGTTTTTAAGAATTGCATTCCACGA 1137 Query 1830 CCTGTCaaaaaaaCTAGCTGATCATACAACCACAACCTTCTTAAAGTTCAAAGACGCAAT 1889 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1138 CCTGTCAAAAAAACTAGCTGATCATACAACCGCGACCTTCTTAAAGTTCAAAGACGCAAT 1197 Query 1890 AGCCTCAGATGAATCCACACGCCCCTTTCATGGAGGCGGGATTCATCACCTGACCAGGTA 1949 |||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1198 AGCCTCAGATGAATCCGCACGCCCCTTTCATGGAGGCGGAATTCATCACCTGACTAGGTA 1257 Query 1950 TGTAATGAACTACTTGAAGCTTCTCCCGGAGTATACCGACTCACTAAACTCACTGCTTCA 2009 ||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||| Sbjct 1258 TGTAATGAACTACTTGAAGCTTCTCCCGGTGTATACCGACACCCTAAACTCACTTCTTCA 1317 Query 2010 GAACATACACGTTGACGACTCCATCCCCGAGAAAACAGGAGAAGATGTCCTCCCTTCGAC 2069 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1318 GAACATACACGTTGACGACTCAATACCCGAGAAAACAGGAGAAGATGTCCTCCCTTCGAC 1377 Query 2070 ATTCTCTCCAATGGCTAGACACCTCAGGTCAATCGTCACAACTCTAGAATCCAGCCTTGA 2129 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1378 ATTCTCTCCAATGGCTAGACACCTCAGGTCAATCGTCACAACTCTGGAATCCAGCCTTGA 1437 Query 2130 GCGAAAAGCTCAGCTGTACGCAGACGAAGCACTGAAATCCATTTTCCTGATGAACAACTT 2189 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 GCGAAAAGCTCAGCTTTACGCAGACGAAGCACTGAAATCCATTTTCCTGATGAACAACTT 1497 Query 2190 CCGTTACATGGTCCAGAAGGTAAAGGGATCAGAGCTGAGACGCTTGTTTGGAGACGAATG 2249 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1498 CCGTTACATGGTCCAGAAGGTAAAGGGATCAGAGCTGAGACACTTGTTTGGAGACGAATG 1557 Query 2250 GATCAGGAAGCACATTGCAAGCTACCAATGCAATGTCACTAACTACGAGAGATCCACATG 2309 |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| Sbjct 1558 GATCAGGAAGCACATTGCAAGCTACCAACGCAATGTCACAAACTACGAGAGATCCTCATG 1617 Query 2310 GAGCTCCATACTCGCTTTGCTCAGAGACAACAACGACTCTGTAAGAACCCTGAGAGAAAG 2369 |||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1618 GAGCTCTATACTTGCTTTGCTCACAGACAACAACAACTCTGTAAGAACCCTGAGAGAAAG 1677 Query 2370 ATGCAGACTTTTCAGCCTTGCATTTGATGATGTTTACAAGAACCAAACCCGTTGGTCAGT 2429 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1678 ATGCAAACTTTTCAGCCTTGCATTTGATGATGTTTACAAGAACCAAACCCATTGGTCAGT 1737 Query 2430 CCCTGATTCAGAGCTCCGCGATGATCTTCACATCTCGACCTCTGTCAAGGTTGTTCAGTC 2489 |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1738 TCCTGATCCAGAGCTCCGCGATGATCTTCACATCTCAACCTCTGTCAAGGTTGTTCAGTC 1797 Query 2490 TTACAGAGGATTTCTTGGAAGAAATGCAGTTCGCATAGGCGAAAAACACATCCGATACAC 2549 |||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct 1798 TTACAGGGGATTTCTTGGAAGAAATGCGGTTCGTATAGGTGAAAAACATATCCGATACAC 1857 Query 2550 TTGTGAAGACATTGAGAATATGCTCCTTGATCTCTTTGAATGTTTGCCATCTCCAAGATC 2609 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 1858 TTGTGAAGACATTGAGAATATGCTCCTTGATCTCTTTGAATGTTCGCCATCTCCGAGATC 1917 Query 2610 ACTGCGCAGCTCTCGTAAGAgatgatgatgatgatgaCTTGAGCCTAAT 2658 | ||||||| ||||||| | || |||||||||||||||| ||||||||| Sbjct 1918 ATTGCGCAGTTCTCGTA-G-GA-GATGATGATGATGACTCGAGCCTAAT 1963 > Ahg346243 jgi|Araly1|346243|fgenesh1_pg.C_scaffold_4002585 Length=432 Score = 457 bits (247), Expect = 2e-127 Identities = 291/312 (93%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 715 ATGGCAGAGTTTGATTCCAAGGTTCCTGTTTCCGGA-ATGAACAATCATGTCTTTGAGGC 773 |||||||||||||| |||||| |||||||||||||| | ||| ||||||||||||||||| Sbjct 1 ATGGCAGAGTTTGAATCCAAGCTTCCTGTTTCCGGAGA-GAAAAATCATGTCTTTGAGGC 59 Query 774 ATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAACAACCTGGATGCCAATTTGAG 833 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 60 ATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAATAACCTGGACGCCAATTTGAG 119 Query 834 AAAGCTCCTAAGTGACCTAGAGAT-GCATTTGTCAACATTTGGGATTGCTGATACCAAAG 892 |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| Sbjct 120 AAAGCTCCTAAGTGACCTAGAG-TCGCATTTGTCAACATTTGGGATTGCTGATACGAAAG 178 Query 893 TTGAAGATGCAGGATTCTCTGAGATCAAGAAGAGATTCAAAGAAGCTGTGAAGAGAATCC 952 | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 179 TGGAAGATGCAGGATTCTCTGAGATCAAGGAGAGATTCAAAGAAGCTATGAAGAGAATCC 238 Query 953 GCAGTTGGGAGACAAACCAGTCGACGATGTTTGAAGCTGGTCTGTCTGAAGCTGATCAGT 1012 | ||||||||||||| |||||||||| |||| || ||||||||||||||||| |||| | Sbjct 239 GGAGTTGGGAGACAAGCCAGTCGACGGTGTTGGACGCTGGTCTGTCTGAAGCAAATCAAT 298 Query 1013 TCTTTCAAGCCC 1024 |||||||||||| Sbjct 299 TCTTTCAAGCCC 310 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107643032370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5