BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61520.1 Length=1975 Score E Sequences producing significant alignments: (Bits) Value Ahg950909 jgi|Araly1|950909|scaffold_802796.1 2375 0.0 > Ahg950909 jgi|Araly1|950909|scaffold_802796.1 Length=1564 Score = 2375 bits (1286), Expect = 0.0 Identities = 1451/1531 (95%), Gaps = 9/1531 (1%) Strand=Plus/Plus Query 107 AGAAGAAGCAAGAAAAGAAGCCATGGCTAAATCAGTATCTGGCGGGAAGATTACTTATTT 166 |||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||| Sbjct 7 AGAAGAAGCAAGAAAACAAGCCATGGCTAAATCAGAATCTGGCGGGAAGATAACGTATTT 66 Query 167 TGTGGTGGCTTCATGTGTCATGGCCGCCATGGGCGGTGTCATCTTCGGCTACGACATCGG 226 ||||||||| ||||||||||||||||||||||| |||||| | || |||||||||||||| Sbjct 67 TGTGGTGGCATCATGTGTCATGGCCGCCATGGGAGGTGTCCTATTTGGCTACGACATCGG 126 Query 227 GGTTTCAGGTGGAGTGATGTCAATGGGGCCATTTCTAAAAAGATTTTTCCCAAAAGTGTA 286 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 127 GGTTTCAGGTGGAGTGATGTCAATGGGGCCATTTCTGAAAAGATTTTTCCCAAAAGTGTA 186 Query 287 TAAGCTCCaagaagaagatagaagaagaagaGGCAATAGCAATAACCACTACTGCCTTTT 346 ||||||||||||||||||||||||||||||| || | |||||||| || || ||||| Sbjct 187 TAAGCTCCAAGAAGAAGATAGAAGAAGAAGA---AACATTAATAACCATTATTGTCTTTT 243 Query 347 CAATAGCCAACTTCTTACATCCTTCACATCTTCTCTATACGTTTCCGGTC-TCATCGCTA 405 |||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||| Sbjct 244 CAATAGCCAACTTCTTACGTCCTTCACATCTTCTCTATACGTTTCTGG-CTTCATCGCTA 302 Query 406 CTCTGTTAGCTTCGTCCGTGACTCGTTCATGGGGTCGCAAGCCCTCTATATTTCTTGGCG 465 ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 303 CTCTGTTGGCTTCGTCCGTGACTCGTTCTTGGGGTCGCAAGCCCTCTATATTTCTCGGTG 362 Query 466 GTGTGTCCTTTCTCGCCGGCGCTGCTCTTGGTGGCTCTGCTCAAAACGTTGCTATGCTCA 525 | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 GCGTGGCCTTTCTCGTCGGCGCTGCTCTTGGTGGCTCTGCTCAAAACGTTGCTATGCTCA 422 Query 526 TTATTGCGCGTCTCTTGCTCGGCGTAGGAGTTGGATTCGCTAACCAGTCGGTTCCTCTGT 585 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 TCATTGCACGTCTCTTGCTCGGCGTAGGAGTTGGATTCGCTAACCAGTCGGTTCCTCTGT 482 Query 586 ATCTCTCCGAGATGGCGCCGGCAAAATACAGAGGAGCAATCAGCAATGGTTTCCAGCTCT 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 ATCTCTCCGAGATGGCGCCGGCAAAATACAGAGGAGCAATCAGCAATGGTTTCCAGCTCT 542 Query 646 GTATCGGAATTGGATTTCTATCTGCAAATGTAATAAACTACGAAACCCAAAATATCAAAC 705 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 543 GTATCGGAATTGGATTTCTATCTGCAAATATAATAAACTACGAAACCCAAAAGATCAAAC 602 Query 706 ATGGTTGGAGAATCTCTTTAGCCACAGCTGCAATACCTGCTTCAATCCTCACTTTAGGAT 765 | |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| | Sbjct 603 ACGGTTGGAGAATCTCTTTAGCCACAGCCGCAATTCCGGCTTCAATACTCACTTTAGGCT 662 Query 766 CACTGTTTCTCCCGGAAACGCCGAATAGTATCATCCAGACCACCGGAGATGTTCACAAGA 825 |||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 663 CACTATTTCTCCCGGAAACGCCAAACAGTATCATCCAGACAACCGGAGATGTTCACAAGA 722 Query 826 CCGAGCTTATGCTTCGCCGTGTCCGTGGAACTAACGACGTTCAAGATGAGCTTACTGATC 885 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 723 CCGAGCTTATGCTTCGCCGTGTCCGTGGAACAAACGACGTTCAAGACGAGCTTACTGATC 782 Query 886 TCGTTGAAGCGAGTTCTGGTTCTGATACAGATTCAAACGCGTTTTTGAAACTGCTTCAAA 945 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 783 TCGTTGAAGCGAGTTCTGGTTCTGATACAGATTCAAACGCGTTTGCGAAACTGCTTCAAA 842 Query 946 GAAAATATAGGCCTGAGTTAGTGATGGCTTTGGTGATACCTTTCTTTCAGCAAGTTACTG 1005 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 843 GAAAATATAGGCCTGAGTTAGTGATGGCTTTGGCGATACCTTTCTTTCAGCAAGTTACTG 902 Query 1006 GAATCAATGTTGTTGCTTTCTACGCACCGGTTTTGTATAGAACCGTTGGGTTTGGAGAGA 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 GAATCAATGTTGTTGCTTTCTACGCACCGGTTTTGTATAGAACCGTTGGGTTTGGAGAGA 962 Query 1066 GTGGTTCGTTGATGTCGACCCTCGTGACTGGAATCGTGGGAACCTCGTCGACGTTGTTGT 1125 |||||||||||||||| || |||||||| ||||||||||||||| |||||||||| |||| Sbjct 963 GTGGTTCGTTGATGTCCACGCTCGTGACCGGAATCGTGGGAACCACGTCGACGTTCTTGT 1022 Query 1126 CGATGCTTGTCGTTGACAGAATCGGTAGAAAGACTCTGTTTTTGATTGGAGGGTTACAGA 1185 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 CGATGCTTGTTGTAGACAGAATCGGTAGAAAGACTCTGTTTTTGATTGGAGGGTTACAGA 1082 Query 1186 TGCTCGTGTCGCAAGTTACCATTGGTGTGATCGTTATGGTGGCTGATGTTCA-CGACGGT 1244 |||| ||||||||||||||||| ||||||||| ||||||| ||||| || || ||||||| Sbjct 1083 TGCTTGTGTCGCAAGTTACCATCGGTGTGATCATTATGGTTGCTGACGT-CAACGACGGT 1141 Query 1245 GTGATCAAGGAAGGGTATGGTTACGCGGTTGTGGTTTTGGTGTGTGTCTACGTGGCCGGG 1304 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1142 GTGATCAAGGAGGGGTATGGTTACGCGGTTGTGGTTTTGGTGTGTGTCTACGTGGCGGGG 1201 Query 1305 TTTGGTTGGTCTTGGGGTCCATTAGGATGGCTTGTACCGAGTGAGATTTTTCCGTTGGA- 1363 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 TTTGGTTGGTCGTGGGGTCCATTAGGATGGCTTGTACCGAGTGAGATTTTTCCGTTGGAT 1261 Query 1364 GATAAGATCGGTGGCGCAGAGTGTAACTGTGGCAGTGAGTTTTGTGTTTACTTTTGCGGT 1423 | ||||||||| |||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 1262 G-TAAGATCGGCGGCGCAGAGTGTGACGGTAGCAGTGAGTTTTGTGTTTACTTTTGCGGT 1320 Query 1424 GGCTCAAAGTGCACCACCGATGTTGTGTAAGTTTCGAGCTGGGATTTTCTTCTTTTATGG 1483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GGCTCAAAGTGCACCACCGATGTTGTGTAAGTTTCGAGCTGGGATTTTCTTCTTTTATGG 1380 Query 1484 AGGGTGGTTGGTGGTAATGACGGTAGCGGTGCAGCTGTTTTTGCCGGAGACTAAGAATGT 1543 ||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct 1381 AGGGTGGTTGGTGGTGATGACTGTGGCAGTGCAGCTGTTTTTGCCGGAGACTAAGAATGT 1440 Query 1544 TCCAATCGAGAAGGTGGTTGGACTTTGGGAGAAGCATTGGTTTTGGAGGAGAATGACGAG 1603 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 TCCGATCGAGAAGGTGGCTGGACTTTGGGAGAAGCATTGGTTTTGGAGGAGAATGACGAG 1500 Query 1604 CAAGCGTGATATCCAAGAAACCACCATTCTT 1634 |||||||||||||||| |||||||||| ||| Sbjct 1501 CAAGCGTGATATCCAATAAACCACCATACTT 1531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74237887505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5