BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61400.1 Length=1965 Score E Sequences producing significant alignments: (Bits) Value Ahg950896 jgi|Araly1|950896|scaffold_802783.1 2704 0.0 > Ahg950896 jgi|Araly1|950896|scaffold_802783.1 Length=2241 Score = 2704 bits (1464), Expect = 0.0 Identities = 1827/1994 (92%), Gaps = 58/1994 (3%) Strand=Plus/Plus Query 1 ATGTTGAAGCTTCTGCTTCCCCAACAT---AGAA---CATCAGTTTACTTGTTCAAGTTT 54 |||||||||| |||| ||| ||||||| |||| | |||| |||||| | ||||||| Sbjct 100 ATGTTGAAGCATCTGTTTCTCCAACATAGAAGAACTTCTTCAGCTTACTTCTACAAGTTT 159 Query 55 CAATTTTTCAACTTTAGATTCTTATCTCAATCTCCTTCTCTGTCAAATTCGGCA------ 108 |||||||||| ||||||||| || ||||| || |||| |||| ||||||| ||| Sbjct 160 CAATTTTTCACCTTTAGATTGTTCTCTCAGTCACCTTATCTGCCAAATTCAGCATCTTCG 219 Query 109 -T-CT-TC----T--T--TC-TCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 156 | || || | | || ||||||||||||||||||||||||||||||||||||||| Sbjct 220 TTGCTCTCTTTGTCGTCGTCTTCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 279 Query 157 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGAGATCTCGAG-TCTCCAAGTC 215 |||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| | Sbjct 280 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGATTTCTCG-GCTCTCGAAGAC 338 Query 216 AAACG-ATCTTCAATCTTTTTCGGCAGTGATTCATGTTTTAACCGGAGCTCACAAGTATA 274 || || |||| ||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 339 AA-CGGATCTCCAATCTTTTTCAGCTGTAATTCATGTTTTAACCGGAGCTCACAAGTATA 397 Query 275 CGCTCGCCAGATGTTTGATAAAAAGCCTCATAGAACGTCTGAAACGCCACAGTGAGCCGA 334 |||||||||| ||||||||||||||||||||||| ||||| | ||| |||||||||||| Sbjct 398 CGCTCGCCAGGTGTTTGATAAAAAGCCTCATAGAGCGTCTCAGGCGCTACAGTGAGCCGA 457 Query 335 GTAACATGTCTCATAGACTTTTCAATGCTCTGGAAGATATTCAGAGTCCAAAATTCAGTA 394 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 458 CTAACATTTCTCATAGACTTTTCAATGCTCTTGAAGATATTCAGAGTCCAAAATTCAGTA 517 Query 395 TCGGAGTGTTTAGTCTATTGATTATGGAGTTTCTGGAGATGGGTTTGTTTGAAGAAGCTC 454 |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| Sbjct 518 TCGGAGTGTTTAGTCTATTGATCATGGAGTTTTTGGAGATGGGTTTGTTTGAAGATGCTC 577 Query 455 TTTGGGTGAGTCGAGAGATGAAATGTTCACCGGATTCAAAAGCTTGTCTTTCGATTTTGA 514 ||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||| Sbjct 578 TTTGGGTGAGTCGAGAGATGAGATGTTCACCGGATTCGAAAGCTTGTCTTGCCATTTTGA 637 Query 515 ATGGCTTGGTTAGAAGGAGACGGTTTGATTCAGTTTGGGTTGATTACCAACTTATGATCT 574 |||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||||| Sbjct 638 ATGGATTGGTTAGAAGGAGAAGGTTTGATTCTGTCTGGGTTGATTACCAACTTATGATCT 697 Query 575 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTTTGTTTTGTTTCAATGCTGTTTCAAGC 634 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 698 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTCAGTTTTGTTTCAATGCTGTTTCAAGC 757 Query 635 AAGGTCTTTAC-TCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGATCAAG 693 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 758 AAGGT-TTTCCCTCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGGTCAAG 816 Query 694 CCGAATGTTTATATCTATACCATATATATCCTTGATCTCTGTAGGGATAATAAGATGGAG 753 || |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| Sbjct 817 CCAAATGTTTATATCTATACCATATATATCCGTGATCTGTGTAGGGAAAATAAGATGGAA 876 Query 754 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTCTTCCAAACTTGTATACT 813 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 877 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTGTTCCAAACTTGTATACT 936 Query 814 TACAGTGCAATGATTGATGGTTACTGCAAGACCGGTAACGTGAGACAAGCTTACGGATTG 873 ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| Sbjct 937 TACAGTGCAATGATTGATGGTTATTGTAAGACCGGTAACCTGAGACAAGCTTACGGCTTG 996 Query 874 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGTACATTGGTC 933 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 997 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGCACATTGGTC 1056 Query 934 GATGGATTTTGCAAAGCTCGCGAATTGGTAACTGCGAGGAGCCTTTTCGTGCATATGGTG 993 ||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 1057 GATGGTTTTTGCAAAGCTCGCGAATTGGTAGCTGCAAGAAGCCTTTTCGTGCATATGGTG 1116 Query 994 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACATTGCAAA 1053 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1117 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACAGTGCAAA 1176 Query 1054 TCAGGGAACATGTTGGAAGCAGTGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1113 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1177 TCAGGGAACATGTTGGAAGCAATGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1236 Query 1114 CCTGATGTATTCACTTACACTATACTTATCAACGGGCTATGTATTGAAGATCAGG-TAGC 1172 ||||||||||||||||| ||||||||||||||||||||||||| |||||| | || |||| Sbjct 1237 CCTGATGTATTCACTTATACTATACTTATCAACGGGCTATGTACTGAAGAGC-GGCTAGC 1295 Query 1173 AGAAGCAAATCGATTATTTCAGAAGATGAAGAATGAGAGAATTTTTCCGAGCTCTGCGAC 1232 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1296 AGAAGCAAATCGATTATTTCAGAGGATGAAGAATGAGAGAATTTTTCCGAGCTCTGTGAC 1355 Query 1233 TTACAACTCGCTGATTCATGGGTATTGTAAAGAATACAATATGGAGCAAGCTCTGGATTT 1292 |||||| |||||||||||||||| ||||||||| |||||||| ||| ||||||||||||| Sbjct 1356 TTACAATTCGCTGATTCATGGGTTTTGTAAAGAGTACAATATAGAGAAAGCTCTGGATTT 1415 Query 1293 GTGCTCTGAGATGACAGCAAGTGGTGTAGAACCCAACATCATAACCTTTTCTACTTTGAT 1352 |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1416 GTGCTCTGAGATGACATCAAGTGGGGTAGAACTCAACATCATAACCTTTTCTACTTTGAT 1475 Query 1353 CGATGGTTACTGCAATGTGAGAGACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1412 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1476 CGACGGTTACTGCAAAGTGAGAAACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1535 Query 1413 CATCAAAGGTATAGTTCCTGATGTTGTGACCTACACAGCTTTGATTGATGCACATTTCAA 1472 ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1536 CATTAAAGGTATAGTTCCTGATGTTGTGACCTACACAACTTTGATTGATGCGCATTTCAA 1595 Query 1473 GGAGGCCAACATGAAAGAAGCACTCAGGCTGTATAGTGACATGCTAGAGGCAGGAATCCA 1532 ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || Sbjct 1596 GGAGGCCAACATGAAAGAAGCACTCAGACTGTACAGTGACATGCTAGAGGCTGGAATTCA 1655 Query 1533 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGACGACTCTC 1592 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1656 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGGCGACTCTC 1715 Query 1593 TGTTGCCATCGATTTTTATCAAGAAAACAATCAA-C---A---G--A------------- 1630 || ||||||||||||||||| ||||||||||||| | | | | Sbjct 1716 TGATGCCATCGATTTTTATCTAGAAAACAATCAAGCTGCAACCGGTAAATCCATTTTCCA 1775 Query 1631 G-G-AGCTGTTGGAA-TCATGTGGGGTTTACATGCTTGATTGAAGGGTTGTGTCAGAACG 1687 | | ||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1776 GAGGAGCTGCTGGAAAT-ATGTGGGGTTTACATGCTTGATTGAAGGGTTATGTCAGAACG 1834 Query 1688 GCTACATTCTTAGAGCTAGCAGATTCTTCTCAGACATGAGATCCTGCGGGATAACCCCTG 1747 ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1835 GCTACATTCTTAGAGGTAGCAGATTCTTCTCAGACATGAGATCCGGCGGGGTAACCCCTG 1894 Query 1748 ACATATGCAGTTACGTTTCAATGTTAAAGGGCCACCTCCAAGAAAAGCGTATTACTGATA 1807 ||||||| |||||||| || |||||||||| |||||||| ||||||||||||||| |||| Sbjct 1895 ACATATGGAGTTACGTATCGATGTTAAAGGCCCACCTCCGAGAAAAGCGTATTACAGATA 1954 Query 1808 CAATGATGTTGCAGTGTGACATGATCAAAACTGGGATATTGCCAAACCTTTTGGTGAATC 1867 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1955 CAATGATGTTGCACTGTGACATGATCAAAACTGGGATATTGCCAAACCTTATGGTGAATC 2014 Query 1868 AATTGCTAGCCAGGTTTTACCAAGCGAATGGATATGTAAAATCAGCTTGTTTTTTGACCA 1927 |||||||||||| |||||| |||| |||||||||| ||| |||||||||||| ||||||| Sbjct 2015 AATTGCTAGCCATGTTTTATCAAGAGAATGGATATCTAAGATCAGCTTGTTTCTTGACCA 2074 Query 1928 ATTCAAGTCGTTTG 1941 |||||||||||||| Sbjct 2075 ATTCAAGTCGTTTG 2088 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73856985055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5