BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61190.1 Length=3318 Score E Sequences producing significant alignments: (Bits) Value Ahg496271 jgi|Araly1|496271|fgenesh2_kg.8__2087__AT5G61190.1 1764 0.0 > Ahg496271 jgi|Araly1|496271|fgenesh2_kg.8__2087__AT5G61190.1 Length=2916 Score = 1764 bits (955), Expect = 0.0 Identities = 1307/1470 (89%), Gaps = 52/1470 (4%) Strand=Plus/Plus Query 164 ATGTCGACGGCGGAGGCGGATTACGTGAAGGCCAAAACATCGGTGTGGTGGGATATAGAG 223 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGTCCACGGCGGAGGCGGATTACGTGAAGGCCAAAACGTCGGTGTGGTGGGATATAGAG 60 Query 224 AATTGCGAGGTACCCAGAGGTTGGGATGCGCACGTGATTGCCTTGAATGTGAGTTCGTCT 283 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 61 AATTGTGAGGTACCCAGAGGTTGGGATGCGCACGTGATTGCCCAGAATGTGAGTTCGGCT 120 Query 284 TTGTTGAAGATGAATTATTGTGGACCTGTCTCAATTTCAGCTTATGGCGATACCAATCTC 343 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 TTGTTGAAGATGAATTATTGTGGACCTGTCTCAATTTCGGCTTATGGCGATACCAATCTC 180 Query 344 ATCCCTCTCCATCATCAACAAGCACTTTCTTCTACTGGTGTTGCGCTTAATCACATCCCA 403 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 181 ATCCCTCTCCATCATCAACAAGCGCTTTCTTCTACTGGTGTTGCGCTTAATCACATTCCT 240 Query 404 GCAGGAGTGAAAGATGCGAGCGATAAGAAGATTCTGGTGGATATGTTGTTGTGGGCAATA 463 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 241 GCAGGAGTGAAAGATGCGAGCGATAAGAAGATTTTGGTGGATATGTTATTGTGGGCGATA 300 Query 464 GACAACCCTGCGCCAGCGAATTTATTGCTAATCTCTGGTGACAGAGACTTCTCTAACGCT 523 ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 301 GACAACCCTGCCCCAGCGAATTTCTTGCTTATCTCTGGTGACAGAGACTTCTCTAACGCT 360 Query 524 CTCCATCAGCTAAGAATGAGGAGGTATAACATTCTTTTGGCTCAACCTCCACGAGCCTCT 583 ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 361 CTCCACCAGCTTCGAATGAGGAGGTATAACATTCTTTTGGCTCAACCTCCACGGGCCTCT 420 Query 584 GTGCCGCTTGTTGCTGCTGCCAGAGATGTTTGGCTCTGGACAGTCCTAGCCTCGGGAGGT 643 |||||||||||||||||||| | |||||| |||||||||||| ||||||||| |||||| Sbjct 421 GTGCCGCTTGTTGCTGCTGCTAAAGATGTATGGCTCTGGACAACCCTAGCCTCCGGAGGT 480 Query 644 CCTCCTCTTACAAG-TGTTGAATCCTCTCTACTCTTTAACAATGGGGGTTTTCGTGTCTC 702 |||||||||||||| || ||||||||||||||||||| ||||||| || ||| |||||| Sbjct 481 CCTCCTCTTACAAGTTG-TGAATCCTCTCTACTCTTTTGCAATGGGCGTATTCATGTCTC 539 Query 703 TAATAAAGGTGTGTCGAAACTTCCAGTTTCTGAACAAGCTCAGCCTAGCCAACCAACTGG 762 |||||||| ||||| ||||| ||| |||||||||||||||||||| ||||||||| |||| Sbjct 540 TAATAAAGATGTGTTGAAACATCCGGTTTCTGAACAAGCTCAGCCCAGCCAACCACCTGG 599 Query 763 TTCAACTTCTAACGCTGGAGATACTAAGGATCATAAAACCAGAGAAAAGCA-TGTTCCAA 821 ||| |||||||| ||| |||||||||||||| |||||||||||||| || | |||||| Sbjct 600 TTCTACTTCTAAAGCT---GATACTAAGGATCACAAAACCAGAGAAAACCACT-TTCCAA 655 Query 822 GAGGATCACTTCAAGAAAATAGAAAAAATATGCTTCAGCATAGCAGTGGAGCCACAGGGG 881 ||||||||| |||||| | |||||||||||| ||||| || |||| |||||||| || | Sbjct 656 GAGGATCACCTCAAGAGACGAGAAAAAATATGTTTCAGAATGGCAGAGGAGCCACCGGTG 715 Query 882 AATCTGCTACTACCTGCAGAATATGCAATGTTGTATGTGATAGCTTTGAAAAGTTCACCG 941 || || |||||| |||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 716 AACCTAATACTACTTGCAGATTATGCAATGTTGTATGTGATAGCTTTGAAAAATTCACCG 775 Query 942 CTCACCTTTCAGATATAAGGCATATATCTCAGGCTGCCATTGTAGAAAGTCGCAGAGCTC 1001 ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||| ||||| Sbjct 776 CTCACCTCTCAGATATAAGGCATATATCTCAGGCTGCCTTTGTAGGAAGTTGCAAAGCTC 835 Query 1002 AGGCCAGCGTTTCAGCCAAACCCATACATCAAGCAGTTCTTGTCGAACCTTTGTTGTGCA 1061 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 836 CGGCCAGCGTTTCAGCCAAACCCATACAGGAAGCAGTTCTTGTCGAACCTTTGTTGTGCA 895 Query 1062 AAGTTTGCCAGATCAGCTTTACCAACAATGATACATATAAAAATCACACCTATGGaaaaa 1121 ||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||||| Sbjct 896 AAGTTTGCCAGATAAGCTTTACCAACAAAGATGCATATAAAAGTCACACCTATGGAAAAA 955 Query 1122 aaCACCGAAACAATTTGGAACTGCAATCAGGTAAGTCCAAAAACATTTTGGTGGGACCAG 1181 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 GACACCGAAACAACTTGGAACTGCAATCAGGTAAGTCCAAAAACATTTTGGTGGGACCAG 1015 Query 1182 CTGAGCCTTCCAAAGAGGTTCTAGAGAAACATAATATGAATAAGAAGGTGATGATTGAGA 1241 ||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||| | Sbjct 1016 CTGAGCCGTCCAAGGAGGTTCTAGAGAAACATAAGAAGAATAAGAAGGTGTTGATTGA-A 1074 Query 1242 G-TAGAGCTCAGGCAAACGCTGAATTCGTTTGTC-TTATGTGCAATGTGGTGTGCCAGAG 1299 | ||||||| || |||||||||| |||| ||||| || |||||||||||||||||||||| Sbjct 1075 GGTAGAGCTAAGACAAACGCTGATTTCGCTTGTCGTT-TGTGCAATGTGGTGTGCCAGAG 1133 Query 1300 TCAGATTGTCTTTAATTCTCATCTGCGCGGTAAGAAGCATGCCAACATGCTGAGTCAATC 1359 ||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| Sbjct 1134 TCAGATTGTCTTTGATTCTCATCTGCGGGGTCAGAAGCATGCTAACATGCTGAGTCAATC 1193 Query 1360 AGAGGCACT-------CA-----T-TGT--TTCTACA-AAGCTTCAAGAGAAAGGAGTCG 1403 ||||||| | || | | | ||||| | ||||||||||||||| | |||| Sbjct 1194 AGAGGCAATGTTGGATCAGGCACTCTTTGATTCTA-ATAAGCTTCAAGAGAAATGTGTCG 1252 Query 1404 GAGAAAAAGAACAACCAAGTGAAACAGTTGCAGAGCTTCAGTTGCAGTCTCAAAAGGCTC 1463 ||||||| | |||||| | |||||| ||||||||| ||||||||||||||||||||||| Sbjct 1253 GAGAAAAGGTTCAACCAGGAGAAACATTTGCAGAGCCTCAGTTGCAGTCTCAAAAGGCTC 1312 Query 1464 AAGAGAA------G--C----AG--G--T--ACTAGTTGATTCTAAGAAGCTTCCAGAGA 1505 | ||||| | | || | | ||||||||||||||| ||||||| |||| Sbjct 1313 ACGAGAATACCAAGTGCTTTGAGAAGCATGTACTAGTTGATTCTAAAAAGCTTCAAGAGC 1372 Query 1506 AAGGTGATGAAGTAAAGGGTCAACCAAAAGAAATGACTGCACTGCGTAATGCAAGT-GCT 1564 ||| || ||||| ||||| |||||||| ||||| ||||||| || ||| | || | ||| Sbjct 1373 AAGCTGTTGAAGAAAAGGATCAACCAAGTGAAATAACTGCACAGCCTAAAGTAA-TCGCT 1431 Query 1565 AAATACAT-T-TGTCGTATGTGCAATGTGG 1592 ||| ||| | |||||| |||||||||||| Sbjct 1432 AAA--CATGTATGTCGTTTGTGCAATGTGG 1459 Score = 1048 bits (567), Expect = 0.0 Identities = 734/815 (90%), Gaps = 9/815 (1%) Strand=Plus/Plus Query 1672 GGCACTCATTGATTCTAAGAAGCTTCAAGAGAAAGGTTTCGGAGAAAAAGAACAACCAAG 1731 |||||| ||||||||| |||||||||||||||||||| |||||||||| || |||||||| Sbjct 1458 GGCACTTATTGATTCTCAGAAGCTTCAAGAGAAAGGTGTCGGAGAAAAGGATCAACCAAG 1517 Query 1732 AGAAACAATTGTAGAGCCACAGTTGCAGTCTCAAAACGCTCAAGAGAATAGCAAGTGTTT 1791 ||||||| |||||||||| ||||| ||| ||||||||||||||||||||| ||| |||| Sbjct 1518 AGAAACAGTTGTAGAGCCTCAGTTCCAGCCTCAAAACGCTCAAGAGAATAACAATTGTTA 1577 Query 1792 CGAAAAGCATGTTGTCATGGTGAATCAATCAGAGGTACTCATCAATGCGAGTAAGCTTGA 1851 || |||||||||||||||||||||||||||||||| |||||| |||| || |||||||| Sbjct 1578 CGGAAAGCATGTTGTCATGGTGAATCAATCAGAGGAACTCATTTATGCTAGGAAGCTTGA 1637 Query 1852 AGAGAAAGATGCCCAAGAAAAAGCTCAACCAATAGAATCAATAGCCGAACCTCAGTCGCA 1911 ||||||||||| || | | |||||||||||| |||| |||| || |||||||||||||| Sbjct 1638 AGAGAAAGATGTCC--G-AGAAGCTCAACCAAAAGAAACAATTGCAGAACCTCAGTCGCA 1694 Query 1912 GTCTCAAAACACTCAAGAGCATACCAAATTCTTTGAGAAGCAAAACGAAGAGTTGAGAAA 1971 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1695 GTCTCAAAACACTCAAGAGCATACCAAATTCTTTGAGAAGCAAAACGAAGAGTTGAGAAA 1754 Query 1972 GATTTGTGGCACTTTAGAAAGCAGTGTAAAAGAACCTCTTCCAAGTACTAAGGACTGGGT 2031 |||||||||||| | |||||||||||||||||||| | |||||||||| || ||| | || Sbjct 1755 GATTTGTGGCACATCAGAAAGCAGTGTAAAAGAACTTTTTCCAAGTACCAAAGACCGTGT 1814 Query 2032 GGAGACTCTTAACAAACAGATTCCAAATGGAGAATTTTTCTTTGGTGACCTAAGATCTGA 2091 |||||| ||||||||||||||||||||| ||||||||| ||||||||| ||| ||||| Sbjct 1815 CGAGACTGTTAACAAACAGATTCCAAATGCAGAATTTTTGTTTGGTGACATAATTTCTGA 1874 Query 2092 TTTTGAAGTACCCAG-GGAAGCAAGTGAATGTTT-TGATGGCATTGTCAAGCCTGT-AAA 2148 |||||||||| |||| ||| ||||| |||| ||| || |||||||||||||||||| ||| Sbjct 1875 TTTTGAAGTAGCCAGAGGA-GCAAGAGAAT-TTTCTGGTGGCATTGTCAAGCCTGTGAAA 1932 Query 2149 CCTTTCCAAAGGAGAAACTAAGCATTCATGGGAGGCCGCCTTTGTAGCCAGCAATGGTTC 2208 | | |||||||||| |||| ||||||| ||||||||||||||| |||| || ||||| | Sbjct 1933 C-TCTCCAAAGGAGCAACTGTGCATTCAAGGGAGGCCGCCTTTGGAGCCGGCGATGGTGC 1991 Query 2209 TCAGTCCAGCGTTTCAACCAATCCTTTGAAGGAACCAGAGGGTTTGCAGCCCGTGTGGTG 2268 ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 1992 TCAGTCCAGCGTTTCAACCAAACCTATGAAGGAACCAGAGGGTTTGCAGCCTGTGTGGTG 2051 Query 2269 CCAAGTCTGCCAGATCAGCTGCAACAGCAAGGTTGCATTTGCAAGTCACACATATGGGAA 2328 |||||||||||||||||||||||||| |||||||| || |||||||||||| |||||||| Sbjct 2052 CCAAGTCTGCCAGATCAGCTGCAACAACAAGGTTGTATATGCAAGTCACACCTATGGGAA 2111 Query 2329 AAAACACCGACAGAACTTGGAATCACAATCAGCCAAGAACGAAACTATGTCTACTGGACC 2388 |||||| ||||||||| |||||| |||||||||||| ||||||| |||||||| ||||| Sbjct 2112 AAAACATCGACAGAACATGGAATTACAATCAGCCAAAAACGAAAATATGTCTAAGGGACC 2171 Query 2389 AGGCAAGCTTTCTAAAGATTATGGAGAAAAAACGAAGAAAGTATCATGCAAAAACCAAAC 2448 || |||||||||||||||||||||||| ||||||||||||||| || |||||||| |||| Sbjct 2172 AGCCAAGCTTTCTAAAGATTATGGAGAGAAAACGAAGAAAGTACCACGCAAAAACGAAAC 2231 Query 2449 CACATTTGATTCTCAACTGAAGAGTCAGAACCATT 2483 || ||||||||||||||||||||||||||||||| Sbjct 2232 AACCTTTGATTCTCAACTGAAGAGTCAGAACCATT 2266 Score = 765 bits (414), Expect = 0.0 Identities = 488/524 (93%), Gaps = 4/524 (1%) Strand=Plus/Plus Query 2678 GAATTGAACCAAGAAAAACATAGAGAAGCACTGGAGCAGTTCAGTATTGACTCAAGGATA 2737 ||||| |||||||||||| ||||||||| |||||||||||| | ||||||| |||| | Sbjct 2395 GAATTCTACCAAGAAAAACCGAGAGAAGCATTGGAGCAGTTCATTGTTGACTCGAGGACA 2454 Query 2738 ATCCGAGAAGAAACCGATCAAGAAAAAGAAGCAACAGAGGAGCAGACACTTGTAAAGATG 2797 | ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| Sbjct 2455 ACCCGAGAAGAAACCGACCAAGAAAAAGAAATAACAGAGGAGCACACACTTGTAAAGATG 2514 Query 2798 GATGATCTTGGGTTTCGAGGGGCACCAGAAGATAAAGTGGAACTGAAGGAGAGACACA-C 2856 |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| | | Sbjct 2515 GATGATGTTGGGTTTCGAGGGGCACTAGAAGATAAAGTGGAATTGAAGGAGAGACA-AGC 2573 Query 2857 CGTATCTGAGAACTTGGTGCACCGTGTCTTCACTGAACAGAATCGAGAGTCTAGAATACC 2916 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2574 CGTATCTGAGAATTTGGTGCACCGTGTCTTCACTGAACAGAATCGAGAGTCTAGAATCCC 2633 Query 2917 CAATGAACCGAGAGGATGTTTAGATGTGATTCCTGAGAGAGTAAAACTGCCACCAAACGT 2976 ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| || Sbjct 2634 CAATGAACCGAGAGGATGTTTGGATGTGATTCCTGAGAGAGTAGAAGTGCCACCAAATGT 2693 Query 2977 GAATGTGGCCAAGAATTTGGAAGATGAGCAGAAGCATAAACCCGAACCAAAAGCACAGGA 3036 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 2694 TAATGTGGCCAAGAATTTGGAAGATGAGCCGGAGCATAAACCCGAACCAAAAGCACAGGA 2753 Query 3037 AGCCGAAAACAAGTCTGGAGGACGCAAGGATCTTCCTGGAGAGGCTGCCAAAAGGGAAGA 3096 | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2754 ACCCGAAAACAAGTCTGCAGGACGCAAGGATCATCCTGGAGAGGCTGCCAAAAGGGAAGA 2813 Query 3097 GATTAAGGGCCAAGCTGATAACTTTTGGACTCGCCTTTGGGGGAAAAAA-TATTAAAATA 3155 |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2814 GATTAAGGGCCAAGCTGATAACTTTTGGACTCGCCTTTGGGGGAAAAAGGT-TTAAAATA 2872 Query 3156 ATGTGAATTGTTAATTCATGTTTAAGTTGTCAACAATGGATGTT 3199 |||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 2873 ATGTTAATTGTTAATTCATGTTTATGTTGTCAACAATGGATGTT 2916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 125247472743 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5