BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61270.1 Length=1360 Score E Sequences producing significant alignments: (Bits) Value Ahg358332 jgi|Araly1|358332|fgenesh1_pg.C_scaffold_8002119 1622 0.0 > Ahg358332 jgi|Araly1|358332|fgenesh1_pg.C_scaffold_8002119 Length=1221 Score = 1622 bits (878), Expect = 0.0 Identities = 1040/1114 (93%), Gaps = 27/1114 (2%) Strand=Plus/Plus Query 164 GTCGAATTATGGAGTTAAAGAGCTCACATGGGAAAATGGGCAACTAACCGTTCATGGTCT 223 ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| Sbjct 120 GTCGAATTATGGAGTGAAGGAGCTCACATGGGAAAATGGGCAATTAACCGTTCATGGTCT 179 Query 224 AGGCGACGAAGTAGAACCAACCACCTCGAATAACCCTATTTGGACTCAAAGTCTCAACGG 283 |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 180 AGGCGAAGAAGTCGAACCAACCACCTCGAATAACCCTATTTGGACCCAAAGTCTCAACGG 239 Query 284 TTGTGAGACTTTGGAGTCTGTGGTTCATCAAGCGGCTCTACAGCAGCCAAGCAAGTTTCA 343 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 240 ATGTGAGACTTTGGAGTCTGTGGTTCATCAAGCGGCTCTTCAGCAGCCAAGCAAGCTTCA 299 Query 344 GCTGCAGAGTCCGAATG----GTCCAAACCACAATTATGAGAGCAAGGATGGATCTTGTT 399 ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 300 GCTACAGAGTCC-TATGTTATCTCCAAACCACAATTATGAGAGCAAGGATGGATCTTGTT 358 Query 400 CAAGAAAACGCGGTTATCCTCAAG--A---A----ATGGACCGATGGTTCGCTGTTCAAG 450 |||||||||||||||||||||||| | | ||||||||||||||||||||||||| Sbjct 359 CAAGAAAACGCGGTTATCCTCAAGAAATGGACGGTATGGACCGATGGTTCGCTGTTCAAG 418 Query 451 AGGAGAGCCATAGAGTTGGCCACAGCGTCACTGCAAGTGCGAGTGGTACCAATATGTCTT 510 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 419 AGGAGAGCCATAGAGTTGGTCACAGCGTGACTGCAAGTGCTAGTGGTACCAATATGTCTT 478 Query 511 GGGCGTCTTTTGAATCCGGTCGGAGCTTGAAGACAGCTAGAACCGGAGACAGAGACTATT 570 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GGGCGTCTTTTGAATCTGGTCGGAGCTTGAAGACAGCTAGAACCGGAGACAGAGACTATA 538 Query 571 TCCGCTCTGGATCGGAAACTCAAGATACTGAAGGAGATGAACAAGAGACAAGAGGAGAAG 630 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 539 TCCGCTCTGGATCGGAAACTCAAGATACTGAAGGAGATGAACAAGAGACTAGGGGAGAAG 598 Query 631 CAGGTAGATCTAATGGACGACGGGGACGAGCAGCAGCGATTCACAACGAGTCCGAAAGGA 690 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CAGGGAGATCTAATGGACGACGGGGACGAGCAGCAGCGATTCACAACGAGTCCGAAAGGA 658 Query 691 GACGGCGTGATAGGATAAACCAGAGGATGAGAACACTTCAGAAGCTGCTTCCTACTGCAA 750 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 659 GACGACGTGATAGGATAAACCAGAGGATGAGAACACTTCAAAAGCTGCTTCCTACTGCAA 718 Query 751 GTAAGGCGGATAAAGTCTCAATCTTGGATGATGTTATCGAACACTTGAAACAGCTACAAG 810 ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| | Sbjct 719 GTAAGGCGGATAAAGTCTCGATCTTGGATGATGTGATCGAACACTTGAAACAGTTACAGG 778 Query 811 CACAAGTACAGTTCATGAGCCTAAGAGCCAA-CTTGCCACAACAAATGATGATTCCGCAA 869 ||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||| Sbjct 779 CACAAGTTCAGTTTATGAGCCTAAGAGCTAATCT-GCCACAACAAATGATGATTCCGCAA 837 Query 870 CTACCTCCACCACAGTCAGTTCTCAGCATCcaacaccaacaacaacaacaacaacagcag 929 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| || ||| Sbjct 838 CTACCTCCACCCCAGTCAGTTCTCAACATCCAACACCAACAGCAACAACAGCA---GCA- 893 Query 930 cagcagcagcaacaacagcagcaacagTTTCAGATGTCGTTGCTTGCAACAATGGCAAGA 989 | || | ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 894 -A-CA--A-CAACAACAGCAGCAACAGTTTCAGATGTCGTTGCTTGCAACAATGGCGCGA 948 Query 990 ATGGGAATGGGAGGTGGTGGAAATGGTTATGGAGGTTTAGTtcctcctcctcctcctccA 1049 |||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 949 ATGGGAATGGGAAGCGGAGGAAATGGTTATGGAGGTTTAGTTCCTCCTCCTCCTCCTCCA 1008 Query 1050 CCAATGATGGTCCCTCCTATGGGTAACAGAGACTGCACCAACGGTTCTTCAGCCACATTA 1109 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1009 CCATTGATGGTCCCTCCTATGGGTAACAGAGACTGCACCAACGGTTCTTCAGCCACTTTA 1068 Query 1110 TCTGATCCATACAGCGCCTTTTTCGCACAGACAATGAATATGGATCTCTACAATAAAATG 1169 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 ACTGATCCGTACAGCGCCTTTTTCGCACAGACAATGAATATGGATCTCTACAATAAAATG 1128 Query 1170 GCAGCAGCTATCTATAGACAACAGTCTGATCAAACAACAAAGGTAAATATCGG-CATGCC 1228 || ||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||| Sbjct 1129 GCTGCAGCGATCTATAGACAACAGTCTGATCAATCAACAAAGGTAAATA-CGGGCATGCC 1187 Query 1229 TTCAAGTTCTTCGAATCATGAGAAAAGAGATTAG 1262 ||||||||||||||||| ||||||||||||||| Sbjct 1188 CTCAAGTTCTTCGAATCACGAGAAAAGAGATTAG 1221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50894094195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5