BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61340.1 Length=1114 Score E Sequences producing significant alignments: (Bits) Value Ahg950890 jgi|Araly1|950890|scaffold_802777.1 1600 0.0 > Ahg950890 jgi|Araly1|950890|scaffold_802777.1 Length=1020 Score = 1600 bits (866), Expect = 0.0 Identities = 973/1025 (95%), Gaps = 6/1025 (1%) Strand=Plus/Plus Query 53 AAGAAAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 112 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAG-AAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 59 Query 113 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCc 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCC 119 Query 173 ctccctttctccgccggtctcctcctctctcagcctttcttctcttcttcctcttccacc 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 120 CTCCCTTTCTCCGCCGGTCTCCTCCTCTCTCAGCCTTTCTTCTCTTCTTCCTCTTCTATC 179 Query 233 cttcACATGAGGCTTAACATGCTCTTCCGCGGAGCGGGTTTCTCTTCTTCTCATGACTTC 292 |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 180 CTTCACATGAGGCTTAACATGCTCTTTCGCGGAGCGGGTTTCTCTTCTTCTCACAATTTC 239 Query 293 TTCAACATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 352 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTCAATATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 299 Query 353 TTCTCCCTCACATTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 412 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTCTCCCTCACTTTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 359 Query 413 CACTCTGCAGATTCCTCCTCTGTTTTCTACCTCCGGCTTCTCAAAACTTACGTTTGCAAC 472 |||||||||||||| || | | |||| ||||||||||||||||||||||||||||| ||| Sbjct 360 CACTCTGCAGATTCATC-TGT-TTTT-TACCTCCGGCTTCTCAAAACTTACGTTTGTAAC 416 Query 473 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCTTAGCATACAAT 532 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 417 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCGTAGCATACAAT 476 Query 533 ACCCTTGAAGCCTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCCTATCCTCA 592 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 477 ACCCTTGAAGCTTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCGTATGCTCA 536 Query 593 GCAATCATCTACTCAATTATCATCGCAAACGCCTTTGTCATCTCTAATCTAGCCTTGGTT 652 | || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 537 CCGATTATCTACTCGATTATCATCGCAAACGCCTTTGTCATCTCCAATCTAGCCTTGGTT 596 Query 653 TCATCACCTTCTTCTTCCTCGGGAGGATACACAAACATCCTCAAGGCGTGTCTTCTGATT 712 |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| Sbjct 597 TCATCACCTTCTTCTTCCTCAGGAGGATACACCAACATTCTCAAGGCGTGTCTTCTTATT 656 Query 713 CGCGGAAGAAATTCAACAGCAATGGCTCTTGCTCTGCCTACCAATCTCGGCTTAGCAGGA 772 | |||||||| |||||||||| ||||| ||||||| ||||||||||| |||||||||||| Sbjct 657 CACGGAAGAAGTTCAACAGCATTGGCTATTGCTCTTCCTACCAATCTTGGCTTAGCAGGA 716 Query 773 GTCGAAGCCTTGTTTCAGTACCGAGTCATGAGATCTTATTACAATGGAGACAGAGATATC 832 ||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||| Sbjct 717 GTCGAAGCCTTGTTTCAGTACAGGGTCTTGAGATCTTATTACAAAGGAGACAGAGATATC 776 Query 833 ATATCCATAGCTCTTGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 892 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 ACATCCATAGCTCTCGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 836 Query 893 GACACCATAGTCAACTTCCTCTTTTACCAGAGCTGCATCAAAAACGAGGAAGATCAAAAT 952 ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 837 GACACGATAGTCAACTTCCTTTTTTACCAGAGCTGCATCAAGAACGAGGAAGATCAAAAG 896 Query 953 ATCGGTAGAGAAGACGAGTATTCAATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 1012 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 897 ATCGGTAGAGAAGACGAGTATTCGATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 956 Query 1013 ATACACATCAAAGGATCAAAGAACTTGCAAGAAATCTTGTGACTCTCTTG-TGTTGGTTG 1071 ||||||||||| ||||||||||| || |||||||| |||||||| ||||| | ||||||| Sbjct 957 ATACACATCAATGGATCAAAGAATTTACAAGAAATATTGTGACTTTCTTGAT-TTGGTTG 1015 Query 1072 ATGTA 1076 ||||| Sbjct 1016 ATGTA 1020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41515856613 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5