BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61410.1 Length=1408 Score E Sequences producing significant alignments: (Bits) Value Ahg950897 jgi|Araly1|950897|scaffold_802784.1 1448 0.0 Ahg950896 jgi|Araly1|950896|scaffold_802783.1 211 1e-53 > Ahg950897 jgi|Araly1|950897|scaffold_802784.1 Length=886 Score = 1448 bits (784), Expect = 0.0 Identities = 852/885 (96%), Gaps = 3/885 (0%) Strand=Plus/Plus Query 250 TTGAGTCTTTGATTAGGGACATGTCAACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCC 309 |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2 TTGAATCTTTGATT-CGGACATGTCGACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCC 60 Query 310 AGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCCTTTT 369 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 AGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCGTTTT 120 Query 370 CTTTCTCCAGAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTT 429 |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| Sbjct 121 CTTTCTCCAGAAGGAGAAGTCATGGAATTGTCAAGGCCTCAGCTCGGGTTGATAAGTTTT 180 Query 430 CGAAAAGTGATATCATTGTTTCTCCCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCG 489 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 CCAAAAGTGATATCATTGTTTCTCCCTCAATTCTCTCGGCTAATTTCGCCAAATTAGGCG 240 Query 490 AGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACG 549 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 241 AGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTGATGGATG 300 Query 550 GTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGA 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGA 360 Query 610 CAGATCTTCCTTTGGATGTTCATCTGATGATAGTGGAACCCGAGCAGAGAGTACCGGATT 669 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 361 CAGATCTTCCGTTGGATGTTCATCTTATGATAGTGGAACCCGAGCAGAGAGTACCGGATT 420 Query 670 TCATCAAAGCAGGTGCAGATATTGTCAGTGTACATTGTGAACAGCAATCCACCATCCATT 729 |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 421 TCATCAAAGCAGGTGCAGATATAGTCAGTGTACATTGTGAACAGCAATCGACTATCCATT 480 Query 730 TGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTTCTAAACC 789 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 481 TGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTCCTAAACC 540 Query 790 CTGGAACCCCATTGAGTGCAATAGAATATGTCTTGGATATGGTGGATCTGGTCTTGATCA 849 ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| Sbjct 541 CTGGAACCCCATTGACTGCAATAGAATATGTCTTGGATGTTGTGGATCTGGTCTTGATCA 600 Query 850 TGTCGGTCAACCCTGGTTTTGGTGGACAGAGCTTTATTGAAAGCCAAGTAAAGAAAATCT 909 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 601 TGTCGGTCAACCCCGGTTTTGGTGGACAGAGCTTTATCGAAAGCCAAGTAAAGAAAATCT 660 Query 910 CGGACTTGAGGAAAATGTGTGCAGAGAAGGGAGTAAACCCATGGATTGAAGTTGATGGTG 969 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 661 CGGACTTGAGAAAAATGTGTGCAGAAAAGGGAGTAAACCCATGGATTGAAGTTGATGGTG 720 Query 970 GTGTCACTCCAGCGAATGCGTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTG 1029 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 721 GTGTCACTCCAGCGAACGCTTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTG 780 Query 1030 GATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCA 1089 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCA 840 Query 1090 A-ACGACCAGCAGCTGTAGCTGTGTAATGTGAAGCAACAGCAAGC 1133 | | | |||| ||||||||||||||||||||||| |||| ||||| Sbjct 841 AGAGG-CCAGAAGCTGTAGCTGTGTAATGTGAAGAAACAACAAGC 884 > Ahg950896 jgi|Araly1|950896|scaffold_802783.1 Length=2241 Score = 211 bits (114), Expect = 1e-53 Identities = 134/143 (94%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 1233 AAGAATCAAACTCA-ATATCTTCAAAGTAGGCTCCTCTATACTATTCTGTACCATTGTCT 1291 ||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2238 AAGAATCAATCT-ATATATCTACAAAGTAGGCTCCTCTATACTATTCTGTACCATTGTCT 2180 Query 1292 TGTAAATTGAGGATATGCAGATTCCATACATTTTGCAATGAAACACTGTGATAAGAAATA 1351 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 2179 TGTAAATTGAGGATATGCAGATTCCATACATTTTGCAATGAAACTCTGTAATAAGAAATA 2120 Query 1352 TGTTGTTACATATGTGTTTTTGA 1374 || |||||||| |||||||||| Sbjct 2119 TGCTGTTACAT--GTGTTTTTGA 2099 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52640718590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5