BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61530.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496313 jgi|Araly1|496313|fgenesh2_kg.8__2129__AT5G61530.1 2124 0.0
Ahg351887 jgi|Araly1|351887|fgenesh1_pg.C_scaffold_6002480 749 0.0
Ahg933103 jgi|Araly1|933103|scaffold_401091.1 737 0.0
Ahg947277 jgi|Araly1|947277|scaffold_703506.1 726 0.0
Ahg936631 jgi|Araly1|936631|scaffold_500822.1 486 2e-136
Ahg359010 jgi|Araly1|359010|fgenesh1_pg.C_scaffold_9000050 424 1e-117
> Ahg496313 jgi|Araly1|496313|fgenesh2_kg.8__2129__AT5G61530.1
Length=1317
Score = 2124 bits (1150), Expect = 0.0
Identities = 1264/1319 (96%), Gaps = 8/1319 (1%)
Strand=Plus/Plus
Query 64 TTTCATCTCCTGGAGCGATCAATTTCTTTTTCATCATATCGCTGACTCTCGTCTTCGTCG 123
|||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||||||
Sbjct 1 TTTCTTCTCCTGGAGCGATCAATTCCTTTTTCATCATATTGCTGACTCT--T-TTCGTCG 57
Query 124 TCTTTGATCGTATCGAGGAATTGGGTTTAGTTCGATTCGATCATCAGCTATCTCAATTTT 183
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 58 TCTTTGATCGTATCGAAGAATTGGGTTTAGTTCGATTCGATCATCAGCTATCTCAAATTT 117
Query 184 TCT-GGGGATTGTTCTAAAGGTTTCTAGTGACTTGTTTAAAGTGGTTGGTATTGGATAAT 242
||| ||||||| ||||||||||||||||||| ||| || ||||| |||||||||||||||
Sbjct 118 TCTGGGGGATTTTTCTAAAGGTTTCTAGTGATTTGGTTGAAGTGCTTGGTATTGGATAAT 177
Query 243 GCCTTCTCTCATCTCACAGCAATGGCAGGAGAGGACTAGTGGATTCTTTTCTTCATCAGG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCCTTCTCTCATCTCACAGCAATGGCAGGAGAGGACTAGTGGATTCTTTTCTTCATCAGG 237
Query 303 AACGAAGCTTAGGGAAGCAGGGCAGACTGCTGGTAGTTTTGTCGGG-GAAGTTGCTAAGG 361
||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||
Sbjct 238 AACGAAGCTTAGGGAAGCAGGGCAGACAGCTGGTAGTTTTGT-GGGCGAAGTCGCTAAGG 296
Query 362 ATGCGAAAGTGAATGTTGCAGATGTTGCAGAAAGAGTTGGGTCGTTGTTTAAAAGCCGGT 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATGCGAAAGTGAATGTTGCTGATGTTGCAGAAAGAGTTGGGTCGTTGTTTAAAAGCCGGT 356
Query 422 GGGCAATTCTTCAGCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTG 481
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGGCAATTCTTCAGCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTG 416
Query 482 CTGCCACAACCGGGACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTG 541
|||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 417 CTGCCACAACTGGGACCTTGGTCAGGAAGGGTATTACTGAGACAAAGGAAAAGGTTTCCG 476
Query 542 TTGGAAAGATCAAAGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTT 601
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 TTGGAAAGACCAAAGTGGAAGAGGCAGCCAAAAAGACTGCACAAAAGAGCAAGACCATTT 536
Query 602 TGACGGATATCGAAAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGA 661
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 TGACGGACATCGAAAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGA 596
Query 662 TTGAGATCACTGTCCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACT-AGTTAAA 720
||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||
Sbjct 597 TTGAGATCACTGTCCAGCGGCAGGAGTCAAGCAGGCCTATTCCACTAATACTGA-TTAAA 655
Query 721 TGCGCAGATTATCTCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 656 TGCGCAGATTATCTCATATTAACAGGACTTAATTCACCGAACTTGTTCAAAGCCGAAGGA 715
Query 781 GATAGAAAGTTGATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATA 840
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 716 GACAAAAAGTTGATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGCGCGTCAATA 775
Query 841 CCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTT 900
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 CCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCATGAAATACTATCTTGCTAGCCTT 835
Query 901 CCGACACCACTAACTACTTTTGAGCTTTATAATGAAATCAAAGATGCACGGTCGAGCATA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCGACACCACTAACTACTTTTGAGCTTTATAATGAAATCAAAGATGCACGGTCGAGCATA 895
Query 961 CACAGAATGAGACAGTCACTCCAGAAGCTTTCCAATGTGAATTATAATACATTGGAGTTC 1020
|||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 896 CACAGAATGAGAAAGTCACTCCAGAAGCTCTCCAATGTGAACTATAATACACTGGAGTTC 955
Query 1021 ATAACAGCGCTATTGCTTCGTGTGAGCCAGAAATCACTTCTTAACAAAATGGATTCGCAT 1080
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 956 ATAACAGCGCTATTGCTTCGTGTGAGCCAGAAATCACTACTTAACAAGATGGATTCGCAT 1015
Query 1081 AGCCTAGCTATGGAAATGGCTCCAGTGATCATGTGGCGAGAAGACAACAGGCCTGAATCT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGCCTAGCTATGGAAATGGCTCCAGTGATCATGTGGCGAGAAGACAACAGGCCTGAATCC 1075
Query 1141 TATCGGGAATACTGGAGACGCCCGTCAAGGAGTCCTAAGAAAAGTAACGACTTTGAAACT 1200
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1076 TATCGGGAATACTGGAGACGCCCGTCGAGGAGTCCTAAGAAAAGCAACGACTTTGAAACT 1135
Query 1201 GCTACTCCATGGGACTTGCTCTCAGATGAAGGAGAAGGTCCAGATGCATCCTCATCAATC 1260
||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1136 GCTTCTCCGTGGGACTTGCTCTCAGATGAAGGAGAAGGTCCAGATGCATCTTCATCAATC 1195
Query 1261 CCTCTAGATGATATCGCACGAGTTGATTTTGGAGCGGTCGAGGTTGTCCAGTGCCTAATT 1320
|||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1196 CCTCTAGATGATATCGTACAAGTTGATTTTGGAGCGGTCGAGGTTGTGCAGTGCCTAATT 1255
Query 1321 GAACACCACAATGCGATTTTCACTGATGCAGCCGAGACTGTATGGAGGTGAAACCACCA 1379
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1256 GAACATCACAATGCGATTTTCACGGATGCAGCCGAGACTGTATGGAGGTGAAACCACCA 1314
> Ahg351887 jgi|Araly1|351887|fgenesh1_pg.C_scaffold_6002480
Length=624
Score = 749 bits (405), Expect = 0.0
Identities = 453/476 (95%), Gaps = 4/476 (1%)
Strand=Plus/Plus
Query 435 GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 194
Query 495 GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA 554
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 195 GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA 254
Query 555 AGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATCGA 614
| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 255 AATGGAAGAGGCAGCCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATCGA 314
Query 615 AAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGT 674
||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 315 AAGGTGGCAGAAGGGAGTTGCCAGCTCAGATATGTTTGGTGTTCCGATTGAGATCACTGT 374
Query 675 CCAGCGGCAGGAGTCAAGCAGGCCTATTCC-TCTGATACT-AGTTAAATGCGCAGATTAT 732
|||||||||||||||||||||||||||||| | || |||| | |||||||||||||||||
Sbjct 375 CCAGCGGCAGGAGTCAAGCAGGCCTATTCCAT-TGGTACTGA-TTAAATGCGCAGATTAT 432
Query 733 CTCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTG 792
|||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 433 CTCATATTAACAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTG 492
Query 793 ATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTG 852
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 493 ATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGTGCGTCAATACCTGAGGGTGTG 552
Query 853 AATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC 908
|||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 553 AATCCAGTTGATGTCGCTGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC 608
> Ahg933103 jgi|Araly1|933103|scaffold_401091.1
Length=664
Score = 737 bits (399), Expect = 0.0
Identities = 450/475 (95%), Gaps = 2/475 (0%)
Strand=Plus/Plus
Query 435 GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 214
Query 495 GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA 554
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 215 GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA 274
Query 555 AGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATCGA 614
| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 275 AATGGAAGAGGCAGCCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATCGA 334
Query 615 AAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGT 674
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 335 AAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTCCGATTGAGATCATTGT 394
Query 675 CCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACT-AGTTAAATGCGCAGATTATC 733
||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||||||
Sbjct 395 CCAGCGGCAAGAGTCAAGCAGGCCTATACCACTGATACTGA-TTAAATGCGCAGATTATC 453
Query 734 TCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGA 793
||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 454 TCATATTAACAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGA 513
Query 794 TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTGA 853
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 514 TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGTGCGTCAATACCTGAGGTTGTGA 573
Query 854 ATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC 908
||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||
Sbjct 574 ATCCAGTTGATGTCGATGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC 628
> Ahg947277 jgi|Araly1|947277|scaffold_703506.1
Length=665
Score = 726 bits (393), Expect = 0.0
Identities = 448/475 (94%), Gaps = 2/475 (0%)
Strand=Plus/Plus
Query 435 GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 215
Query 495 GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA 554
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 216 GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA 275
Query 555 AGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATCGA 614
| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 276 AATGGAAGAGGCAACCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATCGA 335
Query 615 AAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGT 674
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 336 AAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTCCGATTGAGATCATTGT 395
Query 675 CCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACT-AGTTAAATGCGCAGATTATC 733
||||||||| ||||||| ||||||||| || |||||||| | ||||||||||| ||||||
Sbjct 396 CCAGCGGCAAGAGTCAAACAGGCCTATACCACTGATACTGA-TTAAATGCGCATATTATC 454
Query 734 TCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGA 793
||||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 455 TCATATTAACAGGGCTTAATTCATCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGA 514
Query 794 TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTGA 853
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 515 TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGTGCGTCAATACCTGAGGGTGTGA 574
Query 854 ATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC 908
||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 575 ATCCAGTTGATGTCGCTGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC 629
> Ahg936631 jgi|Araly1|936631|scaffold_500822.1
Length=702
Score = 486 bits (263), Expect = 2e-136
Identities = 299/316 (95%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 433 CAGCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACC 492
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CAGCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACC 121
Query 493 GGGACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATC 552
||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 122 GGGACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTATGTTGGAAAGATC 181
Query 553 AAAGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATC 612
||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 182 AAAATGGAAGAGGCAGCCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATC 241
Query 613 GAAAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGC-GATTGAGATCAC 671
||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 242 GAAAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTT-CTGATTGAGATCAT 300
Query 672 TGTCCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACT-AGTTAAATGCGCAGATT 730
|||||||||||| ||||||||||||||||| || |||||||| | |||||||||||||||
Sbjct 301 TGTCCAGCGGCAAGAGTCAAGCAGGCCTATACCACTGATACTGA-TTAAATGCGCAGATT 359
Query 731 ATCTCATATTAACAGG 746
||||||||||||||||
Sbjct 360 ATCTCATATTAACAGG 375
Score = 139 bits (75), Expect = 5e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 739 TTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGATTCAA 798
||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 458 TTACCAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGATTCAA 517
Query 799 CAATTGGTTTCTGCTTACAATCAAGAT 825
|||||||||||||||||||||||||||
Sbjct 518 CAATTGGTTTCTGCTTACAATCAAGAT 544
Score = 135 bits (73), Expect = 7e-31
Identities = 81/85 (95%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 824 ATCCTAGGGCGTCAATACCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCTTGAAAT 883
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 582 ATCCTAGTGCGTCAATACCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCATGAAAT 641
Query 884 ACTATCTTGCTAGCCTTCCGACACC 908
|||||||||| | ||||||||||||
Sbjct 642 ACTATCTTGCCACCCTTCCGACACC 666
> Ahg359010 jgi|Araly1|359010|fgenesh1_pg.C_scaffold_9000050
Length=564
Score = 424 bits (229), Expect = 1e-117
Identities = 271/291 (93%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 619 TGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGTCCAG 678
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 260 TGG-AAGAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTCCGATTGAGATCATTGTCCAG 318
Query 679 CGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACT-AGTTAAATGCGCAGATTATCTCAT 737
||||| ||||||||||||||||| || |||||||| | ||||||||| ||||||||||||
Sbjct 319 CGGCAAGAGTCAAGCAGGCCTATACCACTGATACTGA-TTAAATGCGTAGATTATCTCAT 377
Query 738 ATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGATTCA 797
||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 378 ATTAACAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGATTCA 437
Query 798 ACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTGAATCC 857
||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 438 ACAGTTGGTTTCTGCTTACAATCAAGATCCTAGTGTGTCAATACCTGAGGGTGTGAATCT 497
Query 858 AGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC 908
||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 498 AGTTGATGTCGCTGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC 548
Score = 215 bits (116), Expect = 9e-55
Identities = 126/131 (96%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 435 GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG 197
Query 495 GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA 554
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 198 GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA 257
Query 555 AGTGGAAGAGG 565
| |||||||||
Sbjct 258 AATGGAAGAGG 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5