BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61228.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496276 jgi|Araly1|496276|fgenesh2_kg.8__2092__AT5G61228.1 920 0.0
> Ahg496276 jgi|Araly1|496276|fgenesh2_kg.8__2092__AT5G61228.1
Length=1218
Score = 920 bits (498), Expect = 0.0
Identities = 589/633 (93%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 526 TGTTTGGTTAGTATCTACCCGAGTCTCGTAGTCCTACACAGATCCGGATCCTAGTT--TC 583
|||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| || ||
Sbjct 480 TGTTTGATTAGTTTCTACCCGAGTCTCTTAGTCCTACACAGATCCCGATCCTACTTCGTC 539
Query 584 GAAGCTAGTTCTTGTTTAGCTGAAGCTCAGACCCAAAATGCTCCAAGAACCGTCGGCTGC 643
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 540 AAAGCTAGTTCTTGTTTAGCTGAAGCTCAGACCCAGAATGCTCCAAGAACCCCCGGTTGC 599
Query 644 ATTCTCCCTCCGGCGTAACTCATTCAGACGCCGATCTCCCAGATCAAATGTCGATGACAG 703
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 600 ATTCTCGCTCCGGCGTAACTCATTTAGACGCCGATCCCCCAGATCAAATGTTGATGACAG 659
Query 704 AGGCTGGAATCCGCTCCATATCAAAGCCAGAAAAGGCGATCTGAAATCTGTCAAGCAGCT 763
||||||| ||| ||||| ||||||||| ||||||||||||||||||| || || |||||
Sbjct 660 AGGCTGGTCTCCACTCCACATCAAAGCCCGAAAAGGCGATCTGAAATCCGTTAAACAGCT 719
Query 764 TCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAG 779
Query 824 TGCACTTCACCTTGCAGCAGAGGGAGGTCACATTGAAGTCATGGATTTACTCCTAGAACG 883
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 780 TGCGCTTCACCTTGCAGCAGAGGGAGGTCACATAGAAGTCATGGATTTACTCCTGGAACG 839
Query 884 TGGGGCCAACATTGATGCTAAAACATGGGGCTCATGCGGGTGGACTCCTCTCCACGCTGC 943
|||||||||||| ||||| | |||||||||||| ||||||||||| ||||||||||||||
Sbjct 840 TGGGGCCAACATCGATGCCAGAACATGGGGCTCGTGCGGGTGGACCCCTCTCCACGCTGC 899
Query 944 AGCCAAAGAGCGGAAGAGAGAAGCAGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGC 1003
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 AGCCAAAGAGCGAAAGCGAGAAGCGGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGC 959
Query 1004 AGATGATATAACTGATACCAGGTTTAATCCGCCGGTGCATTACTGTCACGGCCTTGAATG 1063
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 AGATGATATAACTGATACAAGGTTTAATCCGCCGGTGCATTACTGTCACGGACTTGAATG 1019
Query 1064 GGCGTACGAGGAAATGAAGAAGCTTAACAGCGAGTCTTCTTCTTCATCTGGTGGAGACAC 1123
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||
Sbjct 1020 GGCGTACGAGGAAATGAAGAAACTTAACAGTGAGTCTTCTTC---ATCTGGTGGAGATAC 1076
Query 1124 ATCTTCCAGTTCTGACAACTGAACTTCTTCTTG 1156
||||||||||||||| |||||||||||||||||
Sbjct 1077 ATCTTCCAGTTCTGAGAACTGAACTTCTTCTTG 1109
Score = 532 bits (288), Expect = 2e-150
Identities = 393/439 (90%), Gaps = 26/439 (6%)
Strand=Plus/Plus
Query 68 TCTCTGGCGAGAAGTAAAT-T-TTTATCTCTGAGCTTGGTTTCACCATTTCTCTATCTCT 125
|||||||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||
Sbjct 49 TCTCTGGCGAGAAG-AAATATCTTTATCTCTGAGCTTTCTTTCACCATTTCTCTGTCTCT 107
Query 126 ATCTCCTCGCTGGGTTACG-G----TTTGGTAAGGTCAGTGTTCTCTAAGGCTGAAATTT 180
|||| || || || |||| | |||||||| ||| |||| ||||||||||||||
Sbjct 108 ATCT-CT--CT-GG-TACGAGCCTATTTGGTAAAATCACACTTCTATAAGGCTGAAATTT 162
Query 181 GGGGGTTTCTCAGTCTCGATGTGGTCGTGCTCCGTTAGGATTCTTCACAATCATTAGGGT 240
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 163 GGGGTTTTCTCAGTCTCGATGTGGTCGTGCTCCGTTAGGATTCCTCACAATCATTAGGCT 222
Query 241 TATATTTCT-TACAAACTGATGCTCATTTTCTCTTCCCTGTCTATGGCTTTATCTGTGAT 299
| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGTATTTCTCT-CAAAGTGATGCTCATTTTCTCTTCCCTGTCTATGGCTTTATCTGTGAT 281
Query 300 CCTTCAAAAGCTTAGTGTCTTCGGCCCTGGTTTGAATCCTTCTTTCCCTTACTGCATCGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CCTTCAAAAGCTTAGTGTCTTCGGCCCTGGTTTGAATCCTTCTTTCCCTTACTGCATCGC 341
Query 360 CAATCACTCCT-TTGCCTCCCGTTAATTGAGTTGCTCTCTTTCAACTTAATTACATTAGT 418
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 342 CAATCACTC-TGTTGCCTCCCGTTAATTGAGTTGCTCTCTTTCAACTGAATTACATAAGT 400
Query 419 CTGCTTCCTTTGCTGTCTAGTCTGGATAGTGTTGCAAATC---A---AGTAGTA-T-C-T 469
|||||||||||||||||||||||||||| |||| |||||| | || |||| | | |
Sbjct 401 CTGCTTCCTTTGCTGTCTAGTCTGGATATTGTTTCAAATCCTTAGCCAGAAGTAGTACCT 460
Query 470 TCTTTAGACATTCTTGGCT 488
||| |||||||||||||||
Sbjct 461 TCTCTAGACATTCTTGGCT 479
Score = 102 bits (55), Expect = 6e-21
Identities = 94/111 (85%), Gaps = 10/111 (9%)
Strand=Plus/Plus
Query 1199 ACTTATCAG-AACTATTATGGTTGGTGTTTGATCTTATGGGCTATGTGAAACATTGAAAC 1257
||||||||| ||| ||||| ||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1110 ACTTATCAGAAAC-ATTATCTTTGGTTTTTGATCTTAT-GGCTATGTGAAACTTTGAAAC 1167
Query 1258 TGC--G---G--ATACATTCATGTAATCTTCAGTGTGTTATTTTGCAACTC 1301
|| | | ||| ||| |||||||||||||||||||||||||||||||
Sbjct 1168 AGCTGGTTTGTCATATATTAATGTAATCTTCAGTGTGTTATTTTGCAACTC 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5